data_6KGY
#
_model_server_result.job_id            KLtFZpwnDyG2jJaXp45k6Q 
_model_server_result.datetime_utc      '2024-11-05 15:26:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kgy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    6KGY 
#
_exptl.entry_id    6KGY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.324 
_cell.angle_gamma         90 
_cell.entry_id            6KGY 
_cell.length_a            72.455 
_cell.length_b            189.429 
_cell.length_c            95.422 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KGY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1 
C,D,H,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 K N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     6KGY 
_atom_sites.fract_transf_matrix[1][1]    0.013802 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004305 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005279 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010978 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 501 442 FAD FAD . 
F 2 FAD B 1 501 442 FAD FAD . 
G 3 CL B 1 502 444 CL CL . 
H 2 FAD C 1 501 442 FAD FAD . 
I 3 CL C 1 502 443 CL CL . 
J 3 CL C 1 503 445 CL CL . 
K 2 FAD D 1 501 442 FAD FAD . 
L 4 HOH A 1 601 450 HOH HOH . 
L 4 HOH A 2 602 448 HOH HOH . 
L 4 HOH A 3 603 443 HOH HOH . 
L 4 HOH A 4 604 444 HOH HOH . 
L 4 HOH A 5 605 447 HOH HOH . 
M 4 HOH B 1 601 450 HOH HOH . 
M 4 HOH B 2 602 449 HOH HOH . 
M 4 HOH B 3 603 445 HOH HOH . 
M 4 HOH B 4 604 444 HOH HOH . 
M 4 HOH B 5 605 451 HOH HOH . 
M 4 HOH B 6 606 448 HOH HOH . 
M 4 HOH B 7 607 446 HOH HOH . 
M 4 HOH B 8 608 445 HOH HOH . 
M 4 HOH B 9 609 447 HOH HOH . 
M 4 HOH B 10 610 452 HOH HOH . 
M 4 HOH B 11 611 443 HOH HOH . 
M 4 HOH B 12 612 449 HOH HOH . 
M 4 HOH B 13 613 446 HOH HOH . 
N 4 HOH C 1 601 449 HOH HOH . 
N 4 HOH C 2 602 448 HOH HOH . 
N 4 HOH C 3 603 447 HOH HOH . 
N 4 HOH C 4 604 447 HOH HOH . 
O 4 HOH D 1 601 446 HOH HOH . 
O 4 HOH D 2 602 443 HOH HOH . 
O 4 HOH D 3 603 445 HOH HOH . 
O 4 HOH D 4 604 444 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . F 2 -7.316 -26.322 31.572 1 20.71 ? PA FAD 501 B 1 
HETATM 2 O O1A FAD . . . F 2 -7.753 -27.369 30.616 1 31.75 -1 O1A FAD 501 B 1 
HETATM 3 O O2A FAD . . . F 2 -6.743 -25.058 30.922 1 15.27 ? O2A FAD 501 B 1 
HETATM 4 O O5B FAD . . . F 2 -6.285 -26.933 32.604 1 26.93 ? O5B FAD 501 B 1 
HETATM 5 C C5B FAD . . . F 2 -5.822 -26.174 33.74 1 26.18 ? C5B FAD 501 B 1 
HETATM 6 C C4B FAD . . . F 2 -4.346 -26.41 33.951 1 36.97 ? C4B FAD 501 B 1 
HETATM 7 O O4B FAD . . . F 2 -4.14 -27.176 35.147 1 27.45 ? O4B FAD 501 B 1 
HETATM 8 C C3B FAD . . . F 2 -3.637 -27.204 32.856 1 31.97 ? C3B FAD 501 B 1 
HETATM 9 O O3B FAD . . . F 2 -3.076 -26.326 31.888 1 35.9 ? O3B FAD 501 B 1 
HETATM 10 C C2B FAD . . . F 2 -2.547 -27.988 33.613 1 36.62 ? C2B FAD 501 B 1 
HETATM 11 O O2B FAD . . . F 2 -1.24 -27.551 33.258 1 25.81 ? O2B FAD 501 B 1 
HETATM 12 C C1B FAD . . . F 2 -2.828 -27.675 35.087 1 33.25 ? C1B FAD 501 B 1 
HETATM 13 N N9A FAD . . . F 2 -2.722 -28.824 35.982 1 34.36 ? N9A FAD 501 B 1 
HETATM 14 C C8A FAD . . . F 2 -3.018 -30.131 35.698 1 40.37 ? C8A FAD 501 B 1 
HETATM 15 N N7A FAD . . . F 2 -2.822 -30.955 36.699 1 38.25 ? N7A FAD 501 B 1 
HETATM 16 C C5A FAD . . . F 2 -2.361 -30.131 37.716 1 34.5 ? C5A FAD 501 B 1 
HETATM 17 C C6A FAD . . . F 2 -1.97 -30.389 39.044 1 39.46 ? C6A FAD 501 B 1 
HETATM 18 N N6A FAD . . . F 2 -1.981 -31.603 39.601 1 46.51 ? N6A FAD 501 B 1 
HETATM 19 N N1A FAD . . . F 2 -1.562 -29.34 39.793 1 41.51 ? N1A FAD 501 B 1 
HETATM 20 C C2A FAD . . . F 2 -1.549 -28.123 39.242 1 39.17 ? C2A FAD 501 B 1 
HETATM 21 N N3A FAD . . . F 2 -1.894 -27.76 38.005 1 41.96 ? N3A FAD 501 B 1 
HETATM 22 C C4A FAD . . . F 2 -2.293 -28.816 37.288 1 36.8 ? C4A FAD 501 B 1 
HETATM 23 N N1 FAD . . . F 2 -12.633 -25.285 23.648 1 33.4 ? N1 FAD 501 B 1 
HETATM 24 C C2 FAD . . . F 2 -13.476 -24.405 23.034 1 32.82 ? C2 FAD 501 B 1 
HETATM 25 O O2 FAD . . . F 2 -14.326 -23.77 23.668 1 36.55 ? O2 FAD 501 B 1 
HETATM 26 N N3 FAD . . . F 2 -13.388 -24.213 21.666 1 30.65 ? N3 FAD 501 B 1 
HETATM 27 C C4 FAD . . . F 2 -12.502 -24.838 20.813 1 33.13 ? C4 FAD 501 B 1 
HETATM 28 O O4 FAD . . . F 2 -12.518 -24.584 19.609 1 33.7 ? O4 FAD 501 B 1 
HETATM 29 C C4X FAD . . . F 2 -11.61 -25.77 21.474 1 31.49 ? C4X FAD 501 B 1 
HETATM 30 N N5 FAD . . . F 2 -10.737 -26.406 20.744 1 36.75 ? N5 FAD 501 B 1 
HETATM 31 C C5X FAD . . . F 2 -9.884 -27.297 21.378 1 38.86 ? C5X FAD 501 B 1 
HETATM 32 C C6 FAD . . . F 2 -8.945 -27.986 20.611 1 35.64 ? C6 FAD 501 B 1 
HETATM 33 C C7 FAD . . . F 2 -8.067 -28.89 21.199 1 32.98 ? C7 FAD 501 B 1 
HETATM 34 C C7M FAD . . . F 2 -7.065 -29.616 20.339 1 17.24 ? C7M FAD 501 B 1 
HETATM 35 C C8 FAD . . . F 2 -8.125 -29.113 22.585 1 35.06 ? C8 FAD 501 B 1 
HETATM 36 C C8M FAD . . . F 2 -7.188 -30.084 23.253 1 33.73 ? C8M FAD 501 B 1 
HETATM 37 C C9 FAD . . . F 2 -9.061 -28.426 23.353 1 21.71 ? C9 FAD 501 B 1 
HETATM 38 C C9A FAD . . . F 2 -9.937 -27.524 22.761 1 30.5 ? C9A FAD 501 B 1 
HETATM 39 N N10 FAD . . . F 2 -10.894 -26.811 23.512 1 33.66 ? N10 FAD 501 B 1 
HETATM 40 C C10 FAD . . . F 2 -11.75 -25.926 22.899 1 32.17 ? C10 FAD 501 B 1 
HETATM 41 C C1' FAD . . . F 2 -11.003 -27.005 24.965 1 26.55 ? C1' FAD 501 B 1 
HETATM 42 C C2' FAD . . . F 2 -10.338 -25.893 25.77 1 30.06 ? C2' FAD 501 B 1 
HETATM 43 O O2' FAD . . . F 2 -9.054 -25.583 25.228 1 44.61 ? O2' FAD 501 B 1 
HETATM 44 C C3' FAD . . . F 2 -10.185 -26.344 27.224 1 24.32 ? C3' FAD 501 B 1 
HETATM 45 O O3' FAD . . . F 2 -10.867 -27.579 27.405 1 38.2 ? O3' FAD 501 B 1 
HETATM 46 C C4' FAD . . . F 2 -10.709 -25.333 28.244 1 38.38 ? C4' FAD 501 B 1 
HETATM 47 O O4' FAD . . . F 2 -9.738 -24.303 28.431 1 30.62 ? O4' FAD 501 B 1 
HETATM 48 C C5' FAD . . . F 2 -11.063 -25.97 29.571 1 25.52 ? C5' FAD 501 B 1 
HETATM 49 O O5' FAD . . . F 2 -9.902 -25.946 30.427 1 25.53 ? O5' FAD 501 B 1 
HETATM 50 P P FAD . . . F 2 -10.04 -25.833 31.992 1 18.66 ? P FAD 501 B 1 
HETATM 51 O O1P FAD . . . F 2 -10.606 -24.458 32.36 1 32.43 -1 O1P FAD 501 B 1 
HETATM 52 O O2P FAD . . . F 2 -10.793 -26.983 32.544 1 16.08 ? O2P FAD 501 B 1 
HETATM 53 O O3P FAD . . . F 2 -8.533 -25.884 32.488 1 16.62 ? O3P FAD 501 B 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           53 
#