data_6KGW
#
_model_server_result.job_id            WUKa-nYscng98hvWkqBcTg 
_model_server_result.datetime_utc      '2024-11-27 07:10:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kgw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":704}' 
#
_entry.id    6KGW 
#
_exptl.entry_id    6KGW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.31 
_cell.angle_gamma         90 
_cell.entry_id            6KGW 
_cell.length_a            97.246 
_cell.length_b            84.219 
_cell.length_c            90.527 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KGW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 486 A CYS 603 1_555 A SG CYS 488 A CYS 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 A OG SER 269 A SER 386 1_555 E C15 AIX . A AIX 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? 
metalc ? metalc1 A NE2 HIS 146 A HIS 263 1_555 D CO CO . A CO 703 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc2 A CE1 HIS 185 A HIS 302 1_555 D CO CO . A CO 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? 
metalc ? metalc3 A NE2 HIS 185 A HIS 302 1_555 D CO CO . A CO 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc4 A NE2 HIS 528 A HIS 645 1_555 C CO CO . A CO 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc5 A NE2 HIS 535 A HIS 652 1_555 B CO CO . A CO 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc6 A NE2 HIS 535 A HIS 652 1_555 B CO CO . A CO 701 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc7 B CO CO . A CO 701 1_555 F O HOH . A HOH 854 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? 
metalc ? metalc8 B CO CO . A CO 701 1_555 F O HOH . A HOH 854 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? 
metalc ? metalc9 B CO CO . A CO 701 1_555 F O HOH . A HOH 862 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? 
metalc ? metalc10 B CO CO . A CO 701 1_555 F O HOH . A HOH 862 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? 
metalc ? metalc11 C CO CO . A CO 702 1_555 F O HOH . A HOH 892 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc12 C CO CO . A CO 702 1_555 F O HOH . A HOH 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
metalc ? metalc13 C CO CO . A CO 702 1_555 F O HOH . A HOH 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc14 D CO CO . A CO 703 1_555 F O HOH . A HOH 818 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc15 D CO CO . A CO 703 1_555 F O HOH . A HOH 830 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc16 D CO CO . A CO 703 1_555 F O HOH . A HOH 896 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
#
_chem_comp.formula           'C16 H21 N3 O4 S' 
_chem_comp.formula_weight    351.421 
_chem_comp.id                AIX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'AMPICILLIN (open form)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C8 AIX doub 1 n y 
C8 C7 AIX sing 2 n y 
C8 H8 AIX sing 3 n n 
C7 C5 AIX doub 4 n y 
C11 C5 AIX sing 5 n y 
C5 C4 AIX sing 6 n n 
C1 C6 AIX sing 7 n n 
C16 C6 AIX sing 8 n n 
C6 C12 AIX sing 9 n n 
C6 S1 AIX sing 10 n n 
C14 N1 AIX sing 11 n n 
N1 C3 AIX sing 12 n n 
N1 HN1 AIX sing 13 n n 
O2 C2 AIX doub 14 n n 
O1 C2 AIX sing 15 n n 
C2 C12 AIX sing 16 n n 
C12 N3 AIX sing 17 n n 
N3 C13 AIX sing 18 n n 
N3 HN3 AIX sing 19 n n 
C3 C4 AIX sing 20 n n 
C4 N2 AIX sing 21 n n 
C4 H4 AIX sing 22 n n 
C1 H1 AIX sing 23 n n 
C1 H1A AIX sing 24 n n 
C1 H1B AIX sing 25 n n 
C3 O3 AIX doub 26 n n 
C7 H7 AIX sing 27 n n 
C9 C10 AIX sing 28 n y 
C9 H9 AIX sing 29 n n 
C10 C11 AIX doub 30 n y 
C10 H10 AIX sing 31 n n 
C11 H11 AIX sing 32 n n 
C12 H12 AIX sing 33 n n 
S1 C13 AIX sing 34 n n 
C13 C14 AIX sing 35 n n 
C13 H13 AIX sing 36 n n 
C15 C14 AIX sing 37 n n 
C14 H14 AIX sing 38 n n 
O4 C15 AIX doub 39 n n 
C15 H15 AIX sing 40 n n 
C16 H16 AIX sing 41 n n 
C16 H16A AIX sing 42 n n 
C16 H16B AIX sing 43 n n 
N2 HN2 AIX sing 44 n n 
N2 HN2A AIX sing 45 n n 
O1 HO1 AIX sing 46 n n 
#
_atom_sites.entry_id                     6KGW 
_atom_sites.fract_transf_matrix[1][1]    0.010283 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004012 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011874 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011857 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CO A 1 701 1 CO CO . 
C 2 CO A 1 702 2 CO CO . 
D 2 CO A 1 703 4 CO CO . 
E 3 AIX A 1 704 1 AIX AIX . 
F 4 HOH A 1 801 76 HOH HOH . 
F 4 HOH A 2 802 109 HOH HOH . 
F 4 HOH A 3 803 104 HOH HOH . 
F 4 HOH A 4 804 56 HOH HOH . 
F 4 HOH A 5 805 107 HOH HOH . 
F 4 HOH A 6 806 65 HOH HOH . 
F 4 HOH A 7 807 41 HOH HOH . 
F 4 HOH A 8 808 87 HOH HOH . 
F 4 HOH A 9 809 5 HOH HOH . 
F 4 HOH A 10 810 68 HOH HOH . 
F 4 HOH A 11 811 37 HOH HOH . 
F 4 HOH A 12 812 92 HOH HOH . 
F 4 HOH A 13 813 89 HOH HOH . 
F 4 HOH A 14 814 10 HOH HOH . 
F 4 HOH A 15 815 64 HOH HOH . 
F 4 HOH A 16 816 94 HOH HOH . 
F 4 HOH A 17 817 80 HOH HOH . 
F 4 HOH A 18 818 1 HOH HOH . 
F 4 HOH A 19 819 4 HOH HOH . 
F 4 HOH A 20 820 67 HOH HOH . 
F 4 HOH A 21 821 44 HOH HOH . 
F 4 HOH A 22 822 39 HOH HOH . 
F 4 HOH A 23 823 99 HOH HOH . 
F 4 HOH A 24 824 6 HOH HOH . 
F 4 HOH A 25 825 69 HOH HOH . 
F 4 HOH A 26 826 11 HOH HOH . 
F 4 HOH A 27 827 28 HOH HOH . 
F 4 HOH A 28 828 103 HOH HOH . 
F 4 HOH A 29 829 49 HOH HOH . 
F 4 HOH A 30 830 2 HOH HOH . 
F 4 HOH A 31 831 15 HOH HOH . 
F 4 HOH A 32 832 51 HOH HOH . 
F 4 HOH A 33 833 31 HOH HOH . 
F 4 HOH A 34 834 79 HOH HOH . 
F 4 HOH A 35 835 91 HOH HOH . 
F 4 HOH A 36 836 98 HOH HOH . 
F 4 HOH A 37 837 12 HOH HOH . 
F 4 HOH A 38 838 58 HOH HOH . 
F 4 HOH A 39 839 93 HOH HOH . 
F 4 HOH A 40 840 78 HOH HOH . 
F 4 HOH A 41 841 16 HOH HOH . 
F 4 HOH A 42 842 34 HOH HOH . 
F 4 HOH A 43 843 26 HOH HOH . 
F 4 HOH A 44 844 48 HOH HOH . 
F 4 HOH A 45 845 82 HOH HOH . 
F 4 HOH A 46 846 18 HOH HOH . 
F 4 HOH A 47 847 13 HOH HOH . 
F 4 HOH A 48 848 38 HOH HOH . 
F 4 HOH A 49 849 95 HOH HOH . 
F 4 HOH A 50 850 27 HOH HOH . 
F 4 HOH A 51 851 20 HOH HOH . 
F 4 HOH A 52 852 74 HOH HOH . 
F 4 HOH A 53 853 97 HOH HOH . 
F 4 HOH A 54 854 125 HOH HOH . 
F 4 HOH A 55 855 70 HOH HOH . 
F 4 HOH A 56 856 19 HOH HOH . 
F 4 HOH A 57 857 7 HOH HOH . 
F 4 HOH A 58 858 72 HOH HOH . 
F 4 HOH A 59 859 21 HOH HOH . 
F 4 HOH A 60 860 63 HOH HOH . 
F 4 HOH A 61 861 84 HOH HOH . 
F 4 HOH A 62 862 128 HOH HOH . 
F 4 HOH A 63 863 81 HOH HOH . 
F 4 HOH A 64 864 60 HOH HOH . 
F 4 HOH A 65 865 83 HOH HOH . 
F 4 HOH A 66 866 127 HOH HOH . 
F 4 HOH A 67 867 110 HOH HOH . 
F 4 HOH A 68 868 43 HOH HOH . 
F 4 HOH A 69 869 102 HOH HOH . 
F 4 HOH A 70 870 120 HOH HOH . 
F 4 HOH A 71 871 50 HOH HOH . 
F 4 HOH A 72 872 111 HOH HOH . 
F 4 HOH A 73 873 36 HOH HOH . 
F 4 HOH A 74 874 33 HOH HOH . 
F 4 HOH A 75 875 29 HOH HOH . 
F 4 HOH A 76 876 71 HOH HOH . 
F 4 HOH A 77 877 25 HOH HOH . 
F 4 HOH A 78 878 96 HOH HOH . 
F 4 HOH A 79 879 32 HOH HOH . 
F 4 HOH A 80 880 57 HOH HOH . 
F 4 HOH A 81 881 62 HOH HOH . 
F 4 HOH A 82 882 116 HOH HOH . 
F 4 HOH A 83 883 40 HOH HOH . 
F 4 HOH A 84 884 47 HOH HOH . 
F 4 HOH A 85 885 75 HOH HOH . 
F 4 HOH A 86 886 35 HOH HOH . 
F 4 HOH A 87 887 66 HOH HOH . 
F 4 HOH A 88 888 14 HOH HOH . 
F 4 HOH A 89 889 90 HOH HOH . 
F 4 HOH A 90 890 59 HOH HOH . 
F 4 HOH A 91 891 45 HOH HOH . 
F 4 HOH A 92 892 22 HOH HOH . 
F 4 HOH A 93 893 17 HOH HOH . 
F 4 HOH A 94 894 122 HOH HOH . 
F 4 HOH A 95 895 113 HOH HOH . 
F 4 HOH A 96 896 3 HOH HOH . 
F 4 HOH A 97 897 77 HOH HOH . 
F 4 HOH A 98 898 53 HOH HOH . 
F 4 HOH A 99 899 123 HOH HOH . 
F 4 HOH A 100 900 121 HOH HOH . 
F 4 HOH A 101 901 55 HOH HOH . 
F 4 HOH A 102 902 114 HOH HOH . 
F 4 HOH A 103 903 117 HOH HOH . 
F 4 HOH A 104 904 124 HOH HOH . 
F 4 HOH A 105 905 54 HOH HOH . 
F 4 HOH A 106 906 30 HOH HOH . 
F 4 HOH A 107 907 105 HOH HOH . 
F 4 HOH A 108 908 100 HOH HOH . 
F 4 HOH A 109 909 119 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 AIX . . . E 3 27.062 5.483 -10.912 1 65.66 ? C8 AIX 704 A 1 
HETATM 2 C C5 AIX . . . E 3 25.055 4.527 -9.979 1 57.43 ? C5 AIX 704 A 1 
HETATM 3 C C6 AIX . . . E 3 27.879 0.5 -8.526 1 48.87 ? C6 AIX 704 A 1 
HETATM 4 N N1 AIX . . . E 3 24.684 2.623 -7.498 1 58.36 ? N1 AIX 704 A 1 
HETATM 5 C C2 AIX . . . E 3 29.084 0.516 -6.246 1 51.79 ? C2 AIX 704 A 1 
HETATM 6 N N3 AIX . . . E 3 26.672 0.194 -6.404 1 49.17 ? N3 AIX 704 A 1 
HETATM 7 C C4 AIX . . . E 3 23.997 4.493 -8.89 1 56.01 ? C4 AIX 704 A 1 
HETATM 8 C C1 AIX . . . E 3 28.501 -0.863 -8.828 1 43.54 ? C1 AIX 704 A 1 
HETATM 9 C C3 AIX . . . E 3 23.76 3.066 -8.364 1 59.22 ? C3 AIX 704 A 1 
HETATM 10 C C7 AIX . . . E 3 26.072 5.471 -9.942 1 64.05 ? C7 AIX 704 A 1 
HETATM 11 C C9 AIX . . . E 3 27.048 4.553 -11.929 1 59.44 ? C9 AIX 704 A 1 
HETATM 12 C C10 AIX . . . E 3 26.037 3.616 -11.981 1 57.62 ? C10 AIX 704 A 1 
HETATM 13 C C11 AIX . . . E 3 25.044 3.606 -11.016 1 59.75 ? C11 AIX 704 A 1 
HETATM 14 C C12 AIX . . . E 3 27.82 0.872 -7.013 1 50.21 ? C12 AIX 704 A 1 
HETATM 15 C C13 AIX . . . E 3 25.513 0.22 -7.268 1 49.72 ? C13 AIX 704 A 1 
HETATM 16 C C14 AIX . . . E 3 24.585 1.371 -6.748 1 51.42 ? C14 AIX 704 A 1 
HETATM 17 C C15 AIX . . . E 3 24.945 1.529 -5.228 1 53.83 ? C15 AIX 704 A 1 
HETATM 18 C C16 AIX . . . E 3 28.582 1.606 -9.311 1 45.51 ? C16 AIX 704 A 1 
HETATM 19 N N2 AIX . . . E 3 22.75 5.144 -9.334 1 62.87 ? N2 AIX 704 A 1 
HETATM 20 O O1 AIX . . . E 3 28.913 -0.556 -5.54 1 52.84 ? O1 AIX 704 A 1 
HETATM 21 O O2 AIX . . . E 3 30.132 1.156 -6.288 1 57.77 ? O2 AIX 704 A 1 
HETATM 22 O O3 AIX . . . E 3 22.78 2.413 -8.714 1 57.6 ? O3 AIX 704 A 1 
HETATM 23 O O4 AIX . . . E 3 25.776 2.311 -4.851 1 53.59 ? O4 AIX 704 A 1 
HETATM 24 S S1 AIX . . . E 3 26.098 0.469 -8.995 1 58.52 ? S1 AIX 704 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           24 
#