data_6KGT
#
_model_server_result.job_id            q0mLZnzmBFSag7akhmax6Q 
_model_server_result.datetime_utc      '2024-11-22 09:32:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kgt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":701}' 
#
_entry.id    6KGT 
#
_exptl.entry_id    6KGT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              303.331 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-5-[(2R)-oxolan-2-yl]-2,3-dihydro-1,3-thiazole-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.39 
_cell.angle_gamma         90 
_cell.entry_id            6KGT 
_cell.length_a            97.035 
_cell.length_b            84.857 
_cell.length_c            90.868 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KGT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 486 A CYS 603 1_555 A SG CYS 488 A CYS 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
covale ? covale1 A OG SER 269 A SER 386 1_555 B C7 SFR . A SFR 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.251 ? 
metalc ? metalc1 A NE2 HIS 146 A HIS 263 1_555 E CO CO . A CO 704 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc2 A NE2 HIS 185 A HIS 302 1_555 E CO CO . A CO 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc3 A NE2 HIS 528 A HIS 645 1_555 D CO CO . A CO 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc4 A NE2 HIS 535 A HIS 652 1_555 C CO CO . A CO 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc5 A NE2 HIS 535 A HIS 652 1_555 C CO CO . A CO 702 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc6 C CO CO . A CO 702 1_555 F O HOH . A HOH 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc7 C CO CO . A CO 702 1_555 F O HOH . A HOH 900 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? 
metalc ? metalc8 C CO CO . A CO 702 1_555 F O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? 
metalc ? metalc9 C CO CO . A CO 702 1_555 F O HOH . A HOH 902 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc10 D CO CO . A CO 703 1_555 F O HOH . A HOH 822 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc11 D CO CO . A CO 703 1_555 F O HOH . A HOH 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc12 D CO CO . A CO 703 1_555 F O HOH . A HOH 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc13 E CO CO . A CO 704 1_555 F O HOH . A HOH 814 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc14 E CO CO . A CO 704 1_555 F O HOH . A HOH 852 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? 
metalc ? metalc15 E CO CO . A CO 704 1_555 F O HOH . A HOH 905 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
#
_chem_comp.formula           'C12 H17 N O6 S' 
_chem_comp.formula_weight    303.331 
_chem_comp.id                SFR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-5-[(2R)-oxolan-2-yl]-2,3-dihydro-1,3-thiazole-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'FAROPENEM, unbound, hydrolyzed form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O62 C61 SFR sing 290 n n 
C62 C61 SFR sing 291 n n 
C61 C6 SFR sing 292 n n 
S1 C2 SFR sing 293 n n 
S1 C5 SFR sing 294 n n 
C15 C14 SFR sing 295 n n 
C15 C16 SFR sing 296 n n 
C14 C2 SFR sing 297 n n 
C14 O18 SFR sing 298 n n 
C2 C3 SFR doub 299 n n 
C6 C5 SFR sing 300 n n 
C6 C7 SFR sing 301 n n 
C16 C17 SFR sing 302 n n 
C5 N4 SFR sing 303 n n 
C17 O18 SFR sing 304 n n 
C3 N4 SFR sing 305 n n 
C3 C31 SFR sing 306 n n 
C7 O71 SFR doub 307 n n 
C7 O72 SFR sing 308 n n 
O32 C31 SFR doub 309 n n 
C31 O31 SFR sing 310 n n 
O72 H1 SFR sing 311 n n 
C6 H2 SFR sing 312 n n 
N4 H3 SFR sing 313 n n 
C5 H5 SFR sing 314 n n 
C61 H8 SFR sing 315 n n 
O62 H9 SFR sing 316 n n 
C62 H10 SFR sing 317 n n 
C62 H11 SFR sing 318 n n 
C62 H12 SFR sing 319 n n 
C14 H13 SFR sing 320 n n 
C15 H14 SFR sing 321 n n 
C15 H15 SFR sing 322 n n 
C16 H16 SFR sing 323 n n 
C16 H17 SFR sing 324 n n 
C17 H18 SFR sing 325 n n 
C17 H19 SFR sing 326 n n 
O31 H20 SFR sing 327 n n 
#
_atom_sites.entry_id                     6KGT 
_atom_sites.fract_transf_matrix[1][1]    0.010306 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004036 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011785 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011819 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SFR A 1 701 1 SFR SFR . 
C 3 CO A 1 702 1 CO CO . 
D 3 CO A 1 703 2 CO CO . 
E 3 CO A 1 704 3 CO CO . 
F 4 HOH A 1 801 60 HOH HOH . 
F 4 HOH A 2 802 26 HOH HOH . 
F 4 HOH A 3 803 58 HOH HOH . 
F 4 HOH A 4 804 34 HOH HOH . 
F 4 HOH A 5 805 133 HOH HOH . 
F 4 HOH A 6 806 44 HOH HOH . 
F 4 HOH A 7 807 31 HOH HOH . 
F 4 HOH A 8 808 54 HOH HOH . 
F 4 HOH A 9 809 15 HOH HOH . 
F 4 HOH A 10 810 50 HOH HOH . 
F 4 HOH A 11 811 96 HOH HOH . 
F 4 HOH A 12 812 51 HOH HOH . 
F 4 HOH A 13 813 8 HOH HOH . 
F 4 HOH A 14 814 175 HOH HOH . 
F 4 HOH A 15 815 172 HOH HOH . 
F 4 HOH A 16 816 17 HOH HOH . 
F 4 HOH A 17 817 66 HOH HOH . 
F 4 HOH A 18 818 46 HOH HOH . 
F 4 HOH A 19 819 81 HOH HOH . 
F 4 HOH A 20 820 177 HOH HOH . 
F 4 HOH A 21 821 176 HOH HOH . 
F 4 HOH A 22 822 182 HOH HOH . 
F 4 HOH A 23 823 36 HOH HOH . 
F 4 HOH A 24 824 49 HOH HOH . 
F 4 HOH A 25 825 11 HOH HOH . 
F 4 HOH A 26 826 122 HOH HOH . 
F 4 HOH A 27 827 80 HOH HOH . 
F 4 HOH A 28 828 33 HOH HOH . 
F 4 HOH A 29 829 21 HOH HOH . 
F 4 HOH A 30 830 92 HOH HOH . 
F 4 HOH A 31 831 2 HOH HOH . 
F 4 HOH A 32 832 85 HOH HOH . 
F 4 HOH A 33 833 110 HOH HOH . 
F 4 HOH A 34 834 39 HOH HOH . 
F 4 HOH A 35 835 5 HOH HOH . 
F 4 HOH A 36 836 183 HOH HOH . 
F 4 HOH A 37 837 20 HOH HOH . 
F 4 HOH A 38 838 59 HOH HOH . 
F 4 HOH A 39 839 171 HOH HOH . 
F 4 HOH A 40 840 127 HOH HOH . 
F 4 HOH A 41 841 136 HOH HOH . 
F 4 HOH A 42 842 65 HOH HOH . 
F 4 HOH A 43 843 6 HOH HOH . 
F 4 HOH A 44 844 3 HOH HOH . 
F 4 HOH A 45 845 52 HOH HOH . 
F 4 HOH A 46 846 79 HOH HOH . 
F 4 HOH A 47 847 35 HOH HOH . 
F 4 HOH A 48 848 56 HOH HOH . 
F 4 HOH A 49 849 138 HOH HOH . 
F 4 HOH A 50 850 32 HOH HOH . 
F 4 HOH A 51 851 13 HOH HOH . 
F 4 HOH A 52 852 184 HOH HOH . 
F 4 HOH A 53 853 173 HOH HOH . 
F 4 HOH A 54 854 105 HOH HOH . 
F 4 HOH A 55 855 75 HOH HOH . 
F 4 HOH A 56 856 68 HOH HOH . 
F 4 HOH A 57 857 30 HOH HOH . 
F 4 HOH A 58 858 88 HOH HOH . 
F 4 HOH A 59 859 12 HOH HOH . 
F 4 HOH A 60 860 29 HOH HOH . 
F 4 HOH A 61 861 113 HOH HOH . 
F 4 HOH A 62 862 27 HOH HOH . 
F 4 HOH A 63 863 181 HOH HOH . 
F 4 HOH A 64 864 179 HOH HOH . 
F 4 HOH A 65 865 78 HOH HOH . 
F 4 HOH A 66 866 14 HOH HOH . 
F 4 HOH A 67 867 64 HOH HOH . 
F 4 HOH A 68 868 107 HOH HOH . 
F 4 HOH A 69 869 117 HOH HOH . 
F 4 HOH A 70 870 18 HOH HOH . 
F 4 HOH A 71 871 63 HOH HOH . 
F 4 HOH A 72 872 180 HOH HOH . 
F 4 HOH A 73 873 178 HOH HOH . 
F 4 HOH A 74 874 103 HOH HOH . 
F 4 HOH A 75 875 45 HOH HOH . 
F 4 HOH A 76 876 72 HOH HOH . 
F 4 HOH A 77 877 1 HOH HOH . 
F 4 HOH A 78 878 120 HOH HOH . 
F 4 HOH A 79 879 131 HOH HOH . 
F 4 HOH A 80 880 108 HOH HOH . 
F 4 HOH A 81 881 83 HOH HOH . 
F 4 HOH A 82 882 67 HOH HOH . 
F 4 HOH A 83 883 95 HOH HOH . 
F 4 HOH A 84 884 48 HOH HOH . 
F 4 HOH A 85 885 140 HOH HOH . 
F 4 HOH A 86 886 126 HOH HOH . 
F 4 HOH A 87 887 19 HOH HOH . 
F 4 HOH A 88 888 186 HOH HOH . 
F 4 HOH A 89 889 73 HOH HOH . 
F 4 HOH A 90 890 70 HOH HOH . 
F 4 HOH A 91 891 98 HOH HOH . 
F 4 HOH A 92 892 101 HOH HOH . 
F 4 HOH A 93 893 16 HOH HOH . 
F 4 HOH A 94 894 125 HOH HOH . 
F 4 HOH A 95 895 134 HOH HOH . 
F 4 HOH A 96 896 123 HOH HOH . 
F 4 HOH A 97 897 4 HOH HOH . 
F 4 HOH A 98 898 132 HOH HOH . 
F 4 HOH A 99 899 77 HOH HOH . 
F 4 HOH A 100 900 165 HOH HOH . 
F 4 HOH A 101 901 69 HOH HOH . 
F 4 HOH A 102 902 166 HOH HOH . 
F 4 HOH A 103 903 22 HOH HOH . 
F 4 HOH A 104 904 23 HOH HOH . 
F 4 HOH A 105 905 185 HOH HOH . 
F 4 HOH A 106 906 87 HOH HOH . 
F 4 HOH A 107 907 100 HOH HOH . 
F 4 HOH A 108 908 135 HOH HOH . 
F 4 HOH A 109 909 151 HOH HOH . 
F 4 HOH A 110 910 111 HOH HOH . 
F 4 HOH A 111 911 43 HOH HOH . 
F 4 HOH A 112 912 124 HOH HOH . 
F 4 HOH A 113 913 42 HOH HOH . 
F 4 HOH A 114 914 187 HOH HOH . 
F 4 HOH A 115 915 161 HOH HOH . 
F 4 HOH A 116 916 160 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 SFR . . . B 2 25.238 1.42 -5.319 1 51.68 ? C7 SFR 701 A 1 
HETATM 2 C C6 SFR . . . B 2 25.071 1.34 -6.864 1 51.4 ? C6 SFR 701 A 1 
HETATM 3 N N4 SFR . . . B 2 27.12 0.067 -6.446 1 58.43 ? N4 SFR 701 A 1 
HETATM 4 C C5 SFR . . . B 2 25.745 0.146 -7.281 1 54.76 ? C5 SFR 701 A 1 
HETATM 5 C C3 SFR . . . B 2 28.263 0.258 -7.436 1 63.33 ? C3 SFR 701 A 1 
HETATM 6 C C2 SFR . . . B 2 27.77 0.438 -8.904 1 68.94 ? C2 SFR 701 A 1 
HETATM 7 S S1 SFR . . . B 2 26.256 0.325 -8.927 1 68.97 ? S1 SFR 701 A 1 
HETATM 8 C C31 SFR . . . B 2 29.682 0.131 -6.893 1 66.5 ? C31 SFR 701 A 1 
HETATM 9 O O71 SFR . . . B 2 25.898 2.382 -4.848 1 54 ? O71 SFR 701 A 1 
HETATM 10 C C61 SFR . . . B 2 23.563 1.322 -7.255 1 54.1 ? C61 SFR 701 A 1 
HETATM 11 O O62 SFR . . . B 2 23.449 1.362 -8.641 1 62.93 ? O62 SFR 701 A 1 
HETATM 12 C C62 SFR . . . B 2 22.801 2.496 -6.661 1 43.62 ? C62 SFR 701 A 1 
HETATM 13 C C14 SFR . . . B 2 28.43 -0.023 -10.206 1 83.22 ? C14 SFR 701 A 1 
HETATM 14 C C15 SFR . . . B 2 29.108 0.921 -10.826 1 83.84 ? C15 SFR 701 A 1 
HETATM 15 C C16 SFR . . . B 2 29.668 0.103 -12.107 1 85.4 ? C16 SFR 701 A 1 
HETATM 16 C C17 SFR . . . B 2 29.978 -1.15 -11.651 1 84.37 ? C17 SFR 701 A 1 
HETATM 17 O O18 SFR . . . B 2 29.46 -1.236 -10.208 1 78.27 ? O18 SFR 701 A 1 
HETATM 18 O O32 SFR . . . B 2 30.65 0.822 -7.313 1 76.9 ? O32 SFR 701 A 1 
HETATM 19 O O31 SFR . . . B 2 29.862 -0.689 -5.962 1 60.93 ? O31 SFR 701 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           238 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           19 
#