data_6KGQ
#
_model_server_result.job_id            kwOb85Cld8951rCNsRtleA 
_model_server_result.datetime_utc      '2024-11-27 21:07:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kgq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":901}' 
#
_entry.id    6KGQ 
#
_exptl.entry_id    6KGQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6KGQ 
_cell.length_a            185.268 
_cell.length_b            185.268 
_cell.length_c            109.327 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KGQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 362 n n 
C1 H11 MPD sing 363 n n 
C1 H12 MPD sing 364 n n 
C1 H13 MPD sing 365 n n 
C2 O2 MPD sing 366 n n 
C2 CM MPD sing 367 n n 
C2 C3 MPD sing 368 n n 
O2 HO2 MPD sing 369 n n 
CM HM1 MPD sing 370 n n 
CM HM2 MPD sing 371 n n 
CM HM3 MPD sing 372 n n 
C3 C4 MPD sing 373 n n 
C3 H31 MPD sing 374 n n 
C3 H32 MPD sing 375 n n 
C4 O4 MPD sing 376 n n 
C4 C5 MPD sing 377 n n 
C4 H4 MPD sing 378 n n 
O4 HO4 MPD sing 379 n n 
C5 H51 MPD sing 380 n n 
C5 H52 MPD sing 381 n n 
C5 H53 MPD sing 382 n n 
#
_atom_sites.entry_id                     6KGQ 
_atom_sites.fract_transf_matrix[1][1]    0.005398 
_atom_sites.fract_transf_matrix[1][2]    0.003116 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006233 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009147 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MPD A 1 901 1002 MPD MPD . 
C 3 DJC A 1 902 1001 DJC XXX . 
D 4 FAD A 1 903 1001 FAD XXX . 
E 5 HOH A 1 1001 127 HOH HOH . 
E 5 HOH A 2 1002 219 HOH HOH . 
E 5 HOH A 3 1003 5 HOH HOH . 
E 5 HOH A 4 1004 23 HOH HOH . 
E 5 HOH A 5 1005 65 HOH HOH . 
E 5 HOH A 6 1006 27 HOH HOH . 
E 5 HOH A 7 1007 101 HOH HOH . 
E 5 HOH A 8 1008 214 HOH HOH . 
E 5 HOH A 9 1009 159 HOH HOH . 
E 5 HOH A 10 1010 12 HOH HOH . 
E 5 HOH A 11 1011 22 HOH HOH . 
E 5 HOH A 12 1012 86 HOH HOH . 
E 5 HOH A 13 1013 88 HOH HOH . 
E 5 HOH A 14 1014 117 HOH HOH . 
E 5 HOH A 15 1015 202 HOH HOH . 
E 5 HOH A 16 1016 108 HOH HOH . 
E 5 HOH A 17 1017 132 HOH HOH . 
E 5 HOH A 18 1018 9 HOH HOH . 
E 5 HOH A 19 1019 41 HOH HOH . 
E 5 HOH A 20 1020 58 HOH HOH . 
E 5 HOH A 21 1021 32 HOH HOH . 
E 5 HOH A 22 1022 95 HOH HOH . 
E 5 HOH A 23 1023 69 HOH HOH . 
E 5 HOH A 24 1024 167 HOH HOH . 
E 5 HOH A 25 1025 145 HOH HOH . 
E 5 HOH A 26 1026 93 HOH HOH . 
E 5 HOH A 27 1027 1 HOH HOH . 
E 5 HOH A 28 1028 10 HOH HOH . 
E 5 HOH A 29 1029 45 HOH HOH . 
E 5 HOH A 30 1030 111 HOH HOH . 
E 5 HOH A 31 1031 37 HOH HOH . 
E 5 HOH A 32 1032 35 HOH HOH . 
E 5 HOH A 33 1033 39 HOH HOH . 
E 5 HOH A 34 1034 78 HOH HOH . 
E 5 HOH A 35 1035 2 HOH HOH . 
E 5 HOH A 36 1036 6 HOH HOH . 
E 5 HOH A 37 1037 142 HOH HOH . 
E 5 HOH A 38 1038 147 HOH HOH . 
E 5 HOH A 39 1039 123 HOH HOH . 
E 5 HOH A 40 1040 70 HOH HOH . 
E 5 HOH A 41 1041 196 HOH HOH . 
E 5 HOH A 42 1042 120 HOH HOH . 
E 5 HOH A 43 1043 18 HOH HOH . 
E 5 HOH A 44 1044 97 HOH HOH . 
E 5 HOH A 45 1045 49 HOH HOH . 
E 5 HOH A 46 1046 40 HOH HOH . 
E 5 HOH A 47 1047 195 HOH HOH . 
E 5 HOH A 48 1048 63 HOH HOH . 
E 5 HOH A 49 1049 50 HOH HOH . 
E 5 HOH A 50 1050 42 HOH HOH . 
E 5 HOH A 51 1051 89 HOH HOH . 
E 5 HOH A 52 1052 55 HOH HOH . 
E 5 HOH A 53 1053 11 HOH HOH . 
E 5 HOH A 54 1054 169 HOH HOH . 
E 5 HOH A 55 1055 62 HOH HOH . 
E 5 HOH A 56 1056 30 HOH HOH . 
E 5 HOH A 57 1057 16 HOH HOH . 
E 5 HOH A 58 1058 60 HOH HOH . 
E 5 HOH A 59 1059 105 HOH HOH . 
E 5 HOH A 60 1060 128 HOH HOH . 
E 5 HOH A 61 1061 28 HOH HOH . 
E 5 HOH A 62 1062 109 HOH HOH . 
E 5 HOH A 63 1063 172 HOH HOH . 
E 5 HOH A 64 1064 151 HOH HOH . 
E 5 HOH A 65 1065 31 HOH HOH . 
E 5 HOH A 66 1066 61 HOH HOH . 
E 5 HOH A 67 1067 76 HOH HOH . 
E 5 HOH A 68 1068 185 HOH HOH . 
E 5 HOH A 69 1069 163 HOH HOH . 
E 5 HOH A 70 1070 21 HOH HOH . 
E 5 HOH A 71 1071 38 HOH HOH . 
E 5 HOH A 72 1072 139 HOH HOH . 
E 5 HOH A 73 1073 24 HOH HOH . 
E 5 HOH A 74 1074 124 HOH HOH . 
E 5 HOH A 75 1075 131 HOH HOH . 
E 5 HOH A 76 1076 126 HOH HOH . 
E 5 HOH A 77 1077 130 HOH HOH . 
E 5 HOH A 78 1078 83 HOH HOH . 
E 5 HOH A 79 1079 144 HOH HOH . 
E 5 HOH A 80 1080 54 HOH HOH . 
E 5 HOH A 81 1081 67 HOH HOH . 
E 5 HOH A 82 1082 26 HOH HOH . 
E 5 HOH A 83 1083 158 HOH HOH . 
E 5 HOH A 84 1084 113 HOH HOH . 
E 5 HOH A 85 1085 43 HOH HOH . 
E 5 HOH A 86 1086 122 HOH HOH . 
E 5 HOH A 87 1087 44 HOH HOH . 
E 5 HOH A 88 1088 199 HOH HOH . 
E 5 HOH A 89 1089 79 HOH HOH . 
E 5 HOH A 90 1090 8 HOH HOH . 
E 5 HOH A 91 1091 77 HOH HOH . 
E 5 HOH A 92 1092 17 HOH HOH . 
E 5 HOH A 93 1093 52 HOH HOH . 
E 5 HOH A 94 1094 90 HOH HOH . 
E 5 HOH A 95 1095 53 HOH HOH . 
E 5 HOH A 96 1096 19 HOH HOH . 
E 5 HOH A 97 1097 102 HOH HOH . 
E 5 HOH A 98 1098 66 HOH HOH . 
E 5 HOH A 99 1099 48 HOH HOH . 
E 5 HOH A 100 1100 15 HOH HOH . 
E 5 HOH A 101 1101 29 HOH HOH . 
E 5 HOH A 102 1102 7 HOH HOH . 
E 5 HOH A 103 1103 106 HOH HOH . 
E 5 HOH A 104 1104 75 HOH HOH . 
E 5 HOH A 105 1105 125 HOH HOH . 
E 5 HOH A 106 1106 20 HOH HOH . 
E 5 HOH A 107 1107 94 HOH HOH . 
E 5 HOH A 108 1108 51 HOH HOH . 
E 5 HOH A 109 1109 72 HOH HOH . 
E 5 HOH A 110 1110 82 HOH HOH . 
E 5 HOH A 111 1111 25 HOH HOH . 
E 5 HOH A 112 1112 141 HOH HOH . 
E 5 HOH A 113 1113 84 HOH HOH . 
E 5 HOH A 114 1114 175 HOH HOH . 
E 5 HOH A 115 1115 81 HOH HOH . 
E 5 HOH A 116 1116 59 HOH HOH . 
E 5 HOH A 117 1117 34 HOH HOH . 
E 5 HOH A 118 1118 119 HOH HOH . 
E 5 HOH A 119 1119 100 HOH HOH . 
E 5 HOH A 120 1120 168 HOH HOH . 
E 5 HOH A 121 1121 33 HOH HOH . 
E 5 HOH A 122 1122 46 HOH HOH . 
E 5 HOH A 123 1123 148 HOH HOH . 
E 5 HOH A 124 1124 114 HOH HOH . 
E 5 HOH A 125 1125 146 HOH HOH . 
E 5 HOH A 126 1126 104 HOH HOH . 
E 5 HOH A 127 1127 184 HOH HOH . 
E 5 HOH A 128 1128 194 HOH HOH . 
E 5 HOH A 129 1129 91 HOH HOH . 
E 5 HOH A 130 1130 121 HOH HOH . 
E 5 HOH A 131 1131 173 HOH HOH . 
E 5 HOH A 132 1132 92 HOH HOH . 
E 5 HOH A 133 1133 71 HOH HOH . 
E 5 HOH A 134 1134 14 HOH HOH . 
E 5 HOH A 135 1135 47 HOH HOH . 
E 5 HOH A 136 1136 217 HOH HOH . 
E 5 HOH A 137 1137 36 HOH HOH . 
E 5 HOH A 138 1138 96 HOH HOH . 
E 5 HOH A 139 1139 157 HOH HOH . 
E 5 HOH A 140 1140 138 HOH HOH . 
E 5 HOH A 141 1141 183 HOH HOH . 
E 5 HOH A 142 1142 57 HOH HOH . 
E 5 HOH A 143 1143 64 HOH HOH . 
E 5 HOH A 144 1144 73 HOH HOH . 
E 5 HOH A 145 1145 107 HOH HOH . 
E 5 HOH A 146 1146 164 HOH HOH . 
E 5 HOH A 147 1147 118 HOH HOH . 
E 5 HOH A 148 1148 193 HOH HOH . 
E 5 HOH A 149 1149 203 HOH HOH . 
E 5 HOH A 150 1150 74 HOH HOH . 
E 5 HOH A 151 1151 181 HOH HOH . 
E 5 HOH A 152 1152 87 HOH HOH . 
E 5 HOH A 153 1153 211 HOH HOH . 
E 5 HOH A 154 1154 98 HOH HOH . 
E 5 HOH A 155 1155 208 HOH HOH . 
E 5 HOH A 156 1156 56 HOH HOH . 
E 5 HOH A 157 1157 85 HOH HOH . 
E 5 HOH A 158 1158 68 HOH HOH . 
E 5 HOH A 159 1159 99 HOH HOH . 
E 5 HOH A 160 1160 115 HOH HOH . 
E 5 HOH A 161 1161 116 HOH HOH . 
E 5 HOH A 162 1162 216 HOH HOH . 
E 5 HOH A 163 1163 80 HOH HOH . 
E 5 HOH A 164 1164 218 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . B 2 34.906 -56.535 11.279 1 76.77 ? C1 MPD 901 A 1 
HETATM 2 C C2 MPD . . . B 2 35.345 -57.799 12.008 1 77.15 ? C2 MPD 901 A 1 
HETATM 3 O O2 MPD . . . B 2 36.714 -58.083 11.646 1 79.02 ? O2 MPD 901 A 1 
HETATM 4 C CM MPD . . . B 2 35.367 -57.418 13.478 1 73.3 ? CM MPD 901 A 1 
HETATM 5 C C3 MPD . . . B 2 34.446 -59.049 11.837 1 76.38 ? C3 MPD 901 A 1 
HETATM 6 C C4 MPD . . . B 2 33.894 -59.485 10.453 1 76.86 ? C4 MPD 901 A 1 
HETATM 7 O O4 MPD . . . B 2 33.884 -58.464 9.475 1 69.43 ? O4 MPD 901 A 1 
HETATM 8 C C5 MPD . . . B 2 34.603 -60.714 9.87 1 75.55 ? C5 MPD 901 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#