data_6KGV
#
_model_server_result.job_id            94MjJOddamipDbdLasO3qA 
_model_server_result.datetime_utc      '2024-11-22 07:29:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kgv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":703}' 
#
_entry.id    6KGV 
#
_exptl.entry_id    6KGV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.933 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COBALT (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.71 
_cell.angle_gamma         90 
_cell.entry_id            6KGV 
_cell.length_a            96.63 
_cell.length_b            83.8 
_cell.length_c            90.13 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KGV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 486 A CYS 603 1_555 A SG CYS 488 A CYS 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
covale ? covale1 A OG SER 269 A SER 386 1_555 F C1 AXL . A AXL 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
metalc ? metalc1 A NE2 HIS 146 A HIS 263 1_555 C CO CO . A CO 702 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc2 A NE2 HIS 185 A HIS 302 1_555 C CO CO . A CO 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc3 A CE1 HIS 305 A HIS 422 1_555 D CO CO . A CO 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc4 A NE2 HIS 305 A HIS 422 1_555 D CO CO . A CO 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc5 A CD GLU 309 A GLU 426 1_555 D CO CO . A CO 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc6 A OE1 GLU 309 A GLU 426 1_555 D CO CO . A CO 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc7 A OE2 GLU 309 A GLU 426 1_555 D CO CO . A CO 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc8 A NE2 HIS 528 A HIS 645 1_555 E CO CO . A CO 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc9 A NE2 HIS 535 A HIS 652 1_555 B CO CO . A CO 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc10 A NE2 HIS 535 A HIS 652 1_555 B CO CO . A CO 701 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc11 B CO CO . A CO 701 1_555 G O HOH . A HOH 873 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? 
metalc ? metalc12 B CO CO . A CO 701 1_555 G O HOH . A HOH 873 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc13 B CO CO . A CO 701 1_555 G O HOH . A HOH 954 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc14 C CO CO . A CO 702 1_555 G O HOH . A HOH 818 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc15 C CO CO . A CO 702 1_555 G O HOH . A HOH 821 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc16 C CO CO . A CO 702 1_555 G O HOH . A HOH 897 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.71 ? 
metalc ? metalc17 C CO CO . A CO 702 1_555 G O HOH . A HOH 952 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc18 D CO CO . A CO 703 1_555 G O HOH . A HOH 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc19 E CO CO . A CO 704 1_555 G O HOH . A HOH 861 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc20 E CO CO . A CO 704 1_555 G O HOH . A HOH 963 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
#
_chem_comp.formula           'Co 2' 
_chem_comp.formula_weight    58.933 
_chem_comp.id                CO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COBALT (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6KGV 
_atom_sites.fract_transf_matrix[1][1]    0.010349 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00412 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011933 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011942 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CO A 1 701 1 CO CO . 
C 2 CO A 1 702 4 CO CO . 
D 2 CO A 1 703 5 CO CO . 
E 2 CO A 1 704 6 CO CO . 
F 3 AXL A 1 705 1 AXL AXL . 
G 4 HOH A 1 801 89 HOH HOH . 
G 4 HOH A 2 802 208 HOH HOH . 
G 4 HOH A 3 803 170 HOH HOH . 
G 4 HOH A 4 804 216 HOH HOH . 
G 4 HOH A 5 805 17 HOH HOH . 
G 4 HOH A 6 806 84 HOH HOH . 
G 4 HOH A 7 807 232 HOH HOH . 
G 4 HOH A 8 808 158 HOH HOH . 
G 4 HOH A 9 809 39 HOH HOH . 
G 4 HOH A 10 810 119 HOH HOH . 
G 4 HOH A 11 811 75 HOH HOH . 
G 4 HOH A 12 812 160 HOH HOH . 
G 4 HOH A 13 813 144 HOH HOH . 
G 4 HOH A 14 814 112 HOH HOH . 
G 4 HOH A 15 815 104 HOH HOH . 
G 4 HOH A 16 816 174 HOH HOH . 
G 4 HOH A 17 817 182 HOH HOH . 
G 4 HOH A 18 818 275 HOH HOH . 
G 4 HOH A 19 819 147 HOH HOH . 
G 4 HOH A 20 820 199 HOH HOH . 
G 4 HOH A 21 821 95 HOH HOH . 
G 4 HOH A 22 822 151 HOH HOH . 
G 4 HOH A 23 823 108 HOH HOH . 
G 4 HOH A 24 824 118 HOH HOH . 
G 4 HOH A 25 825 106 HOH HOH . 
G 4 HOH A 26 826 101 HOH HOH . 
G 4 HOH A 27 827 21 HOH HOH . 
G 4 HOH A 28 828 114 HOH HOH . 
G 4 HOH A 29 829 282 HOH HOH . 
G 4 HOH A 30 830 225 HOH HOH . 
G 4 HOH A 31 831 164 HOH HOH . 
G 4 HOH A 32 832 69 HOH HOH . 
G 4 HOH A 33 833 4 HOH HOH . 
G 4 HOH A 34 834 81 HOH HOH . 
G 4 HOH A 35 835 138 HOH HOH . 
G 4 HOH A 36 836 98 HOH HOH . 
G 4 HOH A 37 837 20 HOH HOH . 
G 4 HOH A 38 838 188 HOH HOH . 
G 4 HOH A 39 839 206 HOH HOH . 
G 4 HOH A 40 840 120 HOH HOH . 
G 4 HOH A 41 841 46 HOH HOH . 
G 4 HOH A 42 842 19 HOH HOH . 
G 4 HOH A 43 843 59 HOH HOH . 
G 4 HOH A 44 844 7 HOH HOH . 
G 4 HOH A 45 845 51 HOH HOH . 
G 4 HOH A 46 846 105 HOH HOH . 
G 4 HOH A 47 847 47 HOH HOH . 
G 4 HOH A 48 848 127 HOH HOH . 
G 4 HOH A 49 849 97 HOH HOH . 
G 4 HOH A 50 850 57 HOH HOH . 
G 4 HOH A 51 851 139 HOH HOH . 
G 4 HOH A 52 852 152 HOH HOH . 
G 4 HOH A 53 853 22 HOH HOH . 
G 4 HOH A 54 854 203 HOH HOH . 
G 4 HOH A 55 855 2 HOH HOH . 
G 4 HOH A 56 856 99 HOH HOH . 
G 4 HOH A 57 857 52 HOH HOH . 
G 4 HOH A 58 858 145 HOH HOH . 
G 4 HOH A 59 859 53 HOH HOH . 
G 4 HOH A 60 860 15 HOH HOH . 
G 4 HOH A 61 861 280 HOH HOH . 
G 4 HOH A 62 862 13 HOH HOH . 
G 4 HOH A 63 863 44 HOH HOH . 
G 4 HOH A 64 864 49 HOH HOH . 
G 4 HOH A 65 865 179 HOH HOH . 
G 4 HOH A 66 866 18 HOH HOH . 
G 4 HOH A 67 867 107 HOH HOH . 
G 4 HOH A 68 868 1 HOH HOH . 
G 4 HOH A 69 869 260 HOH HOH . 
G 4 HOH A 70 870 3 HOH HOH . 
G 4 HOH A 71 871 35 HOH HOH . 
G 4 HOH A 72 872 6 HOH HOH . 
G 4 HOH A 73 873 278 HOH HOH . 
G 4 HOH A 74 874 214 HOH HOH . 
G 4 HOH A 75 875 230 HOH HOH . 
G 4 HOH A 76 876 100 HOH HOH . 
G 4 HOH A 77 877 26 HOH HOH . 
G 4 HOH A 78 878 163 HOH HOH . 
G 4 HOH A 79 879 259 HOH HOH . 
G 4 HOH A 80 880 148 HOH HOH . 
G 4 HOH A 81 881 37 HOH HOH . 
G 4 HOH A 82 882 198 HOH HOH . 
G 4 HOH A 83 883 16 HOH HOH . 
G 4 HOH A 84 884 30 HOH HOH . 
G 4 HOH A 85 885 34 HOH HOH . 
G 4 HOH A 86 886 111 HOH HOH . 
G 4 HOH A 87 887 66 HOH HOH . 
G 4 HOH A 88 888 146 HOH HOH . 
G 4 HOH A 89 889 25 HOH HOH . 
G 4 HOH A 90 890 9 HOH HOH . 
G 4 HOH A 91 891 73 HOH HOH . 
G 4 HOH A 92 892 56 HOH HOH . 
G 4 HOH A 93 893 87 HOH HOH . 
G 4 HOH A 94 894 48 HOH HOH . 
G 4 HOH A 95 895 28 HOH HOH . 
G 4 HOH A 96 896 221 HOH HOH . 
G 4 HOH A 97 897 277 HOH HOH . 
G 4 HOH A 98 898 125 HOH HOH . 
G 4 HOH A 99 899 96 HOH HOH . 
G 4 HOH A 100 900 85 HOH HOH . 
G 4 HOH A 101 901 103 HOH HOH . 
G 4 HOH A 102 902 176 HOH HOH . 
G 4 HOH A 103 903 196 HOH HOH . 
G 4 HOH A 104 904 110 HOH HOH . 
G 4 HOH A 105 905 29 HOH HOH . 
G 4 HOH A 106 906 272 HOH HOH . 
G 4 HOH A 107 907 121 HOH HOH . 
G 4 HOH A 108 908 136 HOH HOH . 
G 4 HOH A 109 909 102 HOH HOH . 
G 4 HOH A 110 910 161 HOH HOH . 
G 4 HOH A 111 911 78 HOH HOH . 
G 4 HOH A 112 912 141 HOH HOH . 
G 4 HOH A 113 913 40 HOH HOH . 
G 4 HOH A 114 914 281 HOH HOH . 
G 4 HOH A 115 915 8 HOH HOH . 
G 4 HOH A 116 916 70 HOH HOH . 
G 4 HOH A 117 917 83 HOH HOH . 
G 4 HOH A 118 918 32 HOH HOH . 
G 4 HOH A 119 919 180 HOH HOH . 
G 4 HOH A 120 920 64 HOH HOH . 
G 4 HOH A 121 921 24 HOH HOH . 
G 4 HOH A 122 922 43 HOH HOH . 
G 4 HOH A 123 923 177 HOH HOH . 
G 4 HOH A 124 924 178 HOH HOH . 
G 4 HOH A 125 925 65 HOH HOH . 
G 4 HOH A 126 926 61 HOH HOH . 
G 4 HOH A 127 927 133 HOH HOH . 
G 4 HOH A 128 928 166 HOH HOH . 
G 4 HOH A 129 929 63 HOH HOH . 
G 4 HOH A 130 930 187 HOH HOH . 
G 4 HOH A 131 931 31 HOH HOH . 
G 4 HOH A 132 932 72 HOH HOH . 
G 4 HOH A 133 933 117 HOH HOH . 
G 4 HOH A 134 934 12 HOH HOH . 
G 4 HOH A 135 935 217 HOH HOH . 
G 4 HOH A 136 936 244 HOH HOH . 
G 4 HOH A 137 937 256 HOH HOH . 
G 4 HOH A 138 938 229 HOH HOH . 
G 4 HOH A 139 939 74 HOH HOH . 
G 4 HOH A 140 940 62 HOH HOH . 
G 4 HOH A 141 941 33 HOH HOH . 
G 4 HOH A 142 942 77 HOH HOH . 
G 4 HOH A 143 943 5 HOH HOH . 
G 4 HOH A 144 944 126 HOH HOH . 
G 4 HOH A 145 945 58 HOH HOH . 
G 4 HOH A 146 946 42 HOH HOH . 
G 4 HOH A 147 947 86 HOH HOH . 
G 4 HOH A 148 948 257 HOH HOH . 
G 4 HOH A 149 949 224 HOH HOH . 
G 4 HOH A 150 950 14 HOH HOH . 
G 4 HOH A 151 951 142 HOH HOH . 
G 4 HOH A 152 952 276 HOH HOH . 
G 4 HOH A 153 953 27 HOH HOH . 
G 4 HOH A 154 954 273 HOH HOH . 
G 4 HOH A 155 955 150 HOH HOH . 
G 4 HOH A 156 956 219 HOH HOH . 
G 4 HOH A 157 957 227 HOH HOH . 
G 4 HOH A 158 958 215 HOH HOH . 
G 4 HOH A 159 959 79 HOH HOH . 
G 4 HOH A 160 960 193 HOH HOH . 
G 4 HOH A 161 961 279 HOH HOH . 
G 4 HOH A 162 962 186 HOH HOH . 
G 4 HOH A 163 963 266 HOH HOH . 
G 4 HOH A 164 964 246 HOH HOH . 
G 4 HOH A 165 965 204 HOH HOH . 
G 4 HOH A 166 966 283 HOH HOH . 
G 4 HOH A 167 967 134 HOH HOH . 
G 4 HOH A 168 968 159 HOH HOH . 
G 4 HOH A 169 969 115 HOH HOH . 
G 4 HOH A 170 970 197 HOH HOH . 
G 4 HOH A 171 971 250 HOH HOH . 
G 4 HOH A 172 972 88 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CO 
_atom_site.label_atom_id         CO 
_atom_site.label_comp_id         CO 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               19.355 
_atom_site.Cartn_y               -1.317 
_atom_site.Cartn_z               -20.035 
_atom_site.occupancy             0.52 
_atom_site.B_iso_or_equiv        85.58 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CO 
_atom_site.auth_comp_id          CO 
_atom_site.auth_seq_id           703 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#