data_6KGP
#
_model_server_result.job_id            culn4w_3SErUMK8yH69EFg 
_model_server_result.datetime_utc      '2024-11-24 03:39:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kgp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":902}' 
#
_entry.id    6KGP 
#
_exptl.entry_id    6KGP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6KGP 
_cell.length_a            185.703 
_cell.length_b            185.703 
_cell.length_c            108.5 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KGP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 255 n n 
C1 C2 GOL sing 256 n n 
C1 H11 GOL sing 257 n n 
C1 H12 GOL sing 258 n n 
O1 HO1 GOL sing 259 n n 
C2 O2 GOL sing 260 n n 
C2 C3 GOL sing 261 n n 
C2 H2 GOL sing 262 n n 
O2 HO2 GOL sing 263 n n 
C3 O3 GOL sing 264 n n 
C3 H31 GOL sing 265 n n 
C3 H32 GOL sing 266 n n 
O3 HO3 GOL sing 267 n n 
#
_atom_sites.entry_id                     6KGP 
_atom_sites.fract_transf_matrix[1][1]    0.005385 
_atom_sites.fract_transf_matrix[1][2]    0.003109 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006218 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009217 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 901 901 GOL GOL . 
C 2 GOL A 1 902 902 GOL GOL . 
D 2 GOL A 1 903 903 GOL GOL . 
E 2 GOL A 1 904 904 GOL GOL . 
F 2 GOL A 1 905 905 GOL GOL . 
G 2 GOL A 1 906 906 GOL GOL . 
H 3 TLA A 1 907 910 TLA TLA . 
I 4 DJ0 A 1 908 1001 DJ0 XXX . 
J 5 FAD A 1 909 1001 FAD XXX . 
K 6 HOH A 1 1001 124 HOH HOH . 
K 6 HOH A 2 1002 36 HOH HOH . 
K 6 HOH A 3 1003 118 HOH HOH . 
K 6 HOH A 4 1004 120 HOH HOH . 
K 6 HOH A 5 1005 159 HOH HOH . 
K 6 HOH A 6 1006 12 HOH HOH . 
K 6 HOH A 7 1007 92 HOH HOH . 
K 6 HOH A 8 1008 76 HOH HOH . 
K 6 HOH A 9 1009 23 HOH HOH . 
K 6 HOH A 10 1010 22 HOH HOH . 
K 6 HOH A 11 1011 108 HOH HOH . 
K 6 HOH A 12 1012 54 HOH HOH . 
K 6 HOH A 13 1013 4 HOH HOH . 
K 6 HOH A 14 1014 47 HOH HOH . 
K 6 HOH A 15 1015 122 HOH HOH . 
K 6 HOH A 16 1016 126 HOH HOH . 
K 6 HOH A 17 1017 50 HOH HOH . 
K 6 HOH A 18 1018 27 HOH HOH . 
K 6 HOH A 19 1019 56 HOH HOH . 
K 6 HOH A 20 1020 16 HOH HOH . 
K 6 HOH A 21 1021 5 HOH HOH . 
K 6 HOH A 22 1022 48 HOH HOH . 
K 6 HOH A 23 1023 146 HOH HOH . 
K 6 HOH A 24 1024 96 HOH HOH . 
K 6 HOH A 25 1025 156 HOH HOH . 
K 6 HOH A 26 1026 58 HOH HOH . 
K 6 HOH A 27 1027 132 HOH HOH . 
K 6 HOH A 28 1028 179 HOH HOH . 
K 6 HOH A 29 1029 114 HOH HOH . 
K 6 HOH A 30 1030 66 HOH HOH . 
K 6 HOH A 31 1031 28 HOH HOH . 
K 6 HOH A 32 1032 82 HOH HOH . 
K 6 HOH A 33 1033 63 HOH HOH . 
K 6 HOH A 34 1034 38 HOH HOH . 
K 6 HOH A 35 1035 93 HOH HOH . 
K 6 HOH A 36 1036 43 HOH HOH . 
K 6 HOH A 37 1037 3 HOH HOH . 
K 6 HOH A 38 1038 101 HOH HOH . 
K 6 HOH A 39 1039 143 HOH HOH . 
K 6 HOH A 40 1040 7 HOH HOH . 
K 6 HOH A 41 1041 102 HOH HOH . 
K 6 HOH A 42 1042 59 HOH HOH . 
K 6 HOH A 43 1043 14 HOH HOH . 
K 6 HOH A 44 1044 151 HOH HOH . 
K 6 HOH A 45 1045 105 HOH HOH . 
K 6 HOH A 46 1046 77 HOH HOH . 
K 6 HOH A 47 1047 6 HOH HOH . 
K 6 HOH A 48 1048 21 HOH HOH . 
K 6 HOH A 49 1049 86 HOH HOH . 
K 6 HOH A 50 1050 31 HOH HOH . 
K 6 HOH A 51 1051 30 HOH HOH . 
K 6 HOH A 52 1052 88 HOH HOH . 
K 6 HOH A 53 1053 79 HOH HOH . 
K 6 HOH A 54 1054 178 HOH HOH . 
K 6 HOH A 55 1055 15 HOH HOH . 
K 6 HOH A 56 1056 162 HOH HOH . 
K 6 HOH A 57 1057 152 HOH HOH . 
K 6 HOH A 58 1058 49 HOH HOH . 
K 6 HOH A 59 1059 10 HOH HOH . 
K 6 HOH A 60 1060 78 HOH HOH . 
K 6 HOH A 61 1061 100 HOH HOH . 
K 6 HOH A 62 1062 144 HOH HOH . 
K 6 HOH A 63 1063 19 HOH HOH . 
K 6 HOH A 64 1064 17 HOH HOH . 
K 6 HOH A 65 1065 183 HOH HOH . 
K 6 HOH A 66 1066 163 HOH HOH . 
K 6 HOH A 67 1067 182 HOH HOH . 
K 6 HOH A 68 1068 147 HOH HOH . 
K 6 HOH A 69 1069 133 HOH HOH . 
K 6 HOH A 70 1070 1 HOH HOH . 
K 6 HOH A 71 1071 95 HOH HOH . 
K 6 HOH A 72 1072 166 HOH HOH . 
K 6 HOH A 73 1073 29 HOH HOH . 
K 6 HOH A 74 1074 39 HOH HOH . 
K 6 HOH A 75 1075 67 HOH HOH . 
K 6 HOH A 76 1076 18 HOH HOH . 
K 6 HOH A 77 1077 70 HOH HOH . 
K 6 HOH A 78 1078 85 HOH HOH . 
K 6 HOH A 79 1079 2 HOH HOH . 
K 6 HOH A 80 1080 167 HOH HOH . 
K 6 HOH A 81 1081 34 HOH HOH . 
K 6 HOH A 82 1082 181 HOH HOH . 
K 6 HOH A 83 1083 137 HOH HOH . 
K 6 HOH A 84 1084 13 HOH HOH . 
K 6 HOH A 85 1085 180 HOH HOH . 
K 6 HOH A 86 1086 160 HOH HOH . 
K 6 HOH A 87 1087 171 HOH HOH . 
K 6 HOH A 88 1088 62 HOH HOH . 
K 6 HOH A 89 1089 52 HOH HOH . 
K 6 HOH A 90 1090 121 HOH HOH . 
K 6 HOH A 91 1091 168 HOH HOH . 
K 6 HOH A 92 1092 65 HOH HOH . 
K 6 HOH A 93 1093 135 HOH HOH . 
K 6 HOH A 94 1094 8 HOH HOH . 
K 6 HOH A 95 1095 42 HOH HOH . 
K 6 HOH A 96 1096 68 HOH HOH . 
K 6 HOH A 97 1097 186 HOH HOH . 
K 6 HOH A 98 1098 94 HOH HOH . 
K 6 HOH A 99 1099 98 HOH HOH . 
K 6 HOH A 100 1100 91 HOH HOH . 
K 6 HOH A 101 1101 45 HOH HOH . 
K 6 HOH A 102 1102 37 HOH HOH . 
K 6 HOH A 103 1103 138 HOH HOH . 
K 6 HOH A 104 1104 104 HOH HOH . 
K 6 HOH A 105 1105 71 HOH HOH . 
K 6 HOH A 106 1106 158 HOH HOH . 
K 6 HOH A 107 1107 150 HOH HOH . 
K 6 HOH A 108 1108 154 HOH HOH . 
K 6 HOH A 109 1109 142 HOH HOH . 
K 6 HOH A 110 1110 73 HOH HOH . 
K 6 HOH A 111 1111 103 HOH HOH . 
K 6 HOH A 112 1112 84 HOH HOH . 
K 6 HOH A 113 1113 139 HOH HOH . 
K 6 HOH A 114 1114 20 HOH HOH . 
K 6 HOH A 115 1115 149 HOH HOH . 
K 6 HOH A 116 1116 35 HOH HOH . 
K 6 HOH A 117 1117 112 HOH HOH . 
K 6 HOH A 118 1118 177 HOH HOH . 
K 6 HOH A 119 1119 141 HOH HOH . 
K 6 HOH A 120 1120 87 HOH HOH . 
K 6 HOH A 121 1121 106 HOH HOH . 
K 6 HOH A 122 1122 172 HOH HOH . 
K 6 HOH A 123 1123 32 HOH HOH . 
K 6 HOH A 124 1124 60 HOH HOH . 
K 6 HOH A 125 1125 97 HOH HOH . 
K 6 HOH A 126 1126 33 HOH HOH . 
K 6 HOH A 127 1127 173 HOH HOH . 
K 6 HOH A 128 1128 164 HOH HOH . 
K 6 HOH A 129 1129 11 HOH HOH . 
K 6 HOH A 130 1130 72 HOH HOH . 
K 6 HOH A 131 1131 113 HOH HOH . 
K 6 HOH A 132 1132 153 HOH HOH . 
K 6 HOH A 133 1133 89 HOH HOH . 
K 6 HOH A 134 1134 170 HOH HOH . 
K 6 HOH A 135 1135 110 HOH HOH . 
K 6 HOH A 136 1136 148 HOH HOH . 
K 6 HOH A 137 1137 174 HOH HOH . 
K 6 HOH A 138 1138 46 HOH HOH . 
K 6 HOH A 139 1139 187 HOH HOH . 
K 6 HOH A 140 1140 169 HOH HOH . 
K 6 HOH A 141 1141 69 HOH HOH . 
K 6 HOH A 142 1142 41 HOH HOH . 
K 6 HOH A 143 1143 81 HOH HOH . 
K 6 HOH A 144 1144 44 HOH HOH . 
K 6 HOH A 145 1145 117 HOH HOH . 
K 6 HOH A 146 1146 26 HOH HOH . 
K 6 HOH A 147 1147 189 HOH HOH . 
K 6 HOH A 148 1148 123 HOH HOH . 
K 6 HOH A 149 1149 83 HOH HOH . 
K 6 HOH A 150 1150 111 HOH HOH . 
K 6 HOH A 151 1151 61 HOH HOH . 
K 6 HOH A 152 1152 175 HOH HOH . 
K 6 HOH A 153 1153 9 HOH HOH . 
K 6 HOH A 154 1154 115 HOH HOH . 
K 6 HOH A 155 1155 130 HOH HOH . 
K 6 HOH A 156 1156 80 HOH HOH . 
K 6 HOH A 157 1157 176 HOH HOH . 
K 6 HOH A 158 1158 40 HOH HOH . 
K 6 HOH A 159 1159 107 HOH HOH . 
K 6 HOH A 160 1160 55 HOH HOH . 
K 6 HOH A 161 1161 25 HOH HOH . 
K 6 HOH A 162 1162 129 HOH HOH . 
K 6 HOH A 163 1163 188 HOH HOH . 
K 6 HOH A 164 1164 51 HOH HOH . 
K 6 HOH A 165 1165 157 HOH HOH . 
K 6 HOH A 166 1166 53 HOH HOH . 
K 6 HOH A 167 1167 140 HOH HOH . 
K 6 HOH A 168 1168 136 HOH HOH . 
K 6 HOH A 169 1169 190 HOH HOH . 
K 6 HOH A 170 1170 131 HOH HOH . 
K 6 HOH A 171 1171 161 HOH HOH . 
K 6 HOH A 172 1172 155 HOH HOH . 
K 6 HOH A 173 1173 109 HOH HOH . 
K 6 HOH A 174 1174 75 HOH HOH . 
K 6 HOH A 175 1175 184 HOH HOH . 
K 6 HOH A 176 1176 145 HOH HOH . 
K 6 HOH A 177 1177 185 HOH HOH . 
K 6 HOH A 178 1178 165 HOH HOH . 
K 6 HOH A 179 1179 24 HOH HOH . 
K 6 HOH A 180 1180 90 HOH HOH . 
K 6 HOH A 181 1181 134 HOH HOH . 
K 6 HOH A 182 1182 64 HOH HOH . 
K 6 HOH A 183 1183 116 HOH HOH . 
K 6 HOH A 184 1184 99 HOH HOH . 
K 6 HOH A 185 1185 57 HOH HOH . 
K 6 HOH A 186 1186 125 HOH HOH . 
K 6 HOH A 187 1187 119 HOH HOH . 
K 6 HOH A 188 1188 74 HOH HOH . 
K 6 HOH A 189 1189 128 HOH HOH . 
K 6 HOH A 190 1190 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 19.482 51.246 -22.596 1 64.26 ? C1 GOL 902 A 1 
HETATM 2 O O1 GOL . . . C 2 18.511 51.234 -21.592 1 46.71 ? O1 GOL 902 A 1 
HETATM 3 C C2 GOL . . . C 2 19.405 49.834 -23.17 1 70.4 ? C2 GOL 902 A 1 
HETATM 4 O O2 GOL . . . C 2 19.308 48.921 -22.133 1 64.32 ? O2 GOL 902 A 1 
HETATM 5 C C3 GOL . . . C 2 20.675 49.664 -24.097 1 66.39 ? C3 GOL 902 A 1 
HETATM 6 O O3 GOL . . . C 2 20.464 48.543 -24.926 1 63.75 ? O3 GOL 902 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#