data_6KHD # _model_server_result.job_id 1-gWqsinF5W8Hzx2oo90vQ _model_server_result.datetime_utc '2024-11-26 22:48:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6khd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1000}' # _entry.id 6KHD # _exptl.entry_id 6KHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.77 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[(3-chlorophenyl)amino]benzo[c][2,6]naphthyridine-8-carboxylic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.38 _cell.angle_gamma 90 _cell.entry_id 6KHD _cell.length_a 56.529 _cell.length_b 115.675 _cell.length_c 90.608 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C19 H12 Cl N3 O2' _chem_comp.formula_weight 349.77 _chem_comp.id 3NG _chem_comp.mon_nstd_flag . _chem_comp.name '5-[(3-chlorophenyl)amino]benzo[c][2,6]naphthyridine-8-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 3NG doub 1 n y C1 N9 3NG sing 2 n y C1 C6 3NG sing 3 n y C2 C3 3NG sing 4 n y C8 C2 3NG sing 5 n y C3 C4 3NG doub 6 n y C3 H3 3NG sing 7 n n C4 C5 3NG sing 8 n y C4 H4 3NG sing 9 n n C5 C6 3NG doub 10 n y C5 C23 3NG sing 11 n n C6 H6 3NG sing 12 n n C14 C7 3NG sing 13 n y C10 C7 3NG sing 14 n y C7 C8 3NG doub 15 n y C8 C13 3NG sing 16 n y C10 N9 3NG doub 17 n y N15 C10 3NG sing 18 n n C14 C11 3NG doub 19 n y C11 N12 3NG sing 20 n y C11 H11 3NG sing 21 n n N12 C13 3NG doub 22 n y C13 H13 3NG sing 23 n n C14 H14 3NG sing 24 n n C16 N15 3NG sing 25 n n N15 HN15 3NG sing 26 n n C21 C16 3NG doub 27 n y C16 C17 3NG sing 28 n y C18 C17 3NG doub 29 n y C17 H17 3NG sing 30 n n C19 C18 3NG sing 31 n y C18 CL22 3NG sing 32 n n C20 C19 3NG doub 33 n y C19 H19 3NG sing 34 n n C20 C21 3NG sing 35 n y C20 H20 3NG sing 36 n n C21 H21 3NG sing 37 n n O24 C23 3NG doub 38 n n C23 O25 3NG sing 39 n n O25 HO25 3NG sing 40 n n # _atom_sites.entry_id 6KHD _atom_sites.fract_transf_matrix[1][1] 0.01769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00324 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008645 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 3NG A 1 1000 1000 3NG 3NG . E 2 3NG B 1 1000 1000 3NG 3NG . F 2 3NG C 1 1000 1000 3NG 3NG . G 3 HOH A 1 1101 17 HOH HOH . G 3 HOH A 2 1102 4 HOH HOH . G 3 HOH A 3 1103 7 HOH HOH . G 3 HOH A 4 1104 10 HOH HOH . G 3 HOH A 5 1105 13 HOH HOH . G 3 HOH A 6 1106 14 HOH HOH . G 3 HOH A 7 1107 8 HOH HOH . G 3 HOH A 8 1108 22 HOH HOH . G 3 HOH A 9 1109 6 HOH HOH . G 3 HOH A 10 1110 9 HOH HOH . H 3 HOH B 1 1101 18 HOH HOH . H 3 HOH B 2 1102 1 HOH HOH . H 3 HOH B 3 1103 11 HOH HOH . H 3 HOH B 4 1104 16 HOH HOH . H 3 HOH B 5 1105 12 HOH HOH . H 3 HOH B 6 1106 3 HOH HOH . H 3 HOH B 7 1107 5 HOH HOH . I 3 HOH C 1 1101 21 HOH HOH . I 3 HOH C 2 1102 15 HOH HOH . I 3 HOH C 3 1103 19 HOH HOH . I 3 HOH C 4 1104 2 HOH HOH . I 3 HOH C 5 1105 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3NG . . . D 2 -10.673 -14.424 99.87 1 74.56 ? C1 3NG 1000 A 1 HETATM 2 C C2 3NG . . . D 2 -10.61 -15.76 100.179 1 75.3 ? C2 3NG 1000 A 1 HETATM 3 C C3 3NG . . . D 2 -10.501 -16.73 99.167 1 75.91 ? C3 3NG 1000 A 1 HETATM 4 C C4 3NG . . . D 2 -10.458 -16.331 97.838 1 75.35 ? C4 3NG 1000 A 1 HETATM 5 C C5 3NG . . . D 2 -10.519 -14.978 97.528 1 76.61 ? C5 3NG 1000 A 1 HETATM 6 C C6 3NG . . . D 2 -10.626 -14.026 98.527 1 78.33 ? C6 3NG 1000 A 1 HETATM 7 C C7 3NG . . . D 2 -10.756 -15.224 102.491 1 81.06 ? C7 3NG 1000 A 1 HETATM 8 C C8 3NG . . . D 2 -10.654 -16.15 101.529 1 78.21 ? C8 3NG 1000 A 1 HETATM 9 N N9 3NG . . . D 2 -10.777 -13.468 100.869 1 76.53 ? N9 3NG 1000 A 1 HETATM 10 C C10 3NG . . . D 2 -10.827 -13.863 102.175 1 79.29 ? C10 3NG 1000 A 1 HETATM 11 C C11 3NG . . . D 2 -10.734 -16.894 104.184 1 84.01 ? C11 3NG 1000 A 1 HETATM 12 N N12 3NG . . . D 2 -10.633 -17.834 103.209 1 81.12 ? N12 3NG 1000 A 1 HETATM 13 C C13 3NG . . . D 2 -10.587 -17.498 101.888 1 77.72 ? C13 3NG 1000 A 1 HETATM 14 C C14 3NG . . . D 2 -10.796 -15.569 103.83 1 83.04 ? C14 3NG 1000 A 1 HETATM 15 N N15 3NG . . . D 2 -10.91 -12.619 102.846 1 82.81 ? N15 3NG 1000 A 1 HETATM 16 C C16 3NG . . . D 2 -11.281 -11.303 102.474 1 84.13 ? C16 3NG 1000 A 1 HETATM 17 C C17 3NG . . . D 2 -12.101 -10.962 101.407 1 87.3 ? C17 3NG 1000 A 1 HETATM 18 C C18 3NG . . . D 2 -12.401 -9.627 101.174 1 97.66 ? C18 3NG 1000 A 1 HETATM 19 C C19 3NG . . . D 2 -11.905 -8.637 101.999 1 92.11 ? C19 3NG 1000 A 1 HETATM 20 C C20 3NG . . . D 2 -11.098 -8.977 103.069 1 91.26 ? C20 3NG 1000 A 1 HETATM 21 C C21 3NG . . . D 2 -10.794 -10.306 103.303 1 87.23 ? C21 3NG 1000 A 1 HETATM 22 CL CL22 3NG . . . D 2 -13.409 -9.15 99.846 1 116.66 ? CL22 3NG 1000 A 1 HETATM 23 C C23 3NG . . . D 2 -10.467 -14.684 96.051 1 79.73 ? C23 3NG 1000 A 1 HETATM 24 O O24 3NG . . . D 2 -10.087 -15.562 95.245 1 79.85 ? O24 3NG 1000 A 1 HETATM 25 O O25 3NG . . . D 2 -10.807 -13.548 95.634 1 74.88 ? O25 3NG 1000 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 25 #