data_6KGM # _model_server_result.job_id kWTI1Vn6FX9wxOk5ptsoeA _model_server_result.datetime_utc '2024-11-04 20:22:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kgm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":907}' # _entry.id 6KGM # _exptl.entry_id 6KGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KGM _cell.length_a 120.451 _cell.length_b 178.696 _cell.length_c 235.256 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 118 n n PA O2A FAD sing 119 n n PA O5B FAD sing 120 n n PA O3P FAD sing 121 n n O2A HOA2 FAD sing 122 n n O5B C5B FAD sing 123 n n C5B C4B FAD sing 124 n n C5B H51A FAD sing 125 n n C5B H52A FAD sing 126 n n C4B O4B FAD sing 127 n n C4B C3B FAD sing 128 n n C4B H4B FAD sing 129 n n O4B C1B FAD sing 130 n n C3B O3B FAD sing 131 n n C3B C2B FAD sing 132 n n C3B H3B FAD sing 133 n n O3B HO3A FAD sing 134 n n C2B O2B FAD sing 135 n n C2B C1B FAD sing 136 n n C2B H2B FAD sing 137 n n O2B HO2A FAD sing 138 n n C1B N9A FAD sing 139 n n C1B H1B FAD sing 140 n n N9A C8A FAD sing 141 n y N9A C4A FAD sing 142 n y C8A N7A FAD doub 143 n y C8A H8A FAD sing 144 n n N7A C5A FAD sing 145 n y C5A C6A FAD sing 146 n y C5A C4A FAD doub 147 n y C6A N6A FAD sing 148 n n C6A N1A FAD doub 149 n y N6A H61A FAD sing 150 n n N6A H62A FAD sing 151 n n N1A C2A FAD sing 152 n y C2A N3A FAD doub 153 n y C2A H2A FAD sing 154 n n N3A C4A FAD sing 155 n y N1 C2 FAD sing 156 n n N1 C10 FAD doub 157 n n C2 O2 FAD doub 158 n n C2 N3 FAD sing 159 n n N3 C4 FAD sing 160 n n N3 HN3 FAD sing 161 n n C4 O4 FAD doub 162 n n C4 C4X FAD sing 163 n n C4X N5 FAD doub 164 n n C4X C10 FAD sing 165 n n N5 C5X FAD sing 166 n n C5X C6 FAD doub 167 n y C5X C9A FAD sing 168 n y C6 C7 FAD sing 169 n y C6 H6 FAD sing 170 n n C7 C7M FAD sing 171 n n C7 C8 FAD doub 172 n y C7M HM71 FAD sing 173 n n C7M HM72 FAD sing 174 n n C7M HM73 FAD sing 175 n n C8 C8M FAD sing 176 n n C8 C9 FAD sing 177 n y C8M HM81 FAD sing 178 n n C8M HM82 FAD sing 179 n n C8M HM83 FAD sing 180 n n C9 C9A FAD doub 181 n y C9 H9 FAD sing 182 n n C9A N10 FAD sing 183 n n N10 C10 FAD sing 184 n n N10 C1' FAD sing 185 n n C1' C2' FAD sing 186 n n C1' "H1'1" FAD sing 187 n n C1' "H1'2" FAD sing 188 n n C2' O2' FAD sing 189 n n C2' C3' FAD sing 190 n n C2' H2' FAD sing 191 n n O2' HO2' FAD sing 192 n n C3' O3' FAD sing 193 n n C3' C4' FAD sing 194 n n C3' H3' FAD sing 195 n n O3' HO3' FAD sing 196 n n C4' O4' FAD sing 197 n n C4' C5' FAD sing 198 n n C4' H4' FAD sing 199 n n O4' HO4' FAD sing 200 n n C5' O5' FAD sing 201 n n C5' "H5'1" FAD sing 202 n n C5' "H5'2" FAD sing 203 n n O5' P FAD sing 204 n n P O1P FAD doub 205 n n P O2P FAD sing 206 n n P O3P FAD sing 207 n n O2P HOP2 FAD sing 208 n n # _atom_sites.entry_id 6KGM _atom_sites.fract_transf_matrix[1][1] 0.008302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 901 901 GOL GOL . D 3 GOL A 1 902 902 GOL GOL . E 3 GOL A 1 903 903 GOL GOL . F 3 GOL A 1 904 904 GOL GOL . G 3 GOL A 1 905 905 GOL GOL . H 4 DJ0 A 1 906 1001 DJ0 XXX . I 5 FAD A 1 907 1001 FAD XXX . J 6 HOH A 1 1001 151 HOH HOH . J 6 HOH A 2 1002 13 HOH HOH . J 6 HOH A 3 1003 18 HOH HOH . J 6 HOH A 4 1004 1 HOH HOH . J 6 HOH A 5 1005 8 HOH HOH . J 6 HOH A 6 1006 27 HOH HOH . J 6 HOH A 7 1007 150 HOH HOH . J 6 HOH A 8 1008 137 HOH HOH . J 6 HOH A 9 1009 6 HOH HOH . J 6 HOH A 10 1010 162 HOH HOH . J 6 HOH A 11 1011 16 HOH HOH . J 6 HOH A 12 1012 136 HOH HOH . J 6 HOH A 13 1013 22 HOH HOH . J 6 HOH A 14 1014 5 HOH HOH . J 6 HOH A 15 1015 2 HOH HOH . J 6 HOH A 16 1016 30 HOH HOH . J 6 HOH A 17 1017 15 HOH HOH . J 6 HOH A 18 1018 148 HOH HOH . J 6 HOH A 19 1019 33 HOH HOH . J 6 HOH A 20 1020 3 HOH HOH . J 6 HOH A 21 1021 7 HOH HOH . J 6 HOH A 22 1022 10 HOH HOH . J 6 HOH A 23 1023 26 HOH HOH . J 6 HOH A 24 1024 32 HOH HOH . J 6 HOH A 25 1025 14 HOH HOH . J 6 HOH A 26 1026 163 HOH HOH . J 6 HOH A 27 1027 12 HOH HOH . J 6 HOH A 28 1028 35 HOH HOH . J 6 HOH A 29 1029 165 HOH HOH . J 6 HOH A 30 1030 9 HOH HOH . J 6 HOH A 31 1031 17 HOH HOH . J 6 HOH A 32 1032 161 HOH HOH . J 6 HOH A 33 1033 11 HOH HOH . J 6 HOH A 34 1034 4 HOH HOH . J 6 HOH A 35 1035 146 HOH HOH . J 6 HOH A 36 1036 28 HOH HOH . J 6 HOH A 37 1037 25 HOH HOH . J 6 HOH A 38 1038 20 HOH HOH . J 6 HOH A 39 1039 144 HOH HOH . J 6 HOH A 40 1040 138 HOH HOH . J 6 HOH A 41 1041 147 HOH HOH . J 6 HOH A 42 1042 31 HOH HOH . J 6 HOH A 43 1043 149 HOH HOH . J 6 HOH A 44 1044 24 HOH HOH . J 6 HOH A 45 1045 21 HOH HOH . J 6 HOH A 46 1046 19 HOH HOH . J 6 HOH A 47 1047 23 HOH HOH . J 6 HOH A 48 1048 29 HOH HOH . J 6 HOH A 49 1049 155 HOH HOH . J 6 HOH A 50 1050 145 HOH HOH . J 6 HOH A 51 1051 143 HOH HOH . J 6 HOH A 52 1052 139 HOH HOH . J 6 HOH A 53 1053 34 HOH HOH . J 6 HOH A 54 1054 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . I 5 6.597 -67.349 -28.857 1 56.97 ? PA FAD 907 A 1 HETATM 2 O O1A FAD . . . I 5 7.952 -66.827 -29.155 1 48.74 ? O1A FAD 907 A 1 HETATM 3 O O2A FAD . . . I 5 5.589 -67.733 -29.93 1 48.39 ? O2A FAD 907 A 1 HETATM 4 O O5B FAD . . . I 5 6.819 -68.681 -27.958 1 65.92 ? O5B FAD 907 A 1 HETATM 5 C C5B FAD . . . I 5 5.917 -69.79 -27.769 1 54.54 ? C5B FAD 907 A 1 HETATM 6 C C4B FAD . . . I 5 6.728 -71.021 -28.057 1 54.03 ? C4B FAD 907 A 1 HETATM 7 O O4B FAD . . . I 5 5.914 -72.185 -27.796 1 60.2 ? O4B FAD 907 A 1 HETATM 8 C C3B FAD . . . I 5 7.24 -71.161 -29.495 1 51.9 ? C3B FAD 907 A 1 HETATM 9 O O3B FAD . . . I 5 8.626 -71.495 -29.503 1 54.68 ? O3B FAD 907 A 1 HETATM 10 C C2B FAD . . . I 5 6.344 -72.267 -30.076 1 54.41 ? C2B FAD 907 A 1 HETATM 11 O O2B FAD . . . I 5 6.97 -73.037 -31.101 1 56.12 ? O2B FAD 907 A 1 HETATM 12 C C1B FAD . . . I 5 6.126 -73.115 -28.832 1 57.14 ? C1B FAD 907 A 1 HETATM 13 N N9A FAD . . . I 5 4.984 -74.011 -28.886 1 54.41 ? N9A FAD 907 A 1 HETATM 14 C C8A FAD . . . I 5 3.807 -73.829 -29.564 1 54.75 ? C8A FAD 907 A 1 HETATM 15 N N7A FAD . . . I 5 2.968 -74.826 -29.454 1 55.93 ? N7A FAD 907 A 1 HETATM 16 C C5A FAD . . . I 5 3.637 -75.732 -28.646 1 56.76 ? C5A FAD 907 A 1 HETATM 17 C C6A FAD . . . I 5 3.294 -77.012 -28.159 1 54.06 ? C6A FAD 907 A 1 HETATM 18 N N6A FAD . . . I 5 2.147 -77.634 -28.448 1 47.19 ? N6A FAD 907 A 1 HETATM 19 N N1A FAD . . . I 5 4.188 -77.646 -27.371 1 56.12 ? N1A FAD 907 A 1 HETATM 20 C C2A FAD . . . I 5 5.35 -77.044 -27.105 1 56.35 ? C2A FAD 907 A 1 HETATM 21 N N3A FAD . . . I 5 5.787 -75.85 -27.516 1 60.45 ? N3A FAD 907 A 1 HETATM 22 C C4A FAD . . . I 5 4.877 -75.242 -28.284 1 55.78 ? C4A FAD 907 A 1 HETATM 23 N N1 FAD . . . I 5 7.969 -57.717 -31.86 1 60.83 ? N1 FAD 907 A 1 HETATM 24 C C2 FAD . . . I 5 8.972 -56.813 -31.691 1 65.3 ? C2 FAD 907 A 1 HETATM 25 O O2 FAD . . . I 5 9.352 -56.434 -30.578 1 67.34 ? O2 FAD 907 A 1 HETATM 26 N N3 FAD . . . I 5 9.579 -56.301 -32.805 1 68.11 ? N3 FAD 907 A 1 HETATM 27 C C4 FAD . . . I 5 9.147 -56.513 -34.087 1 71.65 ? C4 FAD 907 A 1 HETATM 28 O O4 FAD . . . I 5 9.914 -56.368 -35.028 1 68.43 ? O4 FAD 907 A 1 HETATM 29 C C4X FAD . . . I 5 7.749 -57.129 -34.277 1 75.95 ? C4X FAD 907 A 1 HETATM 30 N N5 FAD . . . I 5 7.797 -57.857 -35.541 1 70.4 ? N5 FAD 907 A 1 HETATM 31 C C5X FAD . . . I 5 7.201 -59.102 -35.64 1 64.9 ? C5X FAD 907 A 1 HETATM 32 C C6 FAD . . . I 5 7.074 -59.665 -36.904 1 66.27 ? C6 FAD 907 A 1 HETATM 33 C C7 FAD . . . I 5 6.546 -60.939 -37.07 1 67.5 ? C7 FAD 907 A 1 HETATM 34 C C7M FAD . . . I 5 6.331 -61.462 -38.466 1 55.65 ? C7M FAD 907 A 1 HETATM 35 C C8 FAD . . . I 5 6.159 -61.686 -35.931 1 66.86 ? C8 FAD 907 A 1 HETATM 36 C C8M FAD . . . I 5 5.669 -63.106 -36.065 1 60 ? C8M FAD 907 A 1 HETATM 37 C C9 FAD . . . I 5 6.257 -61.109 -34.668 1 61.31 ? C9 FAD 907 A 1 HETATM 38 C C9A FAD . . . I 5 6.764 -59.819 -34.51 1 65.16 ? C9A FAD 907 A 1 HETATM 39 N N10 FAD . . . I 5 6.835 -59.202 -33.233 1 61.52 ? N10 FAD 907 A 1 HETATM 40 C C10 FAD . . . I 5 7.505 -57.99 -33.051 1 61.58 ? C10 FAD 907 A 1 HETATM 41 C C1' FAD . . . I 5 6.213 -59.86 -32.065 1 61.4 ? C1' FAD 907 A 1 HETATM 42 C C2' FAD . . . I 5 7.172 -60.728 -31.249 1 56.12 ? C2' FAD 907 A 1 HETATM 43 O O2' FAD . . . I 5 7.933 -61.547 -32.135 1 56.29 ? O2' FAD 907 A 1 HETATM 44 C C3' FAD . . . I 5 6.43 -61.68 -30.309 1 62.03 ? C3' FAD 907 A 1 HETATM 45 O O3' FAD . . . I 5 5.501 -60.979 -29.495 1 62.53 ? O3' FAD 907 A 1 HETATM 46 C C4' FAD . . . I 5 7.31 -62.525 -29.385 1 63.11 ? C4' FAD 907 A 1 HETATM 47 O O4' FAD . . . I 5 8.521 -62.948 -30.016 1 61.45 ? O4' FAD 907 A 1 HETATM 48 C C5' FAD . . . I 5 6.552 -63.761 -28.967 1 60.98 ? C5' FAD 907 A 1 HETATM 49 O O5' FAD . . . I 5 7.034 -64.223 -27.691 1 60.85 ? O5' FAD 907 A 1 HETATM 50 P P FAD . . . I 5 6.331 -65.333 -26.783 1 53.71 ? P FAD 907 A 1 HETATM 51 O O1P FAD . . . I 5 5.132 -64.844 -26.07 1 48.45 ? O1P FAD 907 A 1 HETATM 52 O O2P FAD . . . I 5 7.539 -65.913 -26.025 1 58.58 ? O2P FAD 907 A 1 HETATM 53 O O3P FAD . . . I 5 5.82 -66.401 -27.846 1 48.91 ? O3P FAD 907 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #