data_6KHI # _model_server_result.job_id oLOPOtfSiXb3nEYdzvzX3w _model_server_result.datetime_utc '2024-11-06 23:39:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6khi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":701}' # _entry.id 6KHI # _exptl.entry_id 6KHI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.158 _entity.id 25 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 25 CA N N ? 25 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I SG CYS 63 I CYS 63 1_555 JA FE3 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 I SG CYS 66 I CYS 66 1_555 JA FE1 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc3 I SG CYS 69 I CYS 69 1_555 JA FE2 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc4 I SG CYS 73 I CYS 73 1_555 IA FE3 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 I SG CYS 103 I CYS 103 1_555 IA FE1 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc6 I SG CYS 106 I CYS 106 1_555 IA FE4 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc7 I SG CYS 109 I CYS 109 1_555 IA FE2 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc8 I SG CYS 113 I CYS 113 1_555 JA FE4 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc9 K SG CYS 52 K CYS 52 1_555 KA FE3 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc10 K SG CYS 53 K CYS 53 1_555 KA FE2 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc11 K SG CYS 117 K CYS 117 1_555 KA FE4 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc12 K SG CYS 148 K CYS 148 1_555 KA FE1 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc13 T SG CYS 41 1 CYS 41 1_555 MA FE1 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc14 T SG CYS 46 1 CYS 46 1_555 MA FE1 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc15 T SG CYS 49 1 CYS 49 1_555 MA FE2 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc16 T SG CYS 79 1 CYS 79 1_555 MA FE2 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? # _chem_comp.formula 'C45 H86 O10' _chem_comp.formula_weight 787.158 _chem_comp.id LMG _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 LMG sing 579 n n C1 C2 LMG sing 580 n n C1 O6 LMG sing 581 n n C1 HC1 LMG sing 582 n n O1 C7 LMG sing 583 n n C2 O2 LMG sing 584 n n C2 C3 LMG sing 585 n n C2 HC2 LMG sing 586 n n O2 HO2 LMG sing 587 n n C3 O3 LMG sing 588 n n C3 C4 LMG sing 589 n n C3 HC3 LMG sing 590 n n O3 HO3 LMG sing 591 n n C4 O4 LMG sing 592 n n C4 C5 LMG sing 593 n n C4 HC4 LMG sing 594 n n O4 HO4 LMG sing 595 n n C5 C6 LMG sing 596 n n C5 O6 LMG sing 597 n n C5 HC5 LMG sing 598 n n O5 C6 LMG sing 599 n n O5 HO5 LMG sing 600 n n C6 HC61 LMG sing 601 n n C6 HC62 LMG sing 602 n n C7 C8 LMG sing 603 n n C7 HC71 LMG sing 604 n n C7 HC72 LMG sing 605 n n C8 C9 LMG sing 606 n n C8 O7 LMG sing 607 n n C8 HC8 LMG sing 608 n n C9 O8 LMG sing 609 n n C9 HC91 LMG sing 610 n n C9 HC92 LMG sing 611 n n O7 C10 LMG sing 612 n n C10 O9 LMG doub 613 n n C10 C11 LMG sing 614 n n C11 C12 LMG sing 615 n n C11 H111 LMG sing 616 n n C11 H112 LMG sing 617 n n C12 C13 LMG sing 618 n n C12 H121 LMG sing 619 n n C12 H122 LMG sing 620 n n C13 C14 LMG sing 621 n n C13 H131 LMG sing 622 n n C13 H132 LMG sing 623 n n C14 C15 LMG sing 624 n n C14 H141 LMG sing 625 n n C14 H142 LMG sing 626 n n C15 C16 LMG sing 627 n n C15 H151 LMG sing 628 n n C15 H152 LMG sing 629 n n C16 C17 LMG sing 630 n n C16 H161 LMG sing 631 n n C16 H162 LMG sing 632 n n C17 C18 LMG sing 633 n n C17 H171 LMG sing 634 n n C17 H172 LMG sing 635 n n C18 C19 LMG sing 636 n n C18 H181 LMG sing 637 n n C18 H182 LMG sing 638 n n C19 C20 LMG sing 639 n n C19 H191 LMG sing 640 n n C19 H192 LMG sing 641 n n C20 C21 LMG sing 642 n n C20 H201 LMG sing 643 n n C20 H202 LMG sing 644 n n C21 C22 LMG sing 645 n n C21 H211 LMG sing 646 n n C21 H212 LMG sing 647 n n C22 C23 LMG sing 648 n n C22 H221 LMG sing 649 n n C22 H222 LMG sing 650 n n C23 C24 LMG sing 651 n n C23 H231 LMG sing 652 n n C23 H232 LMG sing 653 n n C24 C25 LMG sing 654 n n C24 H241 LMG sing 655 n n C24 H242 LMG sing 656 n n C25 C26 LMG sing 657 n n C25 H251 LMG sing 658 n n C25 H252 LMG sing 659 n n C26 C27 LMG sing 660 n n C26 H261 LMG sing 661 n n C26 H262 LMG sing 662 n n C27 H271 LMG sing 663 n n C27 H272 LMG sing 664 n n C27 H273 LMG sing 665 n n O8 C28 LMG sing 666 n n C28 O10 LMG doub 667 n n C28 C29 LMG sing 668 n n C29 C30 LMG sing 669 n n C29 H291 LMG sing 670 n n C29 H292 LMG sing 671 n n C30 C31 LMG sing 672 n n C30 H301 LMG sing 673 n n C30 H302 LMG sing 674 n n C31 C32 LMG sing 675 n n C31 H311 LMG sing 676 n n C31 H312 LMG sing 677 n n C32 C33 LMG sing 678 n n C32 H321 LMG sing 679 n n C32 H322 LMG sing 680 n n C33 C34 LMG sing 681 n n C33 H331 LMG sing 682 n n C33 H332 LMG sing 683 n n C34 C35 LMG sing 684 n n C34 H341 LMG sing 685 n n C34 H342 LMG sing 686 n n C35 C36 LMG sing 687 n n C35 H351 LMG sing 688 n n C35 H352 LMG sing 689 n n C36 C37 LMG sing 690 n n C36 H361 LMG sing 691 n n C36 H362 LMG sing 692 n n C37 C38 LMG sing 693 n n C37 H371 LMG sing 694 n n C37 H372 LMG sing 695 n n C38 C39 LMG sing 696 n n C38 H381 LMG sing 697 n n C38 H382 LMG sing 698 n n C39 C40 LMG sing 699 n n C39 H391 LMG sing 700 n n C39 H392 LMG sing 701 n n C40 C41 LMG sing 702 n n C40 H401 LMG sing 703 n n C40 H402 LMG sing 704 n n C41 C42 LMG sing 705 n n C41 H411 LMG sing 706 n n C41 H412 LMG sing 707 n n C42 C43 LMG sing 708 n n C42 H421 LMG sing 709 n n C42 H422 LMG sing 710 n n C43 C44 LMG sing 711 n n C43 H431 LMG sing 712 n n C43 H432 LMG sing 713 n n C44 C45 LMG sing 714 n n C44 H441 LMG sing 715 n n C44 H442 LMG sing 716 n n C45 H451 LMG sing 717 n n C45 H452 LMG sing 718 n n C45 H453 LMG sing 719 n n # _atom_sites.entry_id 6KHI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 21 DGD A 1 401 401 DGD DGD . V 21 DGD A 1 402 402 DGD DGD . W 22 LHG B 1 601 502 LHG LHG . X 23 SQD C 1 201 201 SQD SQD . Y 22 LHG C 1 202 202 LHG LHG . Z 23 SQD D 1 601 501 SQD SQD . AA 24 BCR D 1 602 601 BCR BCR . BA 24 BCR D 1 603 602 BCR BCR . CA 25 LMG F 1 701 701 LMG LMG . DA 22 LHG F 1 702 702 LHG LHG . EA 25 LMG F 1 703 703 LMG LMG . FA 22 LHG F 1 704 704 LHG LHG . GA 22 LHG F 1 705 705 LHG LHG . HA 22 LHG I 1 201 404 LHG LHG . IA 26 SF4 I 1 202 201 SF4 SF4 . JA 26 SF4 I 1 203 202 SF4 SF4 . KA 26 SF4 K 1 301 301 SF4 SF4 . LA 23 SQD L 1 101 101 SQD SQD . MA 27 FES 1 1 101 101 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMG . . . CA 25 19.291 -35.855 -44.93 1 54.27 ? C1 LMG 701 F 1 HETATM 2 O O1 LMG . . . CA 25 19.491 -35.101 -43.757 1 54.27 ? O1 LMG 701 F 1 HETATM 3 C C2 LMG . . . CA 25 17.762 -35.823 -45.209 1 54.27 ? C2 LMG 701 F 1 HETATM 4 O O2 LMG . . . CA 25 17.304 -37.081 -44.81 1 54.27 ? O2 LMG 701 F 1 HETATM 5 C C3 LMG . . . CA 25 17.605 -35.72 -46.723 1 54.27 ? C3 LMG 701 F 1 HETATM 6 O O3 LMG . . . CA 25 16.233 -35.858 -46.949 1 54.27 ? O3 LMG 701 F 1 HETATM 7 C C4 LMG . . . CA 25 18.053 -34.317 -47.151 1 54.27 ? C4 LMG 701 F 1 HETATM 8 O O4 LMG . . . CA 25 17.283 -33.372 -46.474 1 54.27 ? O4 LMG 701 F 1 HETATM 9 C C5 LMG . . . CA 25 19.569 -34.132 -46.748 1 54.27 ? C5 LMG 701 F 1 HETATM 10 O O5 LMG . . . CA 25 19.054 -31.833 -46.757 1 54.27 ? O5 LMG 701 F 1 HETATM 11 C C6 LMG . . . CA 25 19.782 -32.77 -46.023 1 54.27 ? C6 LMG 701 F 1 HETATM 12 O O6 LMG . . . CA 25 20.136 -35.217 -45.953 1 54.27 ? O6 LMG 701 F 1 HETATM 13 C C7 LMG . . . CA 25 20.819 -35.105 -43.32 1 54.27 ? C7 LMG 701 F 1 HETATM 14 C C8 LMG . . . CA 25 20.816 -34.859 -41.781 1 54.27 ? C8 LMG 701 F 1 HETATM 15 C C9 LMG . . . CA 25 20.5 -36.186 -41.061 1 54.27 ? C9 LMG 701 F 1 HETATM 16 O O7 LMG . . . CA 25 22.134 -34.504 -41.347 1 54.27 ? O7 LMG 701 F 1 HETATM 17 C C10 LMG . . . CA 25 22.999 -33.847 -42.17 1 54.27 ? C10 LMG 701 F 1 HETATM 18 O O9 LMG . . . CA 25 22.834 -32.65 -42.362 1 54.27 ? O9 LMG 701 F 1 HETATM 19 C C11 LMG . . . CA 25 24.272 -34.613 -42.375 1 54.27 ? C11 LMG 701 F 1 HETATM 20 C C12 LMG . . . CA 25 25.363 -34.171 -41.434 1 54.27 ? C12 LMG 701 F 1 HETATM 21 C C13 LMG . . . CA 25 26.72 -34.634 -41.915 1 54.27 ? C13 LMG 701 F 1 HETATM 22 C C14 LMG . . . CA 25 26.784 -36.133 -41.707 1 54.27 ? C14 LMG 701 F 1 HETATM 23 C C15 LMG . . . CA 25 27.987 -36.676 -42.434 1 54.27 ? C15 LMG 701 F 1 HETATM 24 C C16 LMG . . . CA 25 28.626 -37.761 -41.6 1 54.27 ? C16 LMG 701 F 1 HETATM 25 C C17 LMG . . . CA 25 30.085 -37.815 -41.983 1 54.27 ? C17 LMG 701 F 1 HETATM 26 C C18 LMG . . . CA 25 30.812 -36.814 -41.113 1 54.27 ? C18 LMG 701 F 1 HETATM 27 C C19 LMG . . . CA 25 32.063 -37.484 -40.605 1 54.27 ? C19 LMG 701 F 1 HETATM 28 C C20 LMG . . . CA 25 33.123 -36.419 -40.543 1 54.27 ? C20 LMG 701 F 1 HETATM 29 C C21 LMG . . . CA 25 33.738 -36.488 -39.175 1 54.27 ? C21 LMG 701 F 1 HETATM 30 C C22 LMG . . . CA 25 35.056 -35.78 -39.286 1 54.27 ? C22 LMG 701 F 1 HETATM 31 C C23 LMG . . . CA 25 36.116 -36.839 -39.331 1 54.27 ? C23 LMG 701 F 1 HETATM 32 C C24 LMG . . . CA 25 37.237 -36.283 -38.498 1 54.27 ? C24 LMG 701 F 1 HETATM 33 O O8 LMG . . . CA 25 21.243 -36.181 -39.851 1 54.27 ? O8 LMG 701 F 1 HETATM 34 C C28 LMG . . . CA 25 22.071 -37.238 -39.625 1 54.27 ? C28 LMG 701 F 1 HETATM 35 O O10 LMG . . . CA 25 21.605 -38.317 -39.288 1 54.27 ? O10 LMG 701 F 1 HETATM 36 C C29 LMG . . . CA 25 23.509 -36.872 -39.531 1 54.27 ? C29 LMG 701 F 1 HETATM 37 C C30 LMG . . . CA 25 24.136 -37.466 -38.296 1 54.27 ? C30 LMG 701 F 1 HETATM 38 C C31 LMG . . . CA 25 25.606 -37.673 -38.57 1 54.27 ? C31 LMG 701 F 1 HETATM 39 C C32 LMG . . . CA 25 26.366 -37.413 -37.285 1 54.27 ? C32 LMG 701 F 1 HETATM 40 C C33 LMG . . . CA 25 27.831 -37.418 -37.639 1 54.27 ? C33 LMG 701 F 1 HETATM 41 C C34 LMG . . . CA 25 28.614 -37.926 -36.456 1 54.27 ? C34 LMG 701 F 1 HETATM 42 C C35 LMG . . . CA 25 30.037 -37.442 -36.66 1 54.27 ? C35 LMG 701 F 1 HETATM 43 C C36 LMG . . . CA 25 30.912 -38.643 -36.511 1 54.27 ? C36 LMG 701 F 1 HETATM 44 C C37 LMG . . . CA 25 31.889 -38.369 -35.396 1 54.27 ? C37 LMG 701 F 1 HETATM 45 C C38 LMG . . . CA 25 33.217 -38.55 -36.074 1 54.27 ? C38 LMG 701 F 1 HETATM 46 C C39 LMG . . . CA 25 34.29 -38.726 -35.033 1 54.27 ? C39 LMG 701 F 1 HETATM 47 C C40 LMG . . . CA 25 35.547 -38.48 -35.819 1 54.27 ? C40 LMG 701 F 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 47 #