data_6KGY
#
_model_server_result.job_id            XTX-rvMzc3WkccrxP2nc3g 
_model_server_result.datetime_utc      '2024-11-05 15:34:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kgy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":501}' 
#
_entry.id    6KGY 
#
_exptl.entry_id    6KGY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.324 
_cell.angle_gamma         90 
_cell.entry_id            6KGY 
_cell.length_a            72.455 
_cell.length_b            189.429 
_cell.length_c            95.422 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KGY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1 
C,D,H,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 K N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     6KGY 
_atom_sites.fract_transf_matrix[1][1]    0.013802 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004305 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005279 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010978 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 501 442 FAD FAD . 
F 2 FAD B 1 501 442 FAD FAD . 
G 3 CL B 1 502 444 CL CL . 
H 2 FAD C 1 501 442 FAD FAD . 
I 3 CL C 1 502 443 CL CL . 
J 3 CL C 1 503 445 CL CL . 
K 2 FAD D 1 501 442 FAD FAD . 
L 4 HOH A 1 601 450 HOH HOH . 
L 4 HOH A 2 602 448 HOH HOH . 
L 4 HOH A 3 603 443 HOH HOH . 
L 4 HOH A 4 604 444 HOH HOH . 
L 4 HOH A 5 605 447 HOH HOH . 
M 4 HOH B 1 601 450 HOH HOH . 
M 4 HOH B 2 602 449 HOH HOH . 
M 4 HOH B 3 603 445 HOH HOH . 
M 4 HOH B 4 604 444 HOH HOH . 
M 4 HOH B 5 605 451 HOH HOH . 
M 4 HOH B 6 606 448 HOH HOH . 
M 4 HOH B 7 607 446 HOH HOH . 
M 4 HOH B 8 608 445 HOH HOH . 
M 4 HOH B 9 609 447 HOH HOH . 
M 4 HOH B 10 610 452 HOH HOH . 
M 4 HOH B 11 611 443 HOH HOH . 
M 4 HOH B 12 612 449 HOH HOH . 
M 4 HOH B 13 613 446 HOH HOH . 
N 4 HOH C 1 601 449 HOH HOH . 
N 4 HOH C 2 602 448 HOH HOH . 
N 4 HOH C 3 603 447 HOH HOH . 
N 4 HOH C 4 604 447 HOH HOH . 
O 4 HOH D 1 601 446 HOH HOH . 
O 4 HOH D 2 602 443 HOH HOH . 
O 4 HOH D 3 603 445 HOH HOH . 
O 4 HOH D 4 604 444 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . K 2 -66.768 -60.747 85.062 1 38.31 ? PA FAD 501 D 1 
HETATM 2 O O1A FAD . . . K 2 -65.736 -61.803 85.194 1 30.08 -1 O1A FAD 501 D 1 
HETATM 3 O O2A FAD . . . K 2 -66.275 -59.421 84.474 1 28.26 ? O2A FAD 501 D 1 
HETATM 4 O O5B FAD . . . K 2 -67.476 -60.482 86.442 1 39.27 ? O5B FAD 501 D 1 
HETATM 5 C C5B FAD . . . K 2 -67.459 -61.468 87.495 1 29.96 ? C5B FAD 501 D 1 
HETATM 6 C C4B FAD . . . K 2 -67.861 -60.795 88.783 1 31 ? C4B FAD 501 D 1 
HETATM 7 O O4B FAD . . . K 2 -68.855 -61.593 89.467 1 31.9 ? O4B FAD 501 D 1 
HETATM 8 C C3B FAD . . . K 2 -66.724 -60.559 89.78 1 35.59 ? C3B FAD 501 D 1 
HETATM 9 O O3B FAD . . . K 2 -66.76 -59.222 90.264 1 41.12 ? O3B FAD 501 D 1 
HETATM 10 C C2B FAD . . . K 2 -67.008 -61.578 90.889 1 35.71 ? C2B FAD 501 D 1 
HETATM 11 O O2B FAD . . . K 2 -66.571 -61.117 92.162 1 41.75 ? O2B FAD 501 D 1 
HETATM 12 C C1B FAD . . . K 2 -68.529 -61.649 90.836 1 30.36 ? C1B FAD 501 D 1 
HETATM 13 N N9A FAD . . . K 2 -69.1 -62.866 91.406 1 35.43 ? N9A FAD 501 D 1 
HETATM 14 C C8A FAD . . . K 2 -68.786 -64.16 91.086 1 40.81 ? C8A FAD 501 D 1 
HETATM 15 N N7A FAD . . . K 2 -69.46 -65.058 91.765 1 37.27 ? N7A FAD 501 D 1 
HETATM 16 C C5A FAD . . . K 2 -70.274 -64.3 92.593 1 41.92 ? C5A FAD 501 D 1 
HETATM 17 C C6A FAD . . . K 2 -71.232 -64.652 93.564 1 40.63 ? C6A FAD 501 D 1 
HETATM 18 N N6A FAD . . . K 2 -71.546 -65.912 93.877 1 45.42 ? N6A FAD 501 D 1 
HETATM 19 N N1A FAD . . . K 2 -71.866 -63.649 94.211 1 34.72 ? N1A FAD 501 D 1 
HETATM 20 C C2A FAD . . . K 2 -71.556 -62.387 93.904 1 35.81 ? C2A FAD 501 D 1 
HETATM 21 N N3A FAD . . . K 2 -70.674 -61.935 93.01 1 33.83 ? N3A FAD 501 D 1 
HETATM 22 C C4A FAD . . . K 2 -70.062 -62.948 92.384 1 39.71 ? C4A FAD 501 D 1 
HETATM 23 N N1 FAD . . . K 2 -61.192 -60.002 77.432 1 35.27 ? N1 FAD 501 D 1 
HETATM 24 C C2 FAD . . . K 2 -61.007 -59.276 76.291 1 37.51 ? C2 FAD 501 D 1 
HETATM 25 O O2 FAD . . . K 2 -61.958 -58.918 75.588 1 39.9 ? O2 FAD 501 D 1 
HETATM 26 N N3 FAD . . . K 2 -59.726 -58.928 75.901 1 39.22 ? N3 FAD 501 D 1 
HETATM 27 C C4 FAD . . . K 2 -58.56 -59.243 76.565 1 47.42 ? C4 FAD 501 D 1 
HETATM 28 O O4 FAD . . . K 2 -57.474 -58.876 76.119 1 41.53 ? O4 FAD 501 D 1 
HETATM 29 C C4X FAD . . . K 2 -58.766 -60.013 77.777 1 49.55 ? C4X FAD 501 D 1 
HETATM 30 N N5 FAD . . . K 2 -57.716 -60.357 78.472 1 48.95 ? N5 FAD 501 D 1 
HETATM 31 C C5X FAD . . . K 2 -57.914 -61.092 79.63 1 49 ? C5X FAD 501 D 1 
HETATM 32 C C6 FAD . . . K 2 -56.804 -61.468 80.385 1 39.72 ? C6 FAD 501 D 1 
HETATM 33 C C7 FAD . . . K 2 -56.95 -62.206 81.555 1 30.9 ? C7 FAD 501 D 1 
HETATM 34 C C7M FAD . . . K 2 -55.728 -62.593 82.345 1 30.88 ? C7M FAD 501 D 1 
HETATM 35 C C8 FAD . . . K 2 -58.235 -62.579 81.983 1 42.9 ? C8 FAD 501 D 1 
HETATM 36 C C8M FAD . . . K 2 -58.43 -63.378 83.245 1 48.46 ? C8M FAD 501 D 1 
HETATM 37 C C9 FAD . . . K 2 -59.346 -62.205 81.232 1 50.45 ? C9 FAD 501 D 1 
HETATM 38 C C9A FAD . . . K 2 -59.195 -61.468 80.064 1 53.41 ? C9A FAD 501 D 1 
HETATM 39 N N10 FAD . . . K 2 -60.3 -61.071 79.284 1 51.38 ? N10 FAD 501 D 1 
HETATM 40 C C10 FAD . . . K 2 -60.122 -60.346 78.13 1 41.37 ? C10 FAD 501 D 1 
HETATM 41 C C1' FAD . . . K 2 -61.667 -61.437 79.681 1 44.8 ? C1' FAD 501 D 1 
HETATM 42 C C2' FAD . . . K 2 -62.409 -60.311 80.393 1 46.6 ? C2' FAD 501 D 1 
HETATM 43 O O2' FAD . . . K 2 -61.573 -59.711 81.384 1 37.15 ? O2' FAD 501 D 1 
HETATM 44 C C3' FAD . . . K 2 -63.663 -60.877 81.061 1 45.61 ? C3' FAD 501 D 1 
HETATM 45 O O3' FAD . . . K 2 -63.606 -62.299 81.029 1 50.54 ? O3' FAD 501 D 1 
HETATM 46 C C4' FAD . . . K 2 -64.974 -60.422 80.42 1 43.51 ? C4' FAD 501 D 1 
HETATM 47 O O4' FAD . . . K 2 -65.254 -59.079 80.814 1 57.52 ? O4' FAD 501 D 1 
HETATM 48 C C5' FAD . . . K 2 -66.136 -61.328 80.767 1 38.01 ? C5' FAD 501 D 1 
HETATM 49 O O5' FAD . . . K 2 -66.531 -61.085 82.133 1 45.33 ? O5' FAD 501 D 1 
HETATM 50 P P FAD . . . K 2 -68.037 -61.198 82.58 1 18.38 ? P FAD 501 D 1 
HETATM 51 O O1P FAD . . . K 2 -68.79 -59.92 82.201 1 27.14 -1 O1P FAD 501 D 1 
HETATM 52 O O2P FAD . . . K 2 -68.628 -62.447 82.047 1 40.15 ? O2P FAD 501 D 1 
HETATM 53 O O3P FAD . . . K 2 -67.965 -61.268 84.163 1 29.64 ? O3P FAD 501 D 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           53 
#