data_6KGR # _model_server_result.job_id -n4sVNdmhWhBPHB0zioD5w _model_server_result.datetime_utc '2024-11-24 04:25:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kgr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 6KGR # _exptl.entry_id 6KGR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6KGR _cell.length_a 185.268 _cell.length_b 185.268 _cell.length_c 109.327 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KGR _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 362 n n C1 H11 MPD sing 363 n n C1 H12 MPD sing 364 n n C1 H13 MPD sing 365 n n C2 O2 MPD sing 366 n n C2 CM MPD sing 367 n n C2 C3 MPD sing 368 n n O2 HO2 MPD sing 369 n n CM HM1 MPD sing 370 n n CM HM2 MPD sing 371 n n CM HM3 MPD sing 372 n n C3 C4 MPD sing 373 n n C3 H31 MPD sing 374 n n C3 H32 MPD sing 375 n n C4 O4 MPD sing 376 n n C4 C5 MPD sing 377 n n C4 H4 MPD sing 378 n n O4 HO4 MPD sing 379 n n C5 H51 MPD sing 380 n n C5 H52 MPD sing 381 n n C5 H53 MPD sing 382 n n # _atom_sites.entry_id 6KGR _atom_sites.fract_transf_matrix[1][1] 0.005398 _atom_sites.fract_transf_matrix[1][2] 0.003116 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006233 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 901 1002 MPD MPD . C 3 DJC A 1 902 1001 DJC XXX . D 4 FAD A 1 903 1001 FAD XXX . E 5 HOH A 1 1101 219 HOH HOH . E 5 HOH A 2 1102 127 HOH HOH . E 5 HOH A 3 1103 5 HOH HOH . E 5 HOH A 4 1104 23 HOH HOH . E 5 HOH A 5 1105 65 HOH HOH . E 5 HOH A 6 1106 214 HOH HOH . E 5 HOH A 7 1107 22 HOH HOH . E 5 HOH A 8 1108 101 HOH HOH . E 5 HOH A 9 1109 27 HOH HOH . E 5 HOH A 10 1110 159 HOH HOH . E 5 HOH A 11 1111 12 HOH HOH . E 5 HOH A 12 1112 202 HOH HOH . E 5 HOH A 13 1113 117 HOH HOH . E 5 HOH A 14 1114 86 HOH HOH . E 5 HOH A 15 1115 88 HOH HOH . E 5 HOH A 16 1116 108 HOH HOH . E 5 HOH A 17 1117 132 HOH HOH . E 5 HOH A 18 1118 9 HOH HOH . E 5 HOH A 19 1119 32 HOH HOH . E 5 HOH A 20 1120 41 HOH HOH . E 5 HOH A 21 1121 58 HOH HOH . E 5 HOH A 22 1122 69 HOH HOH . E 5 HOH A 23 1123 95 HOH HOH . E 5 HOH A 24 1124 167 HOH HOH . E 5 HOH A 25 1125 145 HOH HOH . E 5 HOH A 26 1126 93 HOH HOH . E 5 HOH A 27 1127 1 HOH HOH . E 5 HOH A 28 1128 111 HOH HOH . E 5 HOH A 29 1129 45 HOH HOH . E 5 HOH A 30 1130 10 HOH HOH . E 5 HOH A 31 1131 37 HOH HOH . E 5 HOH A 32 1132 35 HOH HOH . E 5 HOH A 33 1133 2 HOH HOH . E 5 HOH A 34 1134 142 HOH HOH . E 5 HOH A 35 1135 39 HOH HOH . E 5 HOH A 36 1136 78 HOH HOH . E 5 HOH A 37 1137 6 HOH HOH . E 5 HOH A 38 1138 147 HOH HOH . E 5 HOH A 39 1139 196 HOH HOH . E 5 HOH A 40 1140 70 HOH HOH . E 5 HOH A 41 1141 120 HOH HOH . E 5 HOH A 42 1142 49 HOH HOH . E 5 HOH A 43 1143 97 HOH HOH . E 5 HOH A 44 1144 40 HOH HOH . E 5 HOH A 45 1145 195 HOH HOH . E 5 HOH A 46 1146 89 HOH HOH . E 5 HOH A 47 1147 63 HOH HOH . E 5 HOH A 48 1148 18 HOH HOH . E 5 HOH A 49 1149 42 HOH HOH . E 5 HOH A 50 1150 123 HOH HOH . E 5 HOH A 51 1151 62 HOH HOH . E 5 HOH A 52 1152 50 HOH HOH . E 5 HOH A 53 1153 30 HOH HOH . E 5 HOH A 54 1154 55 HOH HOH . E 5 HOH A 55 1155 11 HOH HOH . E 5 HOH A 56 1156 16 HOH HOH . E 5 HOH A 57 1157 60 HOH HOH . E 5 HOH A 58 1158 169 HOH HOH . E 5 HOH A 59 1159 109 HOH HOH . E 5 HOH A 60 1160 105 HOH HOH . E 5 HOH A 61 1161 151 HOH HOH . E 5 HOH A 62 1162 28 HOH HOH . E 5 HOH A 63 1163 31 HOH HOH . E 5 HOH A 64 1164 172 HOH HOH . E 5 HOH A 65 1165 61 HOH HOH . E 5 HOH A 66 1166 128 HOH HOH . E 5 HOH A 67 1167 76 HOH HOH . E 5 HOH A 68 1168 185 HOH HOH . E 5 HOH A 69 1169 163 HOH HOH . E 5 HOH A 70 1170 38 HOH HOH . E 5 HOH A 71 1171 126 HOH HOH . E 5 HOH A 72 1172 24 HOH HOH . E 5 HOH A 73 1173 21 HOH HOH . E 5 HOH A 74 1174 139 HOH HOH . E 5 HOH A 75 1175 131 HOH HOH . E 5 HOH A 76 1176 124 HOH HOH . E 5 HOH A 77 1177 144 HOH HOH . E 5 HOH A 78 1178 130 HOH HOH . E 5 HOH A 79 1179 67 HOH HOH . E 5 HOH A 80 1180 54 HOH HOH . E 5 HOH A 81 1181 43 HOH HOH . E 5 HOH A 82 1182 26 HOH HOH . E 5 HOH A 83 1183 199 HOH HOH . E 5 HOH A 84 1184 122 HOH HOH . E 5 HOH A 85 1185 83 HOH HOH . E 5 HOH A 86 1186 113 HOH HOH . E 5 HOH A 87 1187 79 HOH HOH . E 5 HOH A 88 1188 158 HOH HOH . E 5 HOH A 89 1189 77 HOH HOH . E 5 HOH A 90 1190 8 HOH HOH . E 5 HOH A 91 1191 44 HOH HOH . E 5 HOH A 92 1192 17 HOH HOH . E 5 HOH A 93 1193 52 HOH HOH . E 5 HOH A 94 1194 19 HOH HOH . E 5 HOH A 95 1195 90 HOH HOH . E 5 HOH A 96 1196 53 HOH HOH . E 5 HOH A 97 1197 15 HOH HOH . E 5 HOH A 98 1198 29 HOH HOH . E 5 HOH A 99 1199 66 HOH HOH . E 5 HOH A 100 1200 106 HOH HOH . E 5 HOH A 101 1201 48 HOH HOH . E 5 HOH A 102 1202 75 HOH HOH . E 5 HOH A 103 1203 125 HOH HOH . E 5 HOH A 104 1204 102 HOH HOH . E 5 HOH A 105 1205 7 HOH HOH . E 5 HOH A 106 1206 20 HOH HOH . E 5 HOH A 107 1207 94 HOH HOH . E 5 HOH A 108 1208 51 HOH HOH . E 5 HOH A 109 1209 25 HOH HOH . E 5 HOH A 110 1210 84 HOH HOH . E 5 HOH A 111 1211 59 HOH HOH . E 5 HOH A 112 1212 72 HOH HOH . E 5 HOH A 113 1213 119 HOH HOH . E 5 HOH A 114 1214 81 HOH HOH . E 5 HOH A 115 1215 141 HOH HOH . E 5 HOH A 116 1216 100 HOH HOH . E 5 HOH A 117 1217 34 HOH HOH . E 5 HOH A 118 1218 175 HOH HOH . E 5 HOH A 119 1219 82 HOH HOH . E 5 HOH A 120 1220 148 HOH HOH . E 5 HOH A 121 1221 168 HOH HOH . E 5 HOH A 122 1222 33 HOH HOH . E 5 HOH A 123 1223 146 HOH HOH . E 5 HOH A 124 1224 46 HOH HOH . E 5 HOH A 125 1225 104 HOH HOH . E 5 HOH A 126 1226 114 HOH HOH . E 5 HOH A 127 1227 71 HOH HOH . E 5 HOH A 128 1228 121 HOH HOH . E 5 HOH A 129 1229 92 HOH HOH . E 5 HOH A 130 1230 173 HOH HOH . E 5 HOH A 131 1231 184 HOH HOH . E 5 HOH A 132 1232 91 HOH HOH . E 5 HOH A 133 1233 14 HOH HOH . E 5 HOH A 134 1234 194 HOH HOH . E 5 HOH A 135 1235 47 HOH HOH . E 5 HOH A 136 1236 96 HOH HOH . E 5 HOH A 137 1237 157 HOH HOH . E 5 HOH A 138 1238 217 HOH HOH . E 5 HOH A 139 1239 36 HOH HOH . E 5 HOH A 140 1240 183 HOH HOH . E 5 HOH A 141 1241 138 HOH HOH . E 5 HOH A 142 1242 57 HOH HOH . E 5 HOH A 143 1243 64 HOH HOH . E 5 HOH A 144 1244 73 HOH HOH . E 5 HOH A 145 1245 107 HOH HOH . E 5 HOH A 146 1246 164 HOH HOH . E 5 HOH A 147 1247 118 HOH HOH . E 5 HOH A 148 1248 193 HOH HOH . E 5 HOH A 149 1249 203 HOH HOH . E 5 HOH A 150 1250 74 HOH HOH . E 5 HOH A 151 1251 181 HOH HOH . E 5 HOH A 152 1252 87 HOH HOH . E 5 HOH A 153 1253 211 HOH HOH . E 5 HOH A 154 1254 98 HOH HOH . E 5 HOH A 155 1255 208 HOH HOH . E 5 HOH A 156 1256 56 HOH HOH . E 5 HOH A 157 1257 85 HOH HOH . E 5 HOH A 158 1258 68 HOH HOH . E 5 HOH A 159 1259 99 HOH HOH . E 5 HOH A 160 1260 115 HOH HOH . E 5 HOH A 161 1261 116 HOH HOH . E 5 HOH A 162 1262 216 HOH HOH . E 5 HOH A 163 1263 80 HOH HOH . E 5 HOH A 164 1264 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . B 2 34.918 -56.514 11.277 1 77.49 ? C1 MPD 901 A 1 HETATM 2 C C2 MPD . . . B 2 35.344 -57.782 12.01 1 77.13 ? C2 MPD 901 A 1 HETATM 3 O O2 MPD . . . B 2 36.711 -58.082 11.653 1 79.18 ? O2 MPD 901 A 1 HETATM 4 C CM MPD . . . B 2 35.369 -57.401 13.48 1 73 ? CM MPD 901 A 1 HETATM 5 C C3 MPD . . . B 2 34.436 -59.026 11.839 1 76.63 ? C3 MPD 901 A 1 HETATM 6 C C4 MPD . . . B 2 33.893 -59.468 10.453 1 77.1 ? C4 MPD 901 A 1 HETATM 7 O O4 MPD . . . B 2 33.893 -58.449 9.473 1 69.34 ? O4 MPD 901 A 1 HETATM 8 C C5 MPD . . . B 2 34.605 -60.7 9.882 1 76 ? C5 MPD 901 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #