data_6KGM # _model_server_result.job_id kqrdLo41HIWeGmlsMo7w-w _model_server_result.datetime_utc '2024-11-27 23:42:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kgm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":906}' # _entry.id 6KGM # _exptl.entry_id 6KGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.278 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 3-[3,5-bis(fluoranyl)-2-phenylmethoxy-phenyl]propanal _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KGM _cell.length_a 120.451 _cell.length_b 178.696 _cell.length_c 235.256 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H14 F2 O2' _chem_comp.formula_weight 276.278 _chem_comp.id DJ0 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[3,5-bis(fluoranyl)-2-phenylmethoxy-phenyl]propanal _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C27 DJ0 doub 83 n n C27 C28 DJ0 sing 84 n n C28 C29 DJ0 sing 85 n n O16 C36 DJ0 sing 86 n n O16 C31 DJ0 sing 87 n n C36 C37 DJ0 sing 88 n n C29 C30 DJ0 sing 89 n n C31 C30 DJ0 doub 90 n y C31 C32 DJ0 sing 91 n y C30 C35 DJ0 sing 92 n y F C32 DJ0 sing 93 n n C37 C38 DJ0 doub 94 n y C37 C42 DJ0 sing 95 n y C32 C33 DJ0 doub 96 n y C38 C39 DJ0 sing 97 n y C35 C34 DJ0 doub 98 n y C42 C41 DJ0 doub 99 n y C33 C34 DJ0 sing 100 n y C34 F1 DJ0 sing 101 n n C39 C40 DJ0 doub 102 n y C41 C40 DJ0 sing 103 n y C27 H1 DJ0 sing 104 n n C28 H2 DJ0 sing 105 n n C28 H3 DJ0 sing 106 n n C29 H4 DJ0 sing 107 n n C29 H5 DJ0 sing 108 n n C33 H6 DJ0 sing 109 n n C35 H7 DJ0 sing 110 n n C36 H8 DJ0 sing 111 n n C36 H9 DJ0 sing 112 n n C38 H10 DJ0 sing 113 n n C39 H11 DJ0 sing 114 n n C40 H12 DJ0 sing 115 n n C41 H13 DJ0 sing 116 n n C42 H14 DJ0 sing 117 n n # _atom_sites.entry_id 6KGM _atom_sites.fract_transf_matrix[1][1] 0.008302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 901 901 GOL GOL . D 3 GOL A 1 902 902 GOL GOL . E 3 GOL A 1 903 903 GOL GOL . F 3 GOL A 1 904 904 GOL GOL . G 3 GOL A 1 905 905 GOL GOL . H 4 DJ0 A 1 906 1001 DJ0 XXX . I 5 FAD A 1 907 1001 FAD XXX . J 6 HOH A 1 1001 151 HOH HOH . J 6 HOH A 2 1002 13 HOH HOH . J 6 HOH A 3 1003 18 HOH HOH . J 6 HOH A 4 1004 1 HOH HOH . J 6 HOH A 5 1005 8 HOH HOH . J 6 HOH A 6 1006 27 HOH HOH . J 6 HOH A 7 1007 150 HOH HOH . J 6 HOH A 8 1008 137 HOH HOH . J 6 HOH A 9 1009 6 HOH HOH . J 6 HOH A 10 1010 162 HOH HOH . J 6 HOH A 11 1011 16 HOH HOH . J 6 HOH A 12 1012 136 HOH HOH . J 6 HOH A 13 1013 22 HOH HOH . J 6 HOH A 14 1014 5 HOH HOH . J 6 HOH A 15 1015 2 HOH HOH . J 6 HOH A 16 1016 30 HOH HOH . J 6 HOH A 17 1017 15 HOH HOH . J 6 HOH A 18 1018 148 HOH HOH . J 6 HOH A 19 1019 33 HOH HOH . J 6 HOH A 20 1020 3 HOH HOH . J 6 HOH A 21 1021 7 HOH HOH . J 6 HOH A 22 1022 10 HOH HOH . J 6 HOH A 23 1023 26 HOH HOH . J 6 HOH A 24 1024 32 HOH HOH . J 6 HOH A 25 1025 14 HOH HOH . J 6 HOH A 26 1026 163 HOH HOH . J 6 HOH A 27 1027 12 HOH HOH . J 6 HOH A 28 1028 35 HOH HOH . J 6 HOH A 29 1029 165 HOH HOH . J 6 HOH A 30 1030 9 HOH HOH . J 6 HOH A 31 1031 17 HOH HOH . J 6 HOH A 32 1032 161 HOH HOH . J 6 HOH A 33 1033 11 HOH HOH . J 6 HOH A 34 1034 4 HOH HOH . J 6 HOH A 35 1035 146 HOH HOH . J 6 HOH A 36 1036 28 HOH HOH . J 6 HOH A 37 1037 25 HOH HOH . J 6 HOH A 38 1038 20 HOH HOH . J 6 HOH A 39 1039 144 HOH HOH . J 6 HOH A 40 1040 138 HOH HOH . J 6 HOH A 41 1041 147 HOH HOH . J 6 HOH A 42 1042 31 HOH HOH . J 6 HOH A 43 1043 149 HOH HOH . J 6 HOH A 44 1044 24 HOH HOH . J 6 HOH A 45 1045 21 HOH HOH . J 6 HOH A 46 1046 19 HOH HOH . J 6 HOH A 47 1047 23 HOH HOH . J 6 HOH A 48 1048 29 HOH HOH . J 6 HOH A 49 1049 155 HOH HOH . J 6 HOH A 50 1050 145 HOH HOH . J 6 HOH A 51 1051 143 HOH HOH . J 6 HOH A 52 1052 139 HOH HOH . J 6 HOH A 53 1053 34 HOH HOH . J 6 HOH A 54 1054 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 DJ0 . . . H 4 7.35 -56.97 -36.632 1 78.26 ? C27 DJ0 906 A 1 HETATM 2 C C28 DJ0 . . . H 4 6.804 -55.685 -36.036 1 71.09 ? C28 DJ0 906 A 1 HETATM 3 C C29 DJ0 . . . H 4 6.554 -56.113 -34.57 1 82.38 ? C29 DJ0 906 A 1 HETATM 4 C C30 DJ0 . . . H 4 6.002 -55.04 -33.631 1 90.6 ? C30 DJ0 906 A 1 HETATM 5 C C31 DJ0 . . . H 4 6.741 -53.893 -33.319 1 107.51 ? C31 DJ0 906 A 1 HETATM 6 C C32 DJ0 . . . H 4 6.262 -53.023 -32.339 1 111.19 ? C32 DJ0 906 A 1 HETATM 7 C C33 DJ0 . . . H 4 5.057 -53.191 -31.716 1 102.46 ? C33 DJ0 906 A 1 HETATM 8 C C34 DJ0 . . . H 4 4.324 -54.278 -32.092 1 97.86 ? C34 DJ0 906 A 1 HETATM 9 C C35 DJ0 . . . H 4 4.759 -55.208 -33.012 1 96.65 ? C35 DJ0 906 A 1 HETATM 10 C C36 DJ0 . . . H 4 8.171 -52.301 -34.527 1 118.67 ? C36 DJ0 906 A 1 HETATM 11 C C37 DJ0 . . . H 4 6.968 -51.567 -35.045 1 113.56 ? C37 DJ0 906 A 1 HETATM 12 C C38 DJ0 . . . H 4 6.373 -51.932 -36.242 1 109.68 ? C38 DJ0 906 A 1 HETATM 13 C C39 DJ0 . . . H 4 5.373 -51.155 -36.799 1 113.93 ? C39 DJ0 906 A 1 HETATM 14 C C40 DJ0 . . . H 4 4.948 -50.008 -36.161 1 117.41 ? C40 DJ0 906 A 1 HETATM 15 C C41 DJ0 . . . H 4 5.509 -49.651 -34.956 1 115.69 ? C41 DJ0 906 A 1 HETATM 16 C C42 DJ0 . . . H 4 6.508 -50.428 -34.397 1 113.98 ? C42 DJ0 906 A 1 HETATM 17 F F DJ0 . . . H 4 7.049 -52.007 -31.937 1 124.89 ? F DJ0 906 A 1 HETATM 18 F F1 DJ0 . . . H 4 3.084 -54.421 -31.554 1 94.34 ? F1 DJ0 906 A 1 HETATM 19 O O15 DJ0 . . . H 4 8.374 -56.706 -37.574 1 82.93 ? O15 DJ0 906 A 1 HETATM 20 O O16 DJ0 . . . H 4 7.893 -53.633 -34.043 1 120.25 ? O16 DJ0 906 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #