data_6KGY
#
_model_server_result.job_id            Eh8ztNUAStgtI0-KfLVfJg 
_model_server_result.datetime_utc      '2024-11-05 15:26:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kgy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":501}' 
#
_entry.id    6KGY 
#
_exptl.entry_id    6KGY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.324 
_cell.angle_gamma         90 
_cell.entry_id            6KGY 
_cell.length_a            72.455 
_cell.length_b            189.429 
_cell.length_c            95.422 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KGY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1 
C,D,H,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 K N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     6KGY 
_atom_sites.fract_transf_matrix[1][1]    0.013802 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004305 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005279 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010978 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 501 442 FAD FAD . 
F 2 FAD B 1 501 442 FAD FAD . 
G 3 CL B 1 502 444 CL CL . 
H 2 FAD C 1 501 442 FAD FAD . 
I 3 CL C 1 502 443 CL CL . 
J 3 CL C 1 503 445 CL CL . 
K 2 FAD D 1 501 442 FAD FAD . 
L 4 HOH A 1 601 450 HOH HOH . 
L 4 HOH A 2 602 448 HOH HOH . 
L 4 HOH A 3 603 443 HOH HOH . 
L 4 HOH A 4 604 444 HOH HOH . 
L 4 HOH A 5 605 447 HOH HOH . 
M 4 HOH B 1 601 450 HOH HOH . 
M 4 HOH B 2 602 449 HOH HOH . 
M 4 HOH B 3 603 445 HOH HOH . 
M 4 HOH B 4 604 444 HOH HOH . 
M 4 HOH B 5 605 451 HOH HOH . 
M 4 HOH B 6 606 448 HOH HOH . 
M 4 HOH B 7 607 446 HOH HOH . 
M 4 HOH B 8 608 445 HOH HOH . 
M 4 HOH B 9 609 447 HOH HOH . 
M 4 HOH B 10 610 452 HOH HOH . 
M 4 HOH B 11 611 443 HOH HOH . 
M 4 HOH B 12 612 449 HOH HOH . 
M 4 HOH B 13 613 446 HOH HOH . 
N 4 HOH C 1 601 449 HOH HOH . 
N 4 HOH C 2 602 448 HOH HOH . 
N 4 HOH C 3 603 447 HOH HOH . 
N 4 HOH C 4 604 447 HOH HOH . 
O 4 HOH D 1 601 446 HOH HOH . 
O 4 HOH D 2 602 443 HOH HOH . 
O 4 HOH D 3 603 445 HOH HOH . 
O 4 HOH D 4 604 444 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . H 2 -43.586 -34.705 45.749 1 21.31 ? PA FAD 501 C 1 
HETATM 2 O O1A FAD . . . H 2 -44.107 -33.423 46.283 1 32.52 -1 O1A FAD 501 C 1 
HETATM 3 O O2A FAD . . . H 2 -42.835 -35.578 46.758 1 20.06 ? O2A FAD 501 C 1 
HETATM 4 O O5B FAD . . . H 2 -42.655 -34.457 44.495 1 22.34 ? O5B FAD 501 C 1 
HETATM 5 C C5B FAD . . . H 2 -41.48 -33.624 44.587 1 32.41 ? C5B FAD 501 C 1 
HETATM 6 C C4B FAD . . . H 2 -40.359 -34.238 43.785 1 30.02 ? C4B FAD 501 C 1 
HETATM 7 O O4B FAD . . . H 2 -40.229 -33.558 42.513 1 28.66 ? O4B FAD 501 C 1 
HETATM 8 C C3B FAD . . . H 2 -38.98 -34.187 44.448 1 26.22 ? C3B FAD 501 C 1 
HETATM 9 O O3B FAD . . . H 2 -38.327 -35.447 44.334 1 30.1 ? O3B FAD 501 C 1 
HETATM 10 C C2B FAD . . . H 2 -38.25 -33.1 43.653 1 22.17 ? C2B FAD 501 C 1 
HETATM 11 O O2B FAD . . . H 2 -36.843 -33.306 43.619 1 28.39 ? O2B FAD 501 C 1 
HETATM 12 C C1B FAD . . . H 2 -38.862 -33.308 42.273 1 29.94 ? C1B FAD 501 C 1 
HETATM 13 N N9A FAD . . . H 2 -38.736 -32.167 41.37 1 27.64 ? N9A FAD 501 C 1 
HETATM 14 C C8A FAD . . . H 2 -38.966 -30.847 41.656 1 30.75 ? C8A FAD 501 C 1 
HETATM 15 N N7A FAD . . . H 2 -38.759 -30.036 40.645 1 29.67 ? N7A FAD 501 C 1 
HETATM 16 C C5A FAD . . . H 2 -38.367 -30.884 39.62 1 27.66 ? C5A FAD 501 C 1 
HETATM 17 C C6A FAD . . . H 2 -38.002 -30.65 38.28 1 22.81 ? C6A FAD 501 C 1 
HETATM 18 N N6A FAD . . . H 2 -37.976 -29.439 37.716 1 25.28 ? N6A FAD 501 C 1 
HETATM 19 N N1A FAD . . . H 2 -37.659 -31.719 37.527 1 27.89 ? N1A FAD 501 C 1 
HETATM 20 C C2A FAD . . . H 2 -37.683 -32.932 38.083 1 19.97 ? C2A FAD 501 C 1 
HETATM 21 N N3A FAD . . . H 2 -38.009 -33.274 39.332 1 29.65 ? N3A FAD 501 C 1 
HETATM 22 C C4A FAD . . . H 2 -38.344 -32.199 40.054 1 24.8 ? C4A FAD 501 C 1 
HETATM 23 N N1 FAD . . . H 2 -49.015 -35.434 53.671 1 43.72 ? N1 FAD 501 C 1 
HETATM 24 C C2 FAD . . . H 2 -49.868 -36.273 54.329 1 38.34 ? C2 FAD 501 C 1 
HETATM 25 O O2 FAD . . . H 2 -50.767 -36.881 53.737 1 43.92 ? O2 FAD 501 C 1 
HETATM 26 N N3 FAD . . . H 2 -49.734 -36.456 55.694 1 45.43 ? N3 FAD 501 C 1 
HETATM 27 C C4 FAD . . . H 2 -48.791 -35.859 56.506 1 44.98 ? C4 FAD 501 C 1 
HETATM 28 O O4 FAD . . . H 2 -48.771 -36.101 57.711 1 42.41 ? O4 FAD 501 C 1 
HETATM 29 C C4X FAD . . . H 2 -47.889 -34.97 55.799 1 43.98 ? C4X FAD 501 C 1 
HETATM 30 N N5 FAD . . . H 2 -46.963 -34.362 56.487 1 39.8 ? N5 FAD 501 C 1 
HETATM 31 C C5X FAD . . . H 2 -46.102 -33.513 55.812 1 35.19 ? C5X FAD 501 C 1 
HETATM 32 C C6 FAD . . . H 2 -45.107 -32.855 56.533 1 34.16 ? C6 FAD 501 C 1 
HETATM 33 C C7 FAD . . . H 2 -44.217 -31.992 55.901 1 37.92 ? C7 FAD 501 C 1 
HETATM 34 C C7M FAD . . . H 2 -43.154 -31.298 56.712 1 29.59 ? C7M FAD 501 C 1 
HETATM 35 C C8 FAD . . . H 2 -44.321 -31.781 54.516 1 29.31 ? C8 FAD 501 C 1 
HETATM 36 C C8M FAD . . . H 2 -43.373 -30.855 53.802 1 28.74 ? C8M FAD 501 C 1 
HETATM 37 C C9 FAD . . . H 2 -45.313 -32.436 53.793 1 36.98 ? C9 FAD 501 C 1 
HETATM 38 C C9A FAD . . . H 2 -46.2 -33.297 54.429 1 39.34 ? C9A FAD 501 C 1 
HETATM 39 N N10 FAD . . . H 2 -47.214 -33.978 53.724 1 31.73 ? N10 FAD 501 C 1 
HETATM 40 C C10 FAD . . . H 2 -48.08 -34.821 54.379 1 43.28 ? C10 FAD 501 C 1 
HETATM 41 C C1' FAD . . . H 2 -47.374 -33.794 52.275 1 27.88 ? C1' FAD 501 C 1 
HETATM 42 C C2' FAD . . . H 2 -46.698 -34.887 51.455 1 31.5 ? C2' FAD 501 C 1 
HETATM 43 O O2' FAD . . . H 2 -45.509 -35.335 52.106 1 34.56 ? O2' FAD 501 C 1 
HETATM 44 C C3' FAD . . . H 2 -46.344 -34.335 50.073 1 27.27 ? C3' FAD 501 C 1 
HETATM 45 O O3' FAD . . . H 2 -46.701 -32.959 50.012 1 34.37 ? O3' FAD 501 C 1 
HETATM 46 C C4' FAD . . . H 2 -47.02 -35.074 48.918 1 27.49 ? C4' FAD 501 C 1 
HETATM 47 O O4' FAD . . . H 2 -46.574 -36.431 48.899 1 24.01 ? O4' FAD 501 C 1 
HETATM 48 C C5' FAD . . . H 2 -46.768 -34.414 47.579 1 34.28 ? C5' FAD 501 C 1 
HETATM 49 O O5' FAD . . . H 2 -46.831 -35.416 46.541 1 17.71 ? O5' FAD 501 C 1 
HETATM 50 P P FAD . . . H 2 -46.294 -35.122 45.09 1 23.02 ? P FAD 501 C 1 
HETATM 51 O O1P FAD . . . H 2 -47.004 -36.049 44.097 1 28.66 -1 O1P FAD 501 C 1 
HETATM 52 O O2P FAD . . . H 2 -46.378 -33.678 44.773 1 30.89 ? O2P FAD 501 C 1 
HETATM 53 O O3P FAD . . . H 2 -44.777 -35.575 45.168 1 23.9 ? O3P FAD 501 C 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           53 
#