data_6KGW # _model_server_result.job_id cYWIxbltv3HL6fuYleLQww _model_server_result.datetime_utc '2024-11-02 06:22:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kgw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 6KGW # _exptl.entry_id 6KGW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.31 _cell.angle_gamma 90 _cell.entry_id 6KGW _cell.length_a 97.246 _cell.length_b 84.219 _cell.length_c 90.527 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KGW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 486 A CYS 603 1_555 A SG CYS 488 A CYS 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A OG SER 269 A SER 386 1_555 E C15 AIX . A AIX 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? metalc ? metalc1 A NE2 HIS 146 A HIS 263 1_555 D CO CO . A CO 703 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc2 A CE1 HIS 185 A HIS 302 1_555 D CO CO . A CO 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc3 A NE2 HIS 185 A HIS 302 1_555 D CO CO . A CO 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc4 A NE2 HIS 528 A HIS 645 1_555 C CO CO . A CO 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc5 A NE2 HIS 535 A HIS 652 1_555 B CO CO . A CO 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc6 A NE2 HIS 535 A HIS 652 1_555 B CO CO . A CO 701 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc7 B CO CO . A CO 701 1_555 F O HOH . A HOH 854 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? metalc ? metalc8 B CO CO . A CO 701 1_555 F O HOH . A HOH 854 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? metalc ? metalc9 B CO CO . A CO 701 1_555 F O HOH . A HOH 862 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc10 B CO CO . A CO 701 1_555 F O HOH . A HOH 862 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc11 C CO CO . A CO 702 1_555 F O HOH . A HOH 892 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc12 C CO CO . A CO 702 1_555 F O HOH . A HOH 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc13 C CO CO . A CO 702 1_555 F O HOH . A HOH 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc14 D CO CO . A CO 703 1_555 F O HOH . A HOH 818 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc15 D CO CO . A CO 703 1_555 F O HOH . A HOH 830 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc16 D CO CO . A CO 703 1_555 F O HOH . A HOH 896 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? # _chem_comp.formula 'C16 H21 N3 O4 S' _chem_comp.formula_weight 351.421 _chem_comp.id AIX _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'AMPICILLIN (open form)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 AIX doub 1 n y C8 C7 AIX sing 2 n y C8 H8 AIX sing 3 n n C7 C5 AIX doub 4 n y C11 C5 AIX sing 5 n y C5 C4 AIX sing 6 n n C1 C6 AIX sing 7 n n C16 C6 AIX sing 8 n n C6 C12 AIX sing 9 n n C6 S1 AIX sing 10 n n C14 N1 AIX sing 11 n n N1 C3 AIX sing 12 n n N1 HN1 AIX sing 13 n n O2 C2 AIX doub 14 n n O1 C2 AIX sing 15 n n C2 C12 AIX sing 16 n n C12 N3 AIX sing 17 n n N3 C13 AIX sing 18 n n N3 HN3 AIX sing 19 n n C3 C4 AIX sing 20 n n C4 N2 AIX sing 21 n n C4 H4 AIX sing 22 n n C1 H1 AIX sing 23 n n C1 H1A AIX sing 24 n n C1 H1B AIX sing 25 n n C3 O3 AIX doub 26 n n C7 H7 AIX sing 27 n n C9 C10 AIX sing 28 n y C9 H9 AIX sing 29 n n C10 C11 AIX doub 30 n y C10 H10 AIX sing 31 n n C11 H11 AIX sing 32 n n C12 H12 AIX sing 33 n n S1 C13 AIX sing 34 n n C13 C14 AIX sing 35 n n C13 H13 AIX sing 36 n n C15 C14 AIX sing 37 n n C14 H14 AIX sing 38 n n O4 C15 AIX doub 39 n n C15 H15 AIX sing 40 n n C16 H16 AIX sing 41 n n C16 H16A AIX sing 42 n n C16 H16B AIX sing 43 n n N2 HN2 AIX sing 44 n n N2 HN2A AIX sing 45 n n O1 HO1 AIX sing 46 n n # _atom_sites.entry_id 6KGW _atom_sites.fract_transf_matrix[1][1] 0.010283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004012 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 701 1 CO CO . C 2 CO A 1 702 2 CO CO . D 2 CO A 1 703 4 CO CO . E 3 AIX A 1 704 1 AIX AIX . F 4 HOH A 1 801 76 HOH HOH . F 4 HOH A 2 802 109 HOH HOH . F 4 HOH A 3 803 104 HOH HOH . F 4 HOH A 4 804 56 HOH HOH . F 4 HOH A 5 805 107 HOH HOH . F 4 HOH A 6 806 65 HOH HOH . F 4 HOH A 7 807 41 HOH HOH . F 4 HOH A 8 808 87 HOH HOH . F 4 HOH A 9 809 5 HOH HOH . F 4 HOH A 10 810 68 HOH HOH . F 4 HOH A 11 811 37 HOH HOH . F 4 HOH A 12 812 92 HOH HOH . F 4 HOH A 13 813 89 HOH HOH . F 4 HOH A 14 814 10 HOH HOH . F 4 HOH A 15 815 64 HOH HOH . F 4 HOH A 16 816 94 HOH HOH . F 4 HOH A 17 817 80 HOH HOH . F 4 HOH A 18 818 1 HOH HOH . F 4 HOH A 19 819 4 HOH HOH . F 4 HOH A 20 820 67 HOH HOH . F 4 HOH A 21 821 44 HOH HOH . F 4 HOH A 22 822 39 HOH HOH . F 4 HOH A 23 823 99 HOH HOH . F 4 HOH A 24 824 6 HOH HOH . F 4 HOH A 25 825 69 HOH HOH . F 4 HOH A 26 826 11 HOH HOH . F 4 HOH A 27 827 28 HOH HOH . F 4 HOH A 28 828 103 HOH HOH . F 4 HOH A 29 829 49 HOH HOH . F 4 HOH A 30 830 2 HOH HOH . F 4 HOH A 31 831 15 HOH HOH . F 4 HOH A 32 832 51 HOH HOH . F 4 HOH A 33 833 31 HOH HOH . F 4 HOH A 34 834 79 HOH HOH . F 4 HOH A 35 835 91 HOH HOH . F 4 HOH A 36 836 98 HOH HOH . F 4 HOH A 37 837 12 HOH HOH . F 4 HOH A 38 838 58 HOH HOH . F 4 HOH A 39 839 93 HOH HOH . F 4 HOH A 40 840 78 HOH HOH . F 4 HOH A 41 841 16 HOH HOH . F 4 HOH A 42 842 34 HOH HOH . F 4 HOH A 43 843 26 HOH HOH . F 4 HOH A 44 844 48 HOH HOH . F 4 HOH A 45 845 82 HOH HOH . F 4 HOH A 46 846 18 HOH HOH . F 4 HOH A 47 847 13 HOH HOH . F 4 HOH A 48 848 38 HOH HOH . F 4 HOH A 49 849 95 HOH HOH . F 4 HOH A 50 850 27 HOH HOH . F 4 HOH A 51 851 20 HOH HOH . F 4 HOH A 52 852 74 HOH HOH . F 4 HOH A 53 853 97 HOH HOH . F 4 HOH A 54 854 125 HOH HOH . F 4 HOH A 55 855 70 HOH HOH . F 4 HOH A 56 856 19 HOH HOH . F 4 HOH A 57 857 7 HOH HOH . F 4 HOH A 58 858 72 HOH HOH . F 4 HOH A 59 859 21 HOH HOH . F 4 HOH A 60 860 63 HOH HOH . F 4 HOH A 61 861 84 HOH HOH . F 4 HOH A 62 862 128 HOH HOH . F 4 HOH A 63 863 81 HOH HOH . F 4 HOH A 64 864 60 HOH HOH . F 4 HOH A 65 865 83 HOH HOH . F 4 HOH A 66 866 127 HOH HOH . F 4 HOH A 67 867 110 HOH HOH . F 4 HOH A 68 868 43 HOH HOH . F 4 HOH A 69 869 102 HOH HOH . F 4 HOH A 70 870 120 HOH HOH . F 4 HOH A 71 871 50 HOH HOH . F 4 HOH A 72 872 111 HOH HOH . F 4 HOH A 73 873 36 HOH HOH . F 4 HOH A 74 874 33 HOH HOH . F 4 HOH A 75 875 29 HOH HOH . F 4 HOH A 76 876 71 HOH HOH . F 4 HOH A 77 877 25 HOH HOH . F 4 HOH A 78 878 96 HOH HOH . F 4 HOH A 79 879 32 HOH HOH . F 4 HOH A 80 880 57 HOH HOH . F 4 HOH A 81 881 62 HOH HOH . F 4 HOH A 82 882 116 HOH HOH . F 4 HOH A 83 883 40 HOH HOH . F 4 HOH A 84 884 47 HOH HOH . F 4 HOH A 85 885 75 HOH HOH . F 4 HOH A 86 886 35 HOH HOH . F 4 HOH A 87 887 66 HOH HOH . F 4 HOH A 88 888 14 HOH HOH . F 4 HOH A 89 889 90 HOH HOH . F 4 HOH A 90 890 59 HOH HOH . F 4 HOH A 91 891 45 HOH HOH . F 4 HOH A 92 892 22 HOH HOH . F 4 HOH A 93 893 17 HOH HOH . F 4 HOH A 94 894 122 HOH HOH . F 4 HOH A 95 895 113 HOH HOH . F 4 HOH A 96 896 3 HOH HOH . F 4 HOH A 97 897 77 HOH HOH . F 4 HOH A 98 898 53 HOH HOH . F 4 HOH A 99 899 123 HOH HOH . F 4 HOH A 100 900 121 HOH HOH . F 4 HOH A 101 901 55 HOH HOH . F 4 HOH A 102 902 114 HOH HOH . F 4 HOH A 103 903 117 HOH HOH . F 4 HOH A 104 904 124 HOH HOH . F 4 HOH A 105 905 54 HOH HOH . F 4 HOH A 106 906 30 HOH HOH . F 4 HOH A 107 907 105 HOH HOH . F 4 HOH A 108 908 100 HOH HOH . F 4 HOH A 109 909 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 AIX . . . E 3 27.062 5.483 -10.912 1 65.66 ? C8 AIX 704 A 1 HETATM 2 C C5 AIX . . . E 3 25.055 4.527 -9.979 1 57.43 ? C5 AIX 704 A 1 HETATM 3 C C6 AIX . . . E 3 27.879 0.5 -8.526 1 48.87 ? C6 AIX 704 A 1 HETATM 4 N N1 AIX . . . E 3 24.684 2.623 -7.498 1 58.36 ? N1 AIX 704 A 1 HETATM 5 C C2 AIX . . . E 3 29.084 0.516 -6.246 1 51.79 ? C2 AIX 704 A 1 HETATM 6 N N3 AIX . . . E 3 26.672 0.194 -6.404 1 49.17 ? N3 AIX 704 A 1 HETATM 7 C C4 AIX . . . E 3 23.997 4.493 -8.89 1 56.01 ? C4 AIX 704 A 1 HETATM 8 C C1 AIX . . . E 3 28.501 -0.863 -8.828 1 43.54 ? C1 AIX 704 A 1 HETATM 9 C C3 AIX . . . E 3 23.76 3.066 -8.364 1 59.22 ? C3 AIX 704 A 1 HETATM 10 C C7 AIX . . . E 3 26.072 5.471 -9.942 1 64.05 ? C7 AIX 704 A 1 HETATM 11 C C9 AIX . . . E 3 27.048 4.553 -11.929 1 59.44 ? C9 AIX 704 A 1 HETATM 12 C C10 AIX . . . E 3 26.037 3.616 -11.981 1 57.62 ? C10 AIX 704 A 1 HETATM 13 C C11 AIX . . . E 3 25.044 3.606 -11.016 1 59.75 ? C11 AIX 704 A 1 HETATM 14 C C12 AIX . . . E 3 27.82 0.872 -7.013 1 50.21 ? C12 AIX 704 A 1 HETATM 15 C C13 AIX . . . E 3 25.513 0.22 -7.268 1 49.72 ? C13 AIX 704 A 1 HETATM 16 C C14 AIX . . . E 3 24.585 1.371 -6.748 1 51.42 ? C14 AIX 704 A 1 HETATM 17 C C15 AIX . . . E 3 24.945 1.529 -5.228 1 53.83 ? C15 AIX 704 A 1 HETATM 18 C C16 AIX . . . E 3 28.582 1.606 -9.311 1 45.51 ? C16 AIX 704 A 1 HETATM 19 N N2 AIX . . . E 3 22.75 5.144 -9.334 1 62.87 ? N2 AIX 704 A 1 HETATM 20 O O1 AIX . . . E 3 28.913 -0.556 -5.54 1 52.84 ? O1 AIX 704 A 1 HETATM 21 O O2 AIX . . . E 3 30.132 1.156 -6.288 1 57.77 ? O2 AIX 704 A 1 HETATM 22 O O3 AIX . . . E 3 22.78 2.413 -8.714 1 57.6 ? O3 AIX 704 A 1 HETATM 23 O O4 AIX . . . E 3 25.776 2.311 -4.851 1 53.59 ? O4 AIX 704 A 1 HETATM 24 S S1 AIX . . . E 3 26.098 0.469 -8.995 1 58.52 ? S1 AIX 704 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #