data_6KH1 # _model_server_result.job_id 6woyWEL3cNKK6IGzUktbsw _model_server_result.datetime_utc '2024-10-10 10:25:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kh1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6KH1 # _exptl.entry_id 6KH1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KH1 _cell.length_a 118.859 _cell.length_b 118.859 _cell.length_c 118.859 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KH1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 207 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 118.859 118.859 0 3 'crystal symmetry operation' 3_654 -x+1,y,-z-1 -1 0 0 0 1 0 0 0 -1 118.859 0 -118.859 4 'crystal symmetry operation' 4_564 x,-y+1,-z-1 1 0 0 0 -1 0 0 0 -1 0 118.859 -118.859 5 'crystal symmetry operation' 5_654 z+1,x,y-1 0 0 1 1 0 0 0 1 0 118.859 0 -118.859 6 'crystal symmetry operation' 6_665 z+1,-x+1,-y 0 0 1 -1 0 0 0 -1 0 118.859 118.859 0 7 'crystal symmetry operation' 7_564 -z,-x+1,y-1 0 0 -1 -1 0 0 0 1 0 0 118.859 -118.859 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_564 y,z+1,x-1 0 1 0 0 0 1 1 0 0 0 118.859 -118.859 10 'crystal symmetry operation' 10_665 -y+1,z+1,-x 0 -1 0 0 0 1 -1 0 0 118.859 118.859 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_654 -y+1,-z,x-1 0 -1 0 0 0 -1 1 0 0 118.859 0 -118.859 13 'crystal symmetry operation' 13_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -118.859 14 'crystal symmetry operation' 14_664 -y+1,-x+1,-z-1 0 -1 0 -1 0 0 0 0 -1 118.859 118.859 -118.859 15 'crystal symmetry operation' 15_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 118.859 0 16 'crystal symmetry operation' 16_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 118.859 0 0 17 'crystal symmetry operation' 17_565 x,z+1,-y 1 0 0 0 0 1 0 -1 0 0 118.859 0 18 'crystal symmetry operation' 18_664 -x+1,z+1,y-1 -1 0 0 0 0 1 0 1 0 118.859 118.859 -118.859 19 'crystal symmetry operation' 19_655 -x+1,-z,-y -1 0 0 0 0 -1 0 -1 0 118.859 0 0 20 'crystal symmetry operation' 20_554 x,-z,y-1 1 0 0 0 0 -1 0 1 0 0 0 -118.859 21 'crystal symmetry operation' 21_655 z+1,y,-x 0 0 1 0 1 0 -1 0 0 118.859 0 0 22 'crystal symmetry operation' 22_664 z+1,-y+1,x-1 0 0 1 0 -1 0 1 0 0 118.859 118.859 -118.859 23 'crystal symmetry operation' 23_554 -z,y,x-1 0 0 -1 0 1 0 1 0 0 0 0 -118.859 24 'crystal symmetry operation' 24_565 -z,-y+1,-x 0 0 -1 0 -1 0 -1 0 0 0 118.859 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 23 A GLU 24 1_555 B FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc2 A CD GLU 58 A GLU 60 1_555 B FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc3 A OE1 GLU 58 A GLU 60 1_555 B FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc4 A OE2 GLU 58 A GLU 60 1_555 B FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc5 A ND1 HIS 61 A HIS 63 1_555 B FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6KH1 _atom_sites.fract_transf_matrix[1][1] 0.008413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 201 1 FE FE . C 3 NI A 1 202 1 NI NI . D 4 HOH A 1 301 1 HOH HOH . D 4 HOH A 2 302 2 HOH HOH . D 4 HOH A 3 303 10 HOH HOH . D 4 HOH A 4 304 36 HOH HOH . D 4 HOH A 5 305 21 HOH HOH . D 4 HOH A 6 306 69 HOH HOH . D 4 HOH A 7 307 7 HOH HOH . D 4 HOH A 8 308 58 HOH HOH . D 4 HOH A 9 309 4 HOH HOH . D 4 HOH A 10 310 60 HOH HOH . D 4 HOH A 11 311 9 HOH HOH . D 4 HOH A 12 312 6 HOH HOH . D 4 HOH A 13 313 19 HOH HOH . D 4 HOH A 14 314 16 HOH HOH . D 4 HOH A 15 315 22 HOH HOH . D 4 HOH A 16 316 53 HOH HOH . D 4 HOH A 17 317 79 HOH HOH . D 4 HOH A 18 318 12 HOH HOH . D 4 HOH A 19 319 43 HOH HOH . D 4 HOH A 20 320 38 HOH HOH . D 4 HOH A 21 321 20 HOH HOH . D 4 HOH A 22 322 31 HOH HOH . D 4 HOH A 23 323 14 HOH HOH . D 4 HOH A 24 324 63 HOH HOH . D 4 HOH A 25 325 24 HOH HOH . D 4 HOH A 26 326 5 HOH HOH . D 4 HOH A 27 327 26 HOH HOH . D 4 HOH A 28 328 46 HOH HOH . D 4 HOH A 29 329 47 HOH HOH . D 4 HOH A 30 330 32 HOH HOH . D 4 HOH A 31 331 75 HOH HOH . D 4 HOH A 32 332 30 HOH HOH . D 4 HOH A 33 333 34 HOH HOH . D 4 HOH A 34 334 91 HOH HOH . D 4 HOH A 35 335 33 HOH HOH . D 4 HOH A 36 336 52 HOH HOH . D 4 HOH A 37 337 61 HOH HOH . D 4 HOH A 38 338 13 HOH HOH . D 4 HOH A 39 339 27 HOH HOH . D 4 HOH A 40 340 3 HOH HOH . D 4 HOH A 41 341 84 HOH HOH . D 4 HOH A 42 342 64 HOH HOH . D 4 HOH A 43 343 42 HOH HOH . D 4 HOH A 44 344 11 HOH HOH . D 4 HOH A 45 345 41 HOH HOH . D 4 HOH A 46 346 66 HOH HOH . D 4 HOH A 47 347 37 HOH HOH . D 4 HOH A 48 348 72 HOH HOH . D 4 HOH A 49 349 57 HOH HOH . D 4 HOH A 50 350 8 HOH HOH . D 4 HOH A 51 351 18 HOH HOH . D 4 HOH A 52 352 23 HOH HOH . D 4 HOH A 53 353 44 HOH HOH . D 4 HOH A 54 354 67 HOH HOH . D 4 HOH A 55 355 39 HOH HOH . D 4 HOH A 56 356 45 HOH HOH . D 4 HOH A 57 357 83 HOH HOH . D 4 HOH A 58 358 56 HOH HOH . D 4 HOH A 59 359 78 HOH HOH . D 4 HOH A 60 360 94 HOH HOH . D 4 HOH A 61 361 25 HOH HOH . D 4 HOH A 62 362 88 HOH HOH . D 4 HOH A 63 363 71 HOH HOH . D 4 HOH A 64 364 70 HOH HOH . D 4 HOH A 65 365 40 HOH HOH . D 4 HOH A 66 366 74 HOH HOH . D 4 HOH A 67 367 35 HOH HOH . D 4 HOH A 68 368 80 HOH HOH . D 4 HOH A 69 369 54 HOH HOH . D 4 HOH A 70 370 82 HOH HOH . D 4 HOH A 71 371 59 HOH HOH . D 4 HOH A 72 372 92 HOH HOH . D 4 HOH A 73 373 87 HOH HOH . D 4 HOH A 74 374 73 HOH HOH . D 4 HOH A 75 375 89 HOH HOH . D 4 HOH A 76 376 62 HOH HOH . D 4 HOH A 77 377 90 HOH HOH . D 4 HOH A 78 378 50 HOH HOH . D 4 HOH A 79 379 48 HOH HOH . D 4 HOH A 80 380 96 HOH HOH . D 4 HOH A 81 381 68 HOH HOH . D 4 HOH A 82 382 97 HOH HOH . D 4 HOH A 83 383 76 HOH HOH . D 4 HOH A 84 384 55 HOH HOH . D 4 HOH A 85 385 15 HOH HOH . D 4 HOH A 86 386 86 HOH HOH . D 4 HOH A 87 387 28 HOH HOH . D 4 HOH A 88 388 29 HOH HOH . D 4 HOH A 89 389 93 HOH HOH . D 4 HOH A 90 390 81 HOH HOH . D 4 HOH A 91 391 95 HOH HOH . D 4 HOH A 92 392 51 HOH HOH . D 4 HOH A 93 393 49 HOH HOH . D 4 HOH A 94 394 65 HOH HOH . D 4 HOH A 95 395 85 HOH HOH . D 4 HOH A 96 396 77 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 43.333 _atom_site.Cartn_y 58.158 _atom_site.Cartn_z -0.816 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 103.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #