data_6KHI # _model_server_result.job_id r4fgBGgkE9r-3SxXAOBI6w _model_server_result.datetime_utc '2024-11-23 13:12:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6khi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":601}' # _entry.id 6KHI # _exptl.entry_id 6KHI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 795.116 _entity.id 23 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 23 X N N ? 23 Z N N ? 23 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I SG CYS 63 I CYS 63 1_555 JA FE3 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 I SG CYS 66 I CYS 66 1_555 JA FE1 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc3 I SG CYS 69 I CYS 69 1_555 JA FE2 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc4 I SG CYS 73 I CYS 73 1_555 IA FE3 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 I SG CYS 103 I CYS 103 1_555 IA FE1 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc6 I SG CYS 106 I CYS 106 1_555 IA FE4 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc7 I SG CYS 109 I CYS 109 1_555 IA FE2 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc8 I SG CYS 113 I CYS 113 1_555 JA FE4 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc9 K SG CYS 52 K CYS 52 1_555 KA FE3 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc10 K SG CYS 53 K CYS 53 1_555 KA FE2 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc11 K SG CYS 117 K CYS 117 1_555 KA FE4 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc12 K SG CYS 148 K CYS 148 1_555 KA FE1 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc13 T SG CYS 41 1 CYS 41 1_555 MA FE1 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc14 T SG CYS 46 1 CYS 46 1_555 MA FE1 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc15 T SG CYS 49 1 CYS 49 1_555 MA FE2 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc16 T SG CYS 79 1 CYS 79 1_555 MA FE2 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? # _chem_comp.formula 'C41 H78 O12 S' _chem_comp.formula_weight 795.116 _chem_comp.id SQD _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SULFOQUINOVOSYLDIACYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C44 SQD sing 828 n n O6 C1 SQD sing 829 n n C44 C45 SQD sing 830 n n C44 H441 SQD sing 831 n n C44 H442 SQD sing 832 n n C45 C46 SQD sing 833 n n C45 O47 SQD sing 834 n n C45 H45 SQD sing 835 n n C46 O48 SQD sing 836 n n C46 H461 SQD sing 837 n n C46 H462 SQD sing 838 n n O47 C7 SQD sing 839 n n C7 O49 SQD doub 840 n n C7 C8 SQD sing 841 n n C8 C9 SQD sing 842 n n C8 H81 SQD sing 843 n n C8 H82 SQD sing 844 n n C9 C10 SQD sing 845 n n C9 H91 SQD sing 846 n n C9 H92 SQD sing 847 n n C10 C11 SQD sing 848 n n C10 H101 SQD sing 849 n n C10 H102 SQD sing 850 n n C11 C12 SQD sing 851 n n C11 H111 SQD sing 852 n n C11 H112 SQD sing 853 n n C12 C13 SQD sing 854 n n C12 H121 SQD sing 855 n n C12 H122 SQD sing 856 n n C13 C14 SQD sing 857 n n C13 H131 SQD sing 858 n n C13 H132 SQD sing 859 n n C14 C15 SQD sing 860 n n C14 H141 SQD sing 861 n n C14 H142 SQD sing 862 n n C15 C16 SQD sing 863 n n C15 H151 SQD sing 864 n n C15 H152 SQD sing 865 n n C16 C17 SQD sing 866 n n C16 H161 SQD sing 867 n n C16 H162 SQD sing 868 n n C17 C18 SQD sing 869 n n C17 H171 SQD sing 870 n n C17 H172 SQD sing 871 n n C18 C19 SQD sing 872 n n C18 H181 SQD sing 873 n n C18 H182 SQD sing 874 n n C19 C20 SQD sing 875 n n C19 H191 SQD sing 876 n n C19 H192 SQD sing 877 n n C20 C21 SQD sing 878 n n C20 H201 SQD sing 879 n n C20 H202 SQD sing 880 n n C21 C22 SQD sing 881 n n C21 H211 SQD sing 882 n n C21 H212 SQD sing 883 n n C22 H221 SQD sing 884 n n C22 H222 SQD sing 885 n n C22 H223 SQD sing 886 n n O48 C23 SQD sing 887 n n C23 O10 SQD doub 888 n n C23 C24 SQD sing 889 n n C24 C25 SQD sing 890 n n C24 H241 SQD sing 891 n n C24 H242 SQD sing 892 n n C25 C26 SQD sing 893 n n C25 H251 SQD sing 894 n n C25 H252 SQD sing 895 n n C26 C27 SQD sing 896 n n C26 H261 SQD sing 897 n n C26 H262 SQD sing 898 n n C27 C28 SQD sing 899 n n C27 H271 SQD sing 900 n n C27 H272 SQD sing 901 n n C28 C29 SQD sing 902 n n C28 H281 SQD sing 903 n n C28 H282 SQD sing 904 n n C29 C30 SQD sing 905 n n C29 H291 SQD sing 906 n n C29 H292 SQD sing 907 n n C30 C31 SQD sing 908 n n C30 H301 SQD sing 909 n n C30 H302 SQD sing 910 n n C31 C32 SQD sing 911 n n C31 H311 SQD sing 912 n n C31 H312 SQD sing 913 n n C32 C33 SQD sing 914 n n C32 H321 SQD sing 915 n n C32 H322 SQD sing 916 n n C33 C34 SQD sing 917 n n C33 H331 SQD sing 918 n n C33 H332 SQD sing 919 n n C34 C35 SQD sing 920 n n C34 H341 SQD sing 921 n n C34 H342 SQD sing 922 n n C35 C36 SQD sing 923 n n C35 H351 SQD sing 924 n n C35 H352 SQD sing 925 n n C36 C37 SQD sing 926 n n C36 H361 SQD sing 927 n n C36 H362 SQD sing 928 n n C37 C38 SQD sing 929 n n C37 H371 SQD sing 930 n n C37 H372 SQD sing 931 n n C38 H381 SQD sing 932 n n C38 H382 SQD sing 933 n n C38 H383 SQD sing 934 n n C1 C2 SQD sing 935 n n C1 O5 SQD sing 936 n n C1 H1 SQD sing 937 n n C2 O2 SQD sing 938 n n C2 C3 SQD sing 939 n n C2 H2 SQD sing 940 n n O2 HO2 SQD sing 941 n n C3 O3 SQD sing 942 n n C3 C4 SQD sing 943 n n C3 H3 SQD sing 944 n n O3 HO3 SQD sing 945 n n C4 O4 SQD sing 946 n n C4 C5 SQD sing 947 n n C4 H4 SQD sing 948 n n O4 HO4 SQD sing 949 n n C5 C6 SQD sing 950 n n C5 O5 SQD sing 951 n n C5 H5 SQD sing 952 n n C6 S SQD sing 953 n n C6 H61 SQD sing 954 n n C6 H62 SQD sing 955 n n S O7 SQD doub 956 n n S O8 SQD sing 957 n n S O9 SQD doub 958 n n O8 HO8 SQD sing 959 n n # _atom_sites.entry_id 6KHI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 21 DGD A 1 401 401 DGD DGD . V 21 DGD A 1 402 402 DGD DGD . W 22 LHG B 1 601 502 LHG LHG . X 23 SQD C 1 201 201 SQD SQD . Y 22 LHG C 1 202 202 LHG LHG . Z 23 SQD D 1 601 501 SQD SQD . AA 24 BCR D 1 602 601 BCR BCR . BA 24 BCR D 1 603 602 BCR BCR . CA 25 LMG F 1 701 701 LMG LMG . DA 22 LHG F 1 702 702 LHG LHG . EA 25 LMG F 1 703 703 LMG LMG . FA 22 LHG F 1 704 704 LHG LHG . GA 22 LHG F 1 705 705 LHG LHG . HA 22 LHG I 1 201 404 LHG LHG . IA 26 SF4 I 1 202 201 SF4 SF4 . JA 26 SF4 I 1 203 202 SF4 SF4 . KA 26 SF4 K 1 301 301 SF4 SF4 . LA 23 SQD L 1 101 101 SQD SQD . MA 27 FES 1 1 101 101 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 SQD . . . Z 23 12.021 -21.525 -0.66 1 52.93 ? O6 SQD 601 D 1 HETATM 2 C C44 SQD . . . Z 23 12.824 -22.408 -1.453 1 52.93 ? C44 SQD 601 D 1 HETATM 3 C C45 SQD . . . Z 23 14.285 -22.405 -0.971 1 52.93 ? C45 SQD 601 D 1 HETATM 4 C C46 SQD . . . Z 23 14.56 -21.169 -0.103 1 52.93 ? C46 SQD 601 D 1 HETATM 5 O O47 SQD . . . Z 23 14.518 -23.545 -0.207 1 52.93 ? O47 SQD 601 D 1 HETATM 6 C C7 SQD . . . Z 23 15.776 -24.138 -0.42 1 52.93 ? C7 SQD 601 D 1 HETATM 7 O O49 SQD . . . Z 23 15.949 -24.82 -1.376 1 52.93 ? O49 SQD 601 D 1 HETATM 8 C C8 SQD . . . Z 23 16.927 -23.922 0.582 1 52.93 ? C8 SQD 601 D 1 HETATM 9 C C9 SQD . . . Z 23 18.291 -24.299 -0.016 1 52.93 ? C9 SQD 601 D 1 HETATM 10 C C10 SQD . . . Z 23 19.462 -23.752 0.82 1 52.93 ? C10 SQD 601 D 1 HETATM 11 C C11 SQD . . . Z 23 20.646 -24.739 0.869 1 52.93 ? C11 SQD 601 D 1 HETATM 12 C C12 SQD . . . Z 23 21.042 -25.091 2.319 1 52.93 ? C12 SQD 601 D 1 HETATM 13 C C13 SQD . . . Z 23 22.299 -25.983 2.386 1 52.93 ? C13 SQD 601 D 1 HETATM 14 C C14 SQD . . . Z 23 21.945 -27.485 2.452 1 52.93 ? C14 SQD 601 D 1 HETATM 15 C C15 SQD . . . Z 23 23.041 -28.325 3.157 1 52.93 ? C15 SQD 601 D 1 HETATM 16 C C16 SQD . . . Z 23 22.88 -29.85 2.908 1 52.93 ? C16 SQD 601 D 1 HETATM 17 C C17 SQD . . . Z 23 24.076 -30.454 2.118 1 52.93 ? C17 SQD 601 D 1 HETATM 18 C C18 SQD . . . Z 23 24.164 -32.006 2.208 1 52.93 ? C18 SQD 601 D 1 HETATM 19 C C19 SQD . . . Z 23 22.778 -32.691 2.076 1 52.93 ? C19 SQD 601 D 1 HETATM 20 C C20 SQD . . . Z 23 22.862 -34.191 1.687 1 52.93 ? C20 SQD 601 D 1 HETATM 21 C C21 SQD . . . Z 23 23.296 -35.109 2.857 1 52.93 ? C21 SQD 601 D 1 HETATM 22 C C22 SQD . . . Z 23 22.887 -36.582 2.624 1 52.93 ? C22 SQD 601 D 1 HETATM 23 O O48 SQD . . . Z 23 14.56 -21.616 1.238 1 52.93 ? O48 SQD 601 D 1 HETATM 24 C C23 SQD . . . Z 23 13.821 -20.776 2.103 1 52.93 ? C23 SQD 601 D 1 HETATM 25 O O10 SQD . . . Z 23 12.644 -20.884 2.178 1 52.93 ? O10 SQD 601 D 1 HETATM 26 C C24 SQD . . . Z 23 14.572 -19.722 2.947 1 52.93 ? C24 SQD 601 D 1 HETATM 27 C C25 SQD . . . Z 23 15.965 -20.235 3.398 1 52.93 ? C25 SQD 601 D 1 HETATM 28 C C26 SQD . . . Z 23 16.967 -19.073 3.601 1 52.93 ? C26 SQD 601 D 1 HETATM 29 C C27 SQD . . . Z 23 17.813 -19.251 4.887 1 52.93 ? C27 SQD 601 D 1 HETATM 30 C C28 SQD . . . Z 23 19.296 -19.574 4.558 1 52.93 ? C28 SQD 601 D 1 HETATM 31 C C29 SQD . . . Z 23 19.572 -21.107 4.577 1 52.93 ? C29 SQD 601 D 1 HETATM 32 C C30 SQD . . . Z 23 21.004 -21.443 4.059 1 52.93 ? C30 SQD 601 D 1 HETATM 33 C C31 SQD . . . Z 23 21.928 -21.945 5.208 1 52.93 ? C31 SQD 601 D 1 HETATM 34 C C32 SQD . . . Z 23 23.22 -22.616 4.656 1 52.93 ? C32 SQD 601 D 1 HETATM 35 C C33 SQD . . . Z 23 23.768 -23.701 5.619 1 52.93 ? C33 SQD 601 D 1 HETATM 36 C C34 SQD . . . Z 23 25.246 -24.074 5.298 1 52.93 ? C34 SQD 601 D 1 HETATM 37 C C35 SQD . . . Z 23 25.414 -24.517 3.817 1 52.93 ? C35 SQD 601 D 1 HETATM 38 C C36 SQD . . . Z 23 26.493 -25.621 3.648 1 52.93 ? C36 SQD 601 D 1 HETATM 39 C C37 SQD . . . Z 23 26.425 -26.288 2.25 1 52.93 ? C37 SQD 601 D 1 HETATM 40 C C38 SQD . . . Z 23 27.177 -27.631 2.208 1 52.93 ? C38 SQD 601 D 1 HETATM 41 C C1 SQD . . . Z 23 11.123 -20.708 -1.386 1 52.93 ? C1 SQD 601 D 1 HETATM 42 C C2 SQD . . . Z 23 9.733 -21.254 -1.293 1 52.93 ? C2 SQD 601 D 1 HETATM 43 O O2 SQD . . . Z 23 9.707 -22.445 -0.409 1 52.93 ? O2 SQD 601 D 1 HETATM 44 C C3 SQD . . . Z 23 9.187 -21.622 -2.599 1 52.93 ? C3 SQD 601 D 1 HETATM 45 O O3 SQD . . . Z 23 7.78 -22.039 -2.417 1 52.93 ? O3 SQD 601 D 1 HETATM 46 C C4 SQD . . . Z 23 9.222 -20.513 -3.593 1 52.93 ? C4 SQD 601 D 1 HETATM 47 O O4 SQD . . . Z 23 8.819 -21.033 -4.862 1 52.93 ? O4 SQD 601 D 1 HETATM 48 C C5 SQD . . . Z 23 10.632 -19.869 -3.747 1 52.93 ? C5 SQD 601 D 1 HETATM 49 C C6 SQD . . . Z 23 10.584 -18.479 -3.448 1 52.93 ? C6 SQD 601 D 1 HETATM 50 O O5 SQD . . . Z 23 11.603 -20.576 -2.781 1 52.93 ? O5 SQD 601 D 1 HETATM 51 S S SQD . . . Z 23 11.946 -17.606 -3.487 1 52.93 ? S SQD 601 D 1 HETATM 52 O O7 SQD . . . Z 23 11.365 -17.405 -2.155 1 52.93 ? O7 SQD 601 D 1 HETATM 53 O O8 SQD . . . Z 23 13.117 -18.515 -4.229 1 52.93 ? O8 SQD 601 D 1 HETATM 54 O O9 SQD . . . Z 23 12.581 -16.143 -3.026 1 52.93 ? O9 SQD 601 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 54 #