data_6KGN # _model_server_result.job_id QbjKj5X6V9VVf4ATC74VLQ _model_server_result.datetime_utc '2024-11-24 05:38:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kgn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":907}' # _entry.id 6KGN # _exptl.entry_id 6KGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KGN _cell.length_a 120.451 _cell.length_b 178.696 _cell.length_c 235.256 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 118 n n PA O2A FAD sing 119 n n PA O5B FAD sing 120 n n PA O3P FAD sing 121 n n O2A HOA2 FAD sing 122 n n O5B C5B FAD sing 123 n n C5B C4B FAD sing 124 n n C5B H51A FAD sing 125 n n C5B H52A FAD sing 126 n n C4B O4B FAD sing 127 n n C4B C3B FAD sing 128 n n C4B H4B FAD sing 129 n n O4B C1B FAD sing 130 n n C3B O3B FAD sing 131 n n C3B C2B FAD sing 132 n n C3B H3B FAD sing 133 n n O3B HO3A FAD sing 134 n n C2B O2B FAD sing 135 n n C2B C1B FAD sing 136 n n C2B H2B FAD sing 137 n n O2B HO2A FAD sing 138 n n C1B N9A FAD sing 139 n n C1B H1B FAD sing 140 n n N9A C8A FAD sing 141 n y N9A C4A FAD sing 142 n y C8A N7A FAD doub 143 n y C8A H8A FAD sing 144 n n N7A C5A FAD sing 145 n y C5A C6A FAD sing 146 n y C5A C4A FAD doub 147 n y C6A N6A FAD sing 148 n n C6A N1A FAD doub 149 n y N6A H61A FAD sing 150 n n N6A H62A FAD sing 151 n n N1A C2A FAD sing 152 n y C2A N3A FAD doub 153 n y C2A H2A FAD sing 154 n n N3A C4A FAD sing 155 n y N1 C2 FAD sing 156 n n N1 C10 FAD doub 157 n n C2 O2 FAD doub 158 n n C2 N3 FAD sing 159 n n N3 C4 FAD sing 160 n n N3 HN3 FAD sing 161 n n C4 O4 FAD doub 162 n n C4 C4X FAD sing 163 n n C4X N5 FAD doub 164 n n C4X C10 FAD sing 165 n n N5 C5X FAD sing 166 n n C5X C6 FAD doub 167 n y C5X C9A FAD sing 168 n y C6 C7 FAD sing 169 n y C6 H6 FAD sing 170 n n C7 C7M FAD sing 171 n n C7 C8 FAD doub 172 n y C7M HM71 FAD sing 173 n n C7M HM72 FAD sing 174 n n C7M HM73 FAD sing 175 n n C8 C8M FAD sing 176 n n C8 C9 FAD sing 177 n y C8M HM81 FAD sing 178 n n C8M HM82 FAD sing 179 n n C8M HM83 FAD sing 180 n n C9 C9A FAD doub 181 n y C9 H9 FAD sing 182 n n C9A N10 FAD sing 183 n n N10 C10 FAD sing 184 n n N10 C1' FAD sing 185 n n C1' C2' FAD sing 186 n n C1' "H1'1" FAD sing 187 n n C1' "H1'2" FAD sing 188 n n C2' O2' FAD sing 189 n n C2' C3' FAD sing 190 n n C2' H2' FAD sing 191 n n O2' HO2' FAD sing 192 n n C3' O3' FAD sing 193 n n C3' C4' FAD sing 194 n n C3' H3' FAD sing 195 n n O3' HO3' FAD sing 196 n n C4' O4' FAD sing 197 n n C4' C5' FAD sing 198 n n C4' H4' FAD sing 199 n n O4' HO4' FAD sing 200 n n C5' O5' FAD sing 201 n n C5' "H5'1" FAD sing 202 n n C5' "H5'2" FAD sing 203 n n O5' P FAD sing 204 n n P O1P FAD doub 205 n n P O2P FAD sing 206 n n P O3P FAD sing 207 n n O2P HOP2 FAD sing 208 n n # _atom_sites.entry_id 6KGN _atom_sites.fract_transf_matrix[1][1] 0.008302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 901 901 GOL GOL . D 3 GOL A 1 902 902 GOL GOL . E 3 GOL A 1 903 903 GOL GOL . F 3 GOL A 1 904 904 GOL GOL . G 3 GOL A 1 905 905 GOL GOL . H 4 DJ0 A 1 906 1001 DJ0 XXX . I 5 FAD A 1 907 1001 FAD XXX . J 6 HOH A 1 1001 151 HOH HOH . J 6 HOH A 2 1002 13 HOH HOH . J 6 HOH A 3 1003 18 HOH HOH . J 6 HOH A 4 1004 1 HOH HOH . J 6 HOH A 5 1005 8 HOH HOH . J 6 HOH A 6 1006 150 HOH HOH . J 6 HOH A 7 1007 27 HOH HOH . J 6 HOH A 8 1008 137 HOH HOH . J 6 HOH A 9 1009 6 HOH HOH . J 6 HOH A 10 1010 22 HOH HOH . J 6 HOH A 11 1011 16 HOH HOH . J 6 HOH A 12 1012 162 HOH HOH . J 6 HOH A 13 1013 136 HOH HOH . J 6 HOH A 14 1014 5 HOH HOH . J 6 HOH A 15 1015 2 HOH HOH . J 6 HOH A 16 1016 30 HOH HOH . J 6 HOH A 17 1017 15 HOH HOH . J 6 HOH A 18 1018 33 HOH HOH . J 6 HOH A 19 1019 7 HOH HOH . J 6 HOH A 20 1020 148 HOH HOH . J 6 HOH A 21 1021 3 HOH HOH . J 6 HOH A 22 1022 10 HOH HOH . J 6 HOH A 23 1023 14 HOH HOH . J 6 HOH A 24 1024 26 HOH HOH . J 6 HOH A 25 1025 32 HOH HOH . J 6 HOH A 26 1026 163 HOH HOH . J 6 HOH A 27 1027 12 HOH HOH . J 6 HOH A 28 1028 35 HOH HOH . J 6 HOH A 29 1029 165 HOH HOH . J 6 HOH A 30 1030 9 HOH HOH . J 6 HOH A 31 1031 161 HOH HOH . J 6 HOH A 32 1032 17 HOH HOH . J 6 HOH A 33 1033 11 HOH HOH . J 6 HOH A 34 1034 4 HOH HOH . J 6 HOH A 35 1035 25 HOH HOH . J 6 HOH A 36 1036 28 HOH HOH . J 6 HOH A 37 1037 146 HOH HOH . J 6 HOH A 38 1038 144 HOH HOH . J 6 HOH A 39 1039 20 HOH HOH . J 6 HOH A 40 1040 138 HOH HOH . J 6 HOH A 41 1041 147 HOH HOH . J 6 HOH A 42 1042 31 HOH HOH . J 6 HOH A 43 1043 149 HOH HOH . J 6 HOH A 44 1044 24 HOH HOH . J 6 HOH A 45 1045 21 HOH HOH . J 6 HOH A 46 1046 19 HOH HOH . J 6 HOH A 47 1047 23 HOH HOH . J 6 HOH A 48 1048 29 HOH HOH . J 6 HOH A 49 1049 155 HOH HOH . J 6 HOH A 50 1050 145 HOH HOH . J 6 HOH A 51 1051 143 HOH HOH . J 6 HOH A 52 1052 139 HOH HOH . J 6 HOH A 53 1053 34 HOH HOH . J 6 HOH A 54 1054 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . I 5 6.59 -67.348 -28.854 1 56.84 ? PA FAD 907 A 1 HETATM 2 O O1A FAD . . . I 5 7.943 -66.822 -29.149 1 48.34 ? O1A FAD 907 A 1 HETATM 3 O O2A FAD . . . I 5 5.587 -67.752 -29.926 1 47.9 ? O2A FAD 907 A 1 HETATM 4 O O5B FAD . . . I 5 6.859 -68.676 -27.922 1 65.3 ? O5B FAD 907 A 1 HETATM 5 C C5B FAD . . . I 5 5.925 -69.766 -27.796 1 54.82 ? C5B FAD 907 A 1 HETATM 6 C C4B FAD . . . I 5 6.729 -71.006 -28.064 1 53.99 ? C4B FAD 907 A 1 HETATM 7 O O4B FAD . . . I 5 5.907 -72.163 -27.801 1 59.74 ? O4B FAD 907 A 1 HETATM 8 C C3B FAD . . . I 5 7.249 -71.159 -29.498 1 51.98 ? C3B FAD 907 A 1 HETATM 9 O O3B FAD . . . I 5 8.632 -71.502 -29.5 1 54.59 ? O3B FAD 907 A 1 HETATM 10 C C2B FAD . . . I 5 6.35 -72.265 -30.075 1 53.98 ? C2B FAD 907 A 1 HETATM 11 O O2B FAD . . . I 5 6.964 -73.045 -31.1 1 56.12 ? O2B FAD 907 A 1 HETATM 12 C C1B FAD . . . I 5 6.128 -73.103 -28.826 1 56.59 ? C1B FAD 907 A 1 HETATM 13 N N9A FAD . . . I 5 4.986 -74.007 -28.881 1 54.33 ? N9A FAD 907 A 1 HETATM 14 C C8A FAD . . . I 5 3.811 -73.821 -29.558 1 54.51 ? C8A FAD 907 A 1 HETATM 15 N N7A FAD . . . I 5 2.973 -74.822 -29.448 1 55.62 ? N7A FAD 907 A 1 HETATM 16 C C5A FAD . . . I 5 3.644 -75.731 -28.643 1 56.55 ? C5A FAD 907 A 1 HETATM 17 C C6A FAD . . . I 5 3.302 -77.008 -28.157 1 54.36 ? C6A FAD 907 A 1 HETATM 18 N N6A FAD . . . I 5 2.153 -77.631 -28.442 1 46.95 ? N6A FAD 907 A 1 HETATM 19 N N1A FAD . . . I 5 4.199 -77.644 -27.373 1 56.18 ? N1A FAD 907 A 1 HETATM 20 C C2A FAD . . . I 5 5.362 -77.042 -27.109 1 56.02 ? C2A FAD 907 A 1 HETATM 21 N N3A FAD . . . I 5 5.798 -75.849 -27.521 1 60.36 ? N3A FAD 907 A 1 HETATM 22 C C4A FAD . . . I 5 4.887 -75.236 -28.284 1 55.67 ? C4A FAD 907 A 1 HETATM 23 N N1 FAD . . . I 5 8.036 -57.691 -31.792 1 60.36 ? N1 FAD 907 A 1 HETATM 24 C C2 FAD . . . I 5 9.037 -56.77 -31.597 1 65.28 ? C2 FAD 907 A 1 HETATM 25 O O2 FAD . . . I 5 9.358 -56.385 -30.478 1 68.99 ? O2 FAD 907 A 1 HETATM 26 N N3 FAD . . . I 5 9.657 -56.295 -32.726 1 68.63 ? N3 FAD 907 A 1 HETATM 27 C C4 FAD . . . I 5 9.352 -56.613 -34.035 1 71.44 ? C4 FAD 907 A 1 HETATM 28 O O4 FAD . . . I 5 10.08 -56.257 -34.955 1 70.61 ? O4 FAD 907 A 1 HETATM 29 C C4X FAD . . . I 5 8.215 -57.455 -34.137 1 72.42 ? C4X FAD 907 A 1 HETATM 30 N N5 FAD . . . I 5 7.735 -57.769 -35.398 1 72.78 ? N5 FAD 907 A 1 HETATM 31 C C5X FAD . . . I 5 7.191 -59.063 -35.592 1 65.35 ? C5X FAD 907 A 1 HETATM 32 C C6 FAD . . . I 5 7.107 -59.633 -36.854 1 66.7 ? C6 FAD 907 A 1 HETATM 33 C C7 FAD . . . I 5 6.57 -60.903 -37.031 1 67.52 ? C7 FAD 907 A 1 HETATM 34 C C7M FAD . . . I 5 6.377 -61.424 -38.431 1 53.92 ? C7M FAD 907 A 1 HETATM 35 C C8 FAD . . . I 5 6.139 -61.64 -35.903 1 66.63 ? C8 FAD 907 A 1 HETATM 36 C C8M FAD . . . I 5 5.665 -63.066 -36.044 1 59.4 ? C8M FAD 907 A 1 HETATM 37 C C9 FAD . . . I 5 6.192 -61.055 -34.642 1 61.75 ? C9 FAD 907 A 1 HETATM 38 C C9A FAD . . . I 5 6.706 -59.77 -34.47 1 65.58 ? C9A FAD 907 A 1 HETATM 39 N N10 FAD . . . I 5 6.837 -59.192 -33.172 1 63.42 ? N10 FAD 907 A 1 HETATM 40 C C10 FAD . . . I 5 7.646 -58.069 -33.05 1 63.96 ? C10 FAD 907 A 1 HETATM 41 C C1' FAD . . . I 5 6.249 -59.865 -32.002 1 62.41 ? C1' FAD 907 A 1 HETATM 42 C C2' FAD . . . I 5 7.206 -60.76 -31.218 1 57.15 ? C2' FAD 907 A 1 HETATM 43 O O2' FAD . . . I 5 7.937 -61.569 -32.134 1 57.49 ? O2' FAD 907 A 1 HETATM 44 C C3' FAD . . . I 5 6.446 -61.711 -30.294 1 62.14 ? C3' FAD 907 A 1 HETATM 45 O O3' FAD . . . I 5 5.508 -60.998 -29.497 1 62.36 ? O3' FAD 907 A 1 HETATM 46 C C4' FAD . . . I 5 7.314 -62.552 -29.356 1 63.35 ? C4' FAD 907 A 1 HETATM 47 O O4' FAD . . . I 5 8.527 -62.978 -29.979 1 61.82 ? O4' FAD 907 A 1 HETATM 48 C C5' FAD . . . I 5 6.55 -63.78 -28.926 1 60.98 ? C5' FAD 907 A 1 HETATM 49 O O5' FAD . . . I 5 7.059 -64.237 -27.661 1 60.74 ? O5' FAD 907 A 1 HETATM 50 P P FAD . . . I 5 6.32 -65.334 -26.777 1 53.88 ? P FAD 907 A 1 HETATM 51 O O1P FAD . . . I 5 5.127 -64.841 -26.059 1 48.72 ? O1P FAD 907 A 1 HETATM 52 O O2P FAD . . . I 5 7.521 -65.926 -26.026 1 59.01 ? O2P FAD 907 A 1 HETATM 53 O O3P FAD . . . I 5 5.811 -66.395 -27.848 1 48.53 ? O3P FAD 907 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #