data_6KHI
#
_model_server_result.job_id            JBcaGTI0tqqqlnQ--D-WFQ 
_model_server_result.datetime_utc      '2024-11-06 23:37:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6khi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":601}' 
#
_entry.id    6KHI 
#
_exptl.entry_id    6KHI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              722.97 
_entity.id                          22 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 22 W N N 
? 22 Y N N 
? 22 DA N N 
? 22 FA N N 
? 22 GA N N 
? 22 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 I SG CYS 63 I CYS 63 1_555 JA FE3 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc2 I SG CYS 66 I CYS 66 1_555 JA FE1 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc3 I SG CYS 69 I CYS 69 1_555 JA FE2 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc4 I SG CYS 73 I CYS 73 1_555 IA FE3 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc5 I SG CYS 103 I CYS 103 1_555 IA FE1 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc6 I SG CYS 106 I CYS 106 1_555 IA FE4 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc7 I SG CYS 109 I CYS 109 1_555 IA FE2 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc8 I SG CYS 113 I CYS 113 1_555 JA FE4 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc9 K SG CYS 52 K CYS 52 1_555 KA FE3 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc10 K SG CYS 53 K CYS 53 1_555 KA FE2 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc11 K SG CYS 117 K CYS 117 1_555 KA FE4 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc12 K SG CYS 148 K CYS 148 1_555 KA FE1 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc13 T SG CYS 41 1 CYS 41 1_555 MA FE1 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc14 T SG CYS 46 1 CYS 46 1_555 MA FE1 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc15 T SG CYS 49 1 CYS 49 1_555 MA FE2 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc16 T SG CYS 79 1 CYS 79 1_555 MA FE2 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
#
_chem_comp.formula           'C38 H75 O10 P' 
_chem_comp.formula_weight    722.97 
_chem_comp.id                LHG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 LHG sing 456 n n 
O1 HO1 LHG sing 457 n n 
C1 C2 LHG sing 458 n n 
C1 HC11 LHG sing 459 n n 
C1 HC12 LHG sing 460 n n 
C2 O2 LHG sing 461 n n 
C2 C3 LHG sing 462 n n 
C2 HC2 LHG sing 463 n n 
O2 H02 LHG sing 464 n n 
C3 O3 LHG sing 465 n n 
C3 HC31 LHG sing 466 n n 
C3 HC32 LHG sing 467 n n 
O3 P LHG sing 468 n n 
P O4 LHG sing 469 n n 
P O5 LHG doub 470 n n 
P O6 LHG sing 471 n n 
O4 HO4 LHG sing 472 n n 
O6 C4 LHG sing 473 n n 
C4 C5 LHG sing 474 n n 
C4 HC41 LHG sing 475 n n 
C4 HC42 LHG sing 476 n n 
C5 C6 LHG sing 477 n n 
C5 O7 LHG sing 478 n n 
C5 HC5 LHG sing 479 n n 
C6 O8 LHG sing 480 n n 
C6 HC61 LHG sing 481 n n 
C6 HC62 LHG sing 482 n n 
O7 C7 LHG sing 483 n n 
C7 O9 LHG doub 484 n n 
C7 C8 LHG sing 485 n n 
C8 C9 LHG sing 486 n n 
C8 HC81 LHG sing 487 n n 
C8 HC82 LHG sing 488 n n 
C9 C10 LHG sing 489 n n 
C9 HC91 LHG sing 490 n n 
C9 HC92 LHG sing 491 n n 
C10 C11 LHG sing 492 n n 
C10 H101 LHG sing 493 n n 
C10 H102 LHG sing 494 n n 
O8 C23 LHG sing 495 n n 
C23 O10 LHG doub 496 n n 
C23 C24 LHG sing 497 n n 
C24 C25 LHG sing 498 n n 
C24 H241 LHG sing 499 n n 
C24 H242 LHG sing 500 n n 
C11 C12 LHG sing 501 n n 
C11 H111 LHG sing 502 n n 
C11 H112 LHG sing 503 n n 
C12 C13 LHG sing 504 n n 
C12 H121 LHG sing 505 n n 
C12 H122 LHG sing 506 n n 
C13 C14 LHG sing 507 n n 
C13 H131 LHG sing 508 n n 
C13 H132 LHG sing 509 n n 
C14 C15 LHG sing 510 n n 
C14 H141 LHG sing 511 n n 
C14 H142 LHG sing 512 n n 
C15 C16 LHG sing 513 n n 
C15 H151 LHG sing 514 n n 
C15 H152 LHG sing 515 n n 
C16 C17 LHG sing 516 n n 
C16 H161 LHG sing 517 n n 
C16 H162 LHG sing 518 n n 
C17 C18 LHG sing 519 n n 
C17 H171 LHG sing 520 n n 
C17 H172 LHG sing 521 n n 
C18 C19 LHG sing 522 n n 
C18 H181 LHG sing 523 n n 
C18 H182 LHG sing 524 n n 
C19 C20 LHG sing 525 n n 
C19 H191 LHG sing 526 n n 
C19 H192 LHG sing 527 n n 
C20 C21 LHG sing 528 n n 
C20 H201 LHG sing 529 n n 
C20 H202 LHG sing 530 n n 
C21 C22 LHG sing 531 n n 
C21 H211 LHG sing 532 n n 
C21 H212 LHG sing 533 n n 
C22 H221 LHG sing 534 n n 
C22 H222 LHG sing 535 n n 
C22 H223 LHG sing 536 n n 
C25 C26 LHG sing 537 n n 
C25 H251 LHG sing 538 n n 
C25 H252 LHG sing 539 n n 
C26 C27 LHG sing 540 n n 
C26 H261 LHG sing 541 n n 
C26 H262 LHG sing 542 n n 
C27 C28 LHG sing 543 n n 
C27 H271 LHG sing 544 n n 
C27 H272 LHG sing 545 n n 
C28 C29 LHG sing 546 n n 
C28 H281 LHG sing 547 n n 
C28 H282 LHG sing 548 n n 
C29 C30 LHG sing 549 n n 
C29 H291 LHG sing 550 n n 
C29 H292 LHG sing 551 n n 
C30 C31 LHG sing 552 n n 
C30 H301 LHG sing 553 n n 
C30 H302 LHG sing 554 n n 
C31 C32 LHG sing 555 n n 
C31 H311 LHG sing 556 n n 
C31 H312 LHG sing 557 n n 
C32 C33 LHG sing 558 n n 
C32 H321 LHG sing 559 n n 
C32 H322 LHG sing 560 n n 
C33 C34 LHG sing 561 n n 
C33 H331 LHG sing 562 n n 
C33 H332 LHG sing 563 n n 
C34 C35 LHG sing 564 n n 
C34 H341 LHG sing 565 n n 
C34 H342 LHG sing 566 n n 
C35 C36 LHG sing 567 n n 
C35 H351 LHG sing 568 n n 
C35 H352 LHG sing 569 n n 
C36 C37 LHG sing 570 n n 
C36 H361 LHG sing 571 n n 
C36 H362 LHG sing 572 n n 
C37 C38 LHG sing 573 n n 
C37 H371 LHG sing 574 n n 
C37 H372 LHG sing 575 n n 
C38 H381 LHG sing 576 n n 
C38 H382 LHG sing 577 n n 
C38 H383 LHG sing 578 n n 
#
_atom_sites.entry_id                     6KHI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 21 DGD A 1 401 401 DGD DGD . 
V 21 DGD A 1 402 402 DGD DGD . 
W 22 LHG B 1 601 502 LHG LHG . 
X 23 SQD C 1 201 201 SQD SQD . 
Y 22 LHG C 1 202 202 LHG LHG . 
Z 23 SQD D 1 601 501 SQD SQD . 
AA 24 BCR D 1 602 601 BCR BCR . 
BA 24 BCR D 1 603 602 BCR BCR . 
CA 25 LMG F 1 701 701 LMG LMG . 
DA 22 LHG F 1 702 702 LHG LHG . 
EA 25 LMG F 1 703 703 LMG LMG . 
FA 22 LHG F 1 704 704 LHG LHG . 
GA 22 LHG F 1 705 705 LHG LHG . 
HA 22 LHG I 1 201 404 LHG LHG . 
IA 26 SF4 I 1 202 201 SF4 SF4 . 
JA 26 SF4 I 1 203 202 SF4 SF4 . 
KA 26 SF4 K 1 301 301 SF4 SF4 . 
LA 23 SQD L 1 101 101 SQD SQD . 
MA 27 FES 1 1 101 101 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 LHG . . . W 22 13.394 -3.342 -19.152 1 49.68 ? O1 LHG 601 B 1 
HETATM 2 C C1 LHG . . . W 22 13.665 -2.052 -18.679 1 49.68 ? C1 LHG 601 B 1 
HETATM 3 C C2 LHG . . . W 22 14.021 -1.147 -19.854 1 49.68 ? C2 LHG 601 B 1 
HETATM 4 O O2 LHG . . . W 22 12.926 -1.052 -20.719 1 49.68 ? O2 LHG 601 B 1 
HETATM 5 C C3 LHG . . . W 22 15.214 -1.744 -20.594 1 49.68 ? C3 LHG 601 B 1 
HETATM 6 O O3 LHG . . . W 22 16.331 -1.677 -19.758 1 49.68 ? O3 LHG 601 B 1 
HETATM 7 P P LHG . . . W 22 17.561 -2.75 -19.967 1 49.68 ? P LHG 601 B 1 
HETATM 8 O O4 LHG . . . W 22 17.841 -2.92 -21.437 1 49.68 ? O4 LHG 601 B 1 
HETATM 9 O O5 LHG . . . W 22 17.185 -4.085 -19.381 1 49.68 ? O5 LHG 601 B 1 
HETATM 10 O O6 LHG . . . W 22 18.892 -2.166 -19.195 1 49.68 ? O6 LHG 601 B 1 
HETATM 11 C C4 LHG . . . W 22 18.831 -0.873 -18.666 1 49.68 ? C4 LHG 601 B 1 
HETATM 12 C C5 LHG . . . W 22 20.034 -0.634 -17.758 1 49.68 ? C5 LHG 601 B 1 
HETATM 13 C C6 LHG . . . W 22 19.595 0.219 -16.572 1 49.68 ? C6 LHG 601 B 1 
HETATM 14 O O7 LHG . . . W 22 20.521 -1.861 -17.299 1 49.68 ? O7 LHG 601 B 1 
HETATM 15 C C7 LHG . . . W 22 21.915 -1.986 -17.328 1 49.68 ? C7 LHG 601 B 1 
HETATM 16 O O9 LHG . . . W 22 22.555 -1.369 -18.109 1 49.68 ? O9 LHG 601 B 1 
HETATM 17 C C8 LHG . . . W 22 22.618 -2.917 -16.344 1 49.68 ? C8 LHG 601 B 1 
HETATM 18 C C9 LHG . . . W 22 23.908 -2.255 -15.867 1 49.68 ? C9 LHG 601 B 1 
HETATM 19 C C10 LHG . . . W 22 24.226 -2.722 -14.451 1 49.68 ? C10 LHG 601 B 1 
HETATM 20 O O8 LHG . . . W 22 20.662 0.383 -15.685 1 49.68 ? O8 LHG 601 B 1 
HETATM 21 C C23 LHG . . . W 22 20.35 0.032 -14.367 1 49.68 ? C23 LHG 601 B 1 
HETATM 22 O O10 LHG . . . W 22 20.444 0.835 -13.505 1 49.68 ? O10 LHG 601 B 1 
HETATM 23 C C24 LHG . . . W 22 19.881 -1.385 -14.048 1 49.68 ? C24 LHG 601 B 1 
HETATM 24 C C11 LHG . . . W 22 25.355 -1.862 -13.892 1 49.68 ? C11 LHG 601 B 1 
HETATM 25 C C12 LHG . . . W 22 25.656 -2.264 -12.45 1 49.68 ? C12 LHG 601 B 1 
HETATM 26 C C13 LHG . . . W 22 26.97 -1.615 -12.027 1 49.68 ? C13 LHG 601 B 1 
HETATM 27 C C14 LHG . . . W 22 27.641 -2.449 -10.941 1 49.68 ? C14 LHG 601 B 1 
HETATM 28 C C15 LHG . . . W 22 28.907 -1.73 -10.484 1 49.68 ? C15 LHG 601 B 1 
HETATM 29 C C16 LHG . . . W 22 29.565 -2.509 -9.349 1 49.68 ? C16 LHG 601 B 1 
HETATM 30 C C17 LHG . . . W 22 30.989 -2.875 -9.758 1 49.68 ? C17 LHG 601 B 1 
HETATM 31 C C18 LHG . . . W 22 31.962 -2.46 -8.659 1 49.68 ? C18 LHG 601 B 1 
HETATM 32 C C19 LHG . . . W 22 33.388 -2.74 -9.12 1 49.68 ? C19 LHG 601 B 1 
HETATM 33 C C20 LHG . . . W 22 34.369 -2.081 -8.155 1 49.68 ? C20 LHG 601 B 1 
HETATM 34 C C25 LHG . . . W 22 20.281 -1.788 -12.631 1 49.68 ? C25 LHG 601 B 1 
HETATM 35 C C26 LHG . . . W 22 20.8 -3.224 -12.658 1 49.68 ? C26 LHG 601 B 1 
HETATM 36 C C27 LHG . . . W 22 20.292 -3.99 -11.439 1 49.68 ? C27 LHG 601 B 1 
HETATM 37 C C28 LHG . . . W 22 21.426 -4.158 -10.431 1 49.68 ? C28 LHG 601 B 1 
HETATM 38 C C29 LHG . . . W 22 22.24 -5.407 -10.758 1 49.68 ? C29 LHG 601 B 1 
HETATM 39 C C30 LHG . . . W 22 23.701 -5.152 -10.4 1 49.68 ? C30 LHG 601 B 1 
HETATM 40 C C31 LHG . . . W 22 24.475 -6.467 -10.4 1 49.68 ? C31 LHG 601 B 1 
HETATM 41 C C32 LHG . . . W 22 25.966 -6.163 -10.281 1 49.68 ? C32 LHG 601 B 1 
HETATM 42 C C33 LHG . . . W 22 26.657 -7.266 -9.484 1 49.68 ? C33 LHG 601 B 1 
HETATM 43 C C34 LHG . . . W 22 28.111 -6.872 -9.243 1 49.68 ? C34 LHG 601 B 1 
HETATM 44 C C35 LHG . . . W 22 28.972 -7.371 -10.4 1 49.68 ? C35 LHG 601 B 1 
HETATM 45 C C36 LHG . . . W 22 30.118 -6.394 -10.639 1 49.68 ? C36 LHG 601 B 1 
HETATM 46 C C37 LHG . . . W 22 31.26 -7.11 -11.354 1 49.68 ? C37 LHG 601 B 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           370 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           46 
#