data_6KGS # _model_server_result.job_id rnvLqmrKOdzaHe6LhpDQCw _model_server_result.datetime_utc '2024-11-02 06:30:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kgs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6KGS # _exptl.entry_id 6KGS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.478 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.56 _cell.angle_gamma 90 _cell.entry_id 6KGS _cell.length_a 96.77 _cell.length_b 85.11 _cell.length_c 90.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KGS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 486 A CYS 603 1_555 A SG CYS 488 A CYS 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? covale ? covale1 A OG SER 269 A SER 386 1_555 B C1 MER . A MER 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? metalc ? metalc1 A NE2 HIS 146 A HIS 263 1_555 D CO CO . A CO 703 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 A NE2 HIS 185 A HIS 302 1_555 D CO CO . A CO 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc3 A NE2 HIS 535 A HIS 652 1_555 C CO CO . A CO 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc4 A NE2 HIS 535 A HIS 652 1_555 C CO CO . A CO 702 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc5 C CO CO . A CO 702 1_555 E O HOH . A HOH 870 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc6 C CO CO . A CO 702 1_555 E O HOH . A HOH 870 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc7 C CO CO . A CO 702 1_555 E O HOH . A HOH 896 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc8 C CO CO . A CO 702 1_555 E O HOH . A HOH 896 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc9 D CO CO . A CO 703 1_555 E O HOH . A HOH 811 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc10 D CO CO . A CO 703 1_555 E O HOH . A HOH 819 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? metalc ? metalc11 D CO CO . A CO 703 1_555 E O HOH . A HOH 880 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.703 ? metalc ? metalc12 D CO CO . A CO 703 1_555 E O HOH . A HOH 928 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? # _chem_comp.formula 'C17 H27 N3 O5 S' _chem_comp.formula_weight 385.478 _chem_comp.id MER _chem_comp.mon_nstd_flag . _chem_comp.name '(4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Meropenem, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O6 MER doub 218 n n C1 C3 MER sing 219 n n C1 H1 MER sing 220 n n C5 C2 MER doub 221 n n C2 C18 MER sing 222 n n C2 S14 MER sing 223 n n C4 C3 MER sing 224 n n C3 C7 MER sing 225 n n C3 H3 MER sing 226 n n N10 C4 MER sing 227 n n C4 C18 MER sing 228 n n C4 H4 MER sing 229 n n C11 C5 MER sing 230 n n N10 C5 MER sing 231 n n O8 C7 MER sing 232 n n C7 C9 MER sing 233 n n C7 H7 MER sing 234 n n O8 HO8 MER sing 235 n n C9 H9 MER sing 236 n n C9 H9A MER sing 237 n n C9 H9B MER sing 238 n n N10 HN10 MER sing 239 n n O13 C11 MER doub 240 n n C11 O12 MER sing 241 n n O12 HO12 MER sing 242 n n S14 C15 MER sing 243 n n C16 C15 MER sing 244 n n C15 C21 MER sing 245 n n C15 H15 MER sing 246 n n C16 C17 MER sing 247 n n C16 H16 MER sing 248 n n C16 H16A MER sing 249 n n C22 C17 MER sing 250 n n C17 N19 MER sing 251 n n C17 H17 MER sing 252 n n C18 C20 MER sing 253 n n C18 H18 MER sing 254 n n N19 C21 MER sing 255 n n N19 HN19 MER sing 256 n n C20 H20 MER sing 257 n n C20 H20A MER sing 258 n n C20 H20B MER sing 259 n n C21 H21 MER sing 260 n n C21 H21A MER sing 261 n n N23 C22 MER sing 262 n n O24 C22 MER doub 263 n n C25 N23 MER sing 264 n n N23 C26 MER sing 265 n n C25 H25 MER sing 266 n n C25 H25A MER sing 267 n n C25 H25B MER sing 268 n n C26 H26 MER sing 269 n n C26 H26A MER sing 270 n n C26 H26B MER sing 271 n n # _atom_sites.entry_id 6KGS _atom_sites.fract_transf_matrix[1][1] 0.010334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004083 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MER A 1 701 1 MER MER . C 3 CO A 1 702 1 CO CO . D 3 CO A 1 703 2 CO CO . E 4 HOH A 1 801 163 HOH HOH . E 4 HOH A 2 802 20 HOH HOH . E 4 HOH A 3 803 47 HOH HOH . E 4 HOH A 4 804 154 HOH HOH . E 4 HOH A 5 805 95 HOH HOH . E 4 HOH A 6 806 137 HOH HOH . E 4 HOH A 7 807 27 HOH HOH . E 4 HOH A 8 808 99 HOH HOH . E 4 HOH A 9 809 62 HOH HOH . E 4 HOH A 10 810 126 HOH HOH . E 4 HOH A 11 811 206 HOH HOH . E 4 HOH A 12 812 29 HOH HOH . E 4 HOH A 13 813 10 HOH HOH . E 4 HOH A 14 814 213 HOH HOH . E 4 HOH A 15 815 36 HOH HOH . E 4 HOH A 16 816 6 HOH HOH . E 4 HOH A 17 817 38 HOH HOH . E 4 HOH A 18 818 49 HOH HOH . E 4 HOH A 19 819 230 HOH HOH . E 4 HOH A 20 820 103 HOH HOH . E 4 HOH A 21 821 73 HOH HOH . E 4 HOH A 22 822 83 HOH HOH . E 4 HOH A 23 823 25 HOH HOH . E 4 HOH A 24 824 43 HOH HOH . E 4 HOH A 25 825 107 HOH HOH . E 4 HOH A 26 826 85 HOH HOH . E 4 HOH A 27 827 216 HOH HOH . E 4 HOH A 28 828 104 HOH HOH . E 4 HOH A 29 829 16 HOH HOH . E 4 HOH A 30 830 75 HOH HOH . E 4 HOH A 31 831 9 HOH HOH . E 4 HOH A 32 832 217 HOH HOH . E 4 HOH A 33 833 148 HOH HOH . E 4 HOH A 34 834 76 HOH HOH . E 4 HOH A 35 835 68 HOH HOH . E 4 HOH A 36 836 8 HOH HOH . E 4 HOH A 37 837 40 HOH HOH . E 4 HOH A 38 838 69 HOH HOH . E 4 HOH A 39 839 79 HOH HOH . E 4 HOH A 40 840 30 HOH HOH . E 4 HOH A 41 841 211 HOH HOH . E 4 HOH A 42 842 21 HOH HOH . E 4 HOH A 43 843 33 HOH HOH . E 4 HOH A 44 844 214 HOH HOH . E 4 HOH A 45 845 78 HOH HOH . E 4 HOH A 46 846 60 HOH HOH . E 4 HOH A 47 847 70 HOH HOH . E 4 HOH A 48 848 160 HOH HOH . E 4 HOH A 49 849 143 HOH HOH . E 4 HOH A 50 850 93 HOH HOH . E 4 HOH A 51 851 74 HOH HOH . E 4 HOH A 52 852 225 HOH HOH . E 4 HOH A 53 853 190 HOH HOH . E 4 HOH A 54 854 80 HOH HOH . E 4 HOH A 55 855 169 HOH HOH . E 4 HOH A 56 856 102 HOH HOH . E 4 HOH A 57 857 39 HOH HOH . E 4 HOH A 58 858 82 HOH HOH . E 4 HOH A 59 859 13 HOH HOH . E 4 HOH A 60 860 37 HOH HOH . E 4 HOH A 61 861 215 HOH HOH . E 4 HOH A 62 862 87 HOH HOH . E 4 HOH A 63 863 112 HOH HOH . E 4 HOH A 64 864 5 HOH HOH . E 4 HOH A 65 865 51 HOH HOH . E 4 HOH A 66 866 167 HOH HOH . E 4 HOH A 67 867 17 HOH HOH . E 4 HOH A 68 868 22 HOH HOH . E 4 HOH A 69 869 96 HOH HOH . E 4 HOH A 70 870 228 HOH HOH . E 4 HOH A 71 871 146 HOH HOH . E 4 HOH A 72 872 128 HOH HOH . E 4 HOH A 73 873 97 HOH HOH . E 4 HOH A 74 874 3 HOH HOH . E 4 HOH A 75 875 155 HOH HOH . E 4 HOH A 76 876 11 HOH HOH . E 4 HOH A 77 877 131 HOH HOH . E 4 HOH A 78 878 54 HOH HOH . E 4 HOH A 79 879 117 HOH HOH . E 4 HOH A 80 880 229 HOH HOH . E 4 HOH A 81 881 113 HOH HOH . E 4 HOH A 82 882 18 HOH HOH . E 4 HOH A 83 883 182 HOH HOH . E 4 HOH A 84 884 186 HOH HOH . E 4 HOH A 85 885 52 HOH HOH . E 4 HOH A 86 886 94 HOH HOH . E 4 HOH A 87 887 165 HOH HOH . E 4 HOH A 88 888 133 HOH HOH . E 4 HOH A 89 889 72 HOH HOH . E 4 HOH A 90 890 119 HOH HOH . E 4 HOH A 91 891 88 HOH HOH . E 4 HOH A 92 892 168 HOH HOH . E 4 HOH A 93 893 56 HOH HOH . E 4 HOH A 94 894 24 HOH HOH . E 4 HOH A 95 895 132 HOH HOH . E 4 HOH A 96 896 227 HOH HOH . E 4 HOH A 97 897 7 HOH HOH . E 4 HOH A 98 898 71 HOH HOH . E 4 HOH A 99 899 34 HOH HOH . E 4 HOH A 100 900 159 HOH HOH . E 4 HOH A 101 901 110 HOH HOH . E 4 HOH A 102 902 26 HOH HOH . E 4 HOH A 103 903 120 HOH HOH . E 4 HOH A 104 904 220 HOH HOH . E 4 HOH A 105 905 55 HOH HOH . E 4 HOH A 106 906 98 HOH HOH . E 4 HOH A 107 907 91 HOH HOH . E 4 HOH A 108 908 180 HOH HOH . E 4 HOH A 109 909 31 HOH HOH . E 4 HOH A 110 910 129 HOH HOH . E 4 HOH A 111 911 115 HOH HOH . E 4 HOH A 112 912 61 HOH HOH . E 4 HOH A 113 913 105 HOH HOH . E 4 HOH A 114 914 183 HOH HOH . E 4 HOH A 115 915 84 HOH HOH . E 4 HOH A 116 916 65 HOH HOH . E 4 HOH A 117 917 32 HOH HOH . E 4 HOH A 118 918 100 HOH HOH . E 4 HOH A 119 919 124 HOH HOH . E 4 HOH A 120 920 66 HOH HOH . E 4 HOH A 121 921 108 HOH HOH . E 4 HOH A 122 922 58 HOH HOH . E 4 HOH A 123 923 118 HOH HOH . E 4 HOH A 124 924 59 HOH HOH . E 4 HOH A 125 925 44 HOH HOH . E 4 HOH A 126 926 63 HOH HOH . E 4 HOH A 127 927 12 HOH HOH . E 4 HOH A 128 928 231 HOH HOH . E 4 HOH A 129 929 15 HOH HOH . E 4 HOH A 130 930 116 HOH HOH . E 4 HOH A 131 931 23 HOH HOH . E 4 HOH A 132 932 45 HOH HOH . E 4 HOH A 133 933 198 HOH HOH . E 4 HOH A 134 934 196 HOH HOH . E 4 HOH A 135 935 41 HOH HOH . E 4 HOH A 136 936 145 HOH HOH . E 4 HOH A 137 937 200 HOH HOH . E 4 HOH A 138 938 201 HOH HOH . E 4 HOH A 139 939 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MER . . . B 2 25.216 1.391 -5.459 1 41.3 ? C1 MER 701 A 1 HETATM 2 C C2 MER . . . B 2 27.323 0.705 -8.545 1 49.48 ? C2 MER 701 A 1 HETATM 3 C C3 MER . . . B 2 24.693 1.488 -6.891 1 38.29 ? C3 MER 701 A 1 HETATM 4 C C4 MER . . . B 2 25.165 0.286 -7.731 1 45.1 ? C4 MER 701 A 1 HETATM 5 C C5 MER . . . B 2 27.426 -0.057 -7.467 1 48.98 ? C5 MER 701 A 1 HETATM 6 O O6 MER . . . B 2 26.015 2.182 -4.978 1 42.83 ? O6 MER 701 A 1 HETATM 7 C C7 MER . . . B 2 23.152 1.606 -6.866 1 43.35 ? C7 MER 701 A 1 HETATM 8 O O8 MER . . . B 2 22.618 1.815 -8.181 1 46.87 ? O8 MER 701 A 1 HETATM 9 C C9 MER . . . B 2 22.638 2.757 -6.003 1 41.6 ? C9 MER 701 A 1 HETATM 10 N N10 MER . . . B 2 26.19 -0.484 -6.994 1 43.43 ? N10 MER 701 A 1 HETATM 11 C C11 MER . . . B 2 28.688 -0.413 -6.79 1 46.02 ? C11 MER 701 A 1 HETATM 12 O O12 MER . . . B 2 28.628 -0.724 -5.513 1 45.83 ? O12 MER 701 A 1 HETATM 13 O O13 MER . . . B 2 29.8 -0.43 -7.303 1 51.6 ? O13 MER 701 A 1 HETATM 14 S S14 MER . . . B 2 28.568 1.592 -9.238 1 69.65 ? S14 MER 701 A 1 HETATM 15 C C15 MER . . . B 2 29.547 0.567 -10.317 1 61.64 ? C15 MER 701 A 1 HETATM 16 C C16 MER . . . B 2 29.45 1.069 -11.747 1 66.19 ? C16 MER 701 A 1 HETATM 17 C C17 MER . . . B 2 30.848 1.51 -12.176 1 70.84 ? C17 MER 701 A 1 HETATM 18 C C18 MER . . . B 2 25.91 0.672 -9.017 1 50.45 ? C18 MER 701 A 1 HETATM 19 N N19 MER . . . B 2 31.629 1.659 -10.931 1 70.22 ? N19 MER 701 A 1 HETATM 20 C C20 MER . . . B 2 25.519 2.019 -9.593 1 51.83 ? C20 MER 701 A 1 HETATM 21 C C21 MER . . . B 2 31.043 0.66 -10.003 1 73.88 ? C21 MER 701 A 1 HETATM 22 C C22 MER . . . B 2 30.723 2.753 -13.017 1 68.96 ? C22 MER 701 A 1 HETATM 23 N N23 MER . . . B 2 31.318 3.92 -12.684 1 65.8 ? N23 MER 701 A 1 HETATM 24 O O24 MER . . . B 2 30.071 2.62 -14.036 1 67.42 ? O24 MER 701 A 1 HETATM 25 C C25 MER . . . B 2 32.767 4.082 -12.694 1 67.79 ? C25 MER 701 A 1 HETATM 26 C C26 MER . . . B 2 30.567 5.123 -12.376 1 48.89 ? C26 MER 701 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 44 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #