data_6KHI
#
_model_server_result.job_id            lttVP4WKjy7Hx9NDyUl1jw 
_model_server_result.datetime_utc      '2024-11-23 13:24:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6khi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":703}' 
#
_entry.id    6KHI 
#
_exptl.entry_id    6KHI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              787.158 
_entity.id                          25 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 25 CA N N 
? 25 EA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 I SG CYS 63 I CYS 63 1_555 JA FE3 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc2 I SG CYS 66 I CYS 66 1_555 JA FE1 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc3 I SG CYS 69 I CYS 69 1_555 JA FE2 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc4 I SG CYS 73 I CYS 73 1_555 IA FE3 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc5 I SG CYS 103 I CYS 103 1_555 IA FE1 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc6 I SG CYS 106 I CYS 106 1_555 IA FE4 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc7 I SG CYS 109 I CYS 109 1_555 IA FE2 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc8 I SG CYS 113 I CYS 113 1_555 JA FE4 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc9 K SG CYS 52 K CYS 52 1_555 KA FE3 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc10 K SG CYS 53 K CYS 53 1_555 KA FE2 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc11 K SG CYS 117 K CYS 117 1_555 KA FE4 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc12 K SG CYS 148 K CYS 148 1_555 KA FE1 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc13 T SG CYS 41 1 CYS 41 1_555 MA FE1 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc14 T SG CYS 46 1 CYS 46 1_555 MA FE1 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc15 T SG CYS 49 1 CYS 49 1_555 MA FE2 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc16 T SG CYS 79 1 CYS 79 1_555 MA FE2 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
#
_chem_comp.formula           'C45 H86 O10' 
_chem_comp.formula_weight    787.158 
_chem_comp.id                LMG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 LMG sing 579 n n 
C1 C2 LMG sing 580 n n 
C1 O6 LMG sing 581 n n 
C1 HC1 LMG sing 582 n n 
O1 C7 LMG sing 583 n n 
C2 O2 LMG sing 584 n n 
C2 C3 LMG sing 585 n n 
C2 HC2 LMG sing 586 n n 
O2 HO2 LMG sing 587 n n 
C3 O3 LMG sing 588 n n 
C3 C4 LMG sing 589 n n 
C3 HC3 LMG sing 590 n n 
O3 HO3 LMG sing 591 n n 
C4 O4 LMG sing 592 n n 
C4 C5 LMG sing 593 n n 
C4 HC4 LMG sing 594 n n 
O4 HO4 LMG sing 595 n n 
C5 C6 LMG sing 596 n n 
C5 O6 LMG sing 597 n n 
C5 HC5 LMG sing 598 n n 
O5 C6 LMG sing 599 n n 
O5 HO5 LMG sing 600 n n 
C6 HC61 LMG sing 601 n n 
C6 HC62 LMG sing 602 n n 
C7 C8 LMG sing 603 n n 
C7 HC71 LMG sing 604 n n 
C7 HC72 LMG sing 605 n n 
C8 C9 LMG sing 606 n n 
C8 O7 LMG sing 607 n n 
C8 HC8 LMG sing 608 n n 
C9 O8 LMG sing 609 n n 
C9 HC91 LMG sing 610 n n 
C9 HC92 LMG sing 611 n n 
O7 C10 LMG sing 612 n n 
C10 O9 LMG doub 613 n n 
C10 C11 LMG sing 614 n n 
C11 C12 LMG sing 615 n n 
C11 H111 LMG sing 616 n n 
C11 H112 LMG sing 617 n n 
C12 C13 LMG sing 618 n n 
C12 H121 LMG sing 619 n n 
C12 H122 LMG sing 620 n n 
C13 C14 LMG sing 621 n n 
C13 H131 LMG sing 622 n n 
C13 H132 LMG sing 623 n n 
C14 C15 LMG sing 624 n n 
C14 H141 LMG sing 625 n n 
C14 H142 LMG sing 626 n n 
C15 C16 LMG sing 627 n n 
C15 H151 LMG sing 628 n n 
C15 H152 LMG sing 629 n n 
C16 C17 LMG sing 630 n n 
C16 H161 LMG sing 631 n n 
C16 H162 LMG sing 632 n n 
C17 C18 LMG sing 633 n n 
C17 H171 LMG sing 634 n n 
C17 H172 LMG sing 635 n n 
C18 C19 LMG sing 636 n n 
C18 H181 LMG sing 637 n n 
C18 H182 LMG sing 638 n n 
C19 C20 LMG sing 639 n n 
C19 H191 LMG sing 640 n n 
C19 H192 LMG sing 641 n n 
C20 C21 LMG sing 642 n n 
C20 H201 LMG sing 643 n n 
C20 H202 LMG sing 644 n n 
C21 C22 LMG sing 645 n n 
C21 H211 LMG sing 646 n n 
C21 H212 LMG sing 647 n n 
C22 C23 LMG sing 648 n n 
C22 H221 LMG sing 649 n n 
C22 H222 LMG sing 650 n n 
C23 C24 LMG sing 651 n n 
C23 H231 LMG sing 652 n n 
C23 H232 LMG sing 653 n n 
C24 C25 LMG sing 654 n n 
C24 H241 LMG sing 655 n n 
C24 H242 LMG sing 656 n n 
C25 C26 LMG sing 657 n n 
C25 H251 LMG sing 658 n n 
C25 H252 LMG sing 659 n n 
C26 C27 LMG sing 660 n n 
C26 H261 LMG sing 661 n n 
C26 H262 LMG sing 662 n n 
C27 H271 LMG sing 663 n n 
C27 H272 LMG sing 664 n n 
C27 H273 LMG sing 665 n n 
O8 C28 LMG sing 666 n n 
C28 O10 LMG doub 667 n n 
C28 C29 LMG sing 668 n n 
C29 C30 LMG sing 669 n n 
C29 H291 LMG sing 670 n n 
C29 H292 LMG sing 671 n n 
C30 C31 LMG sing 672 n n 
C30 H301 LMG sing 673 n n 
C30 H302 LMG sing 674 n n 
C31 C32 LMG sing 675 n n 
C31 H311 LMG sing 676 n n 
C31 H312 LMG sing 677 n n 
C32 C33 LMG sing 678 n n 
C32 H321 LMG sing 679 n n 
C32 H322 LMG sing 680 n n 
C33 C34 LMG sing 681 n n 
C33 H331 LMG sing 682 n n 
C33 H332 LMG sing 683 n n 
C34 C35 LMG sing 684 n n 
C34 H341 LMG sing 685 n n 
C34 H342 LMG sing 686 n n 
C35 C36 LMG sing 687 n n 
C35 H351 LMG sing 688 n n 
C35 H352 LMG sing 689 n n 
C36 C37 LMG sing 690 n n 
C36 H361 LMG sing 691 n n 
C36 H362 LMG sing 692 n n 
C37 C38 LMG sing 693 n n 
C37 H371 LMG sing 694 n n 
C37 H372 LMG sing 695 n n 
C38 C39 LMG sing 696 n n 
C38 H381 LMG sing 697 n n 
C38 H382 LMG sing 698 n n 
C39 C40 LMG sing 699 n n 
C39 H391 LMG sing 700 n n 
C39 H392 LMG sing 701 n n 
C40 C41 LMG sing 702 n n 
C40 H401 LMG sing 703 n n 
C40 H402 LMG sing 704 n n 
C41 C42 LMG sing 705 n n 
C41 H411 LMG sing 706 n n 
C41 H412 LMG sing 707 n n 
C42 C43 LMG sing 708 n n 
C42 H421 LMG sing 709 n n 
C42 H422 LMG sing 710 n n 
C43 C44 LMG sing 711 n n 
C43 H431 LMG sing 712 n n 
C43 H432 LMG sing 713 n n 
C44 C45 LMG sing 714 n n 
C44 H441 LMG sing 715 n n 
C44 H442 LMG sing 716 n n 
C45 H451 LMG sing 717 n n 
C45 H452 LMG sing 718 n n 
C45 H453 LMG sing 719 n n 
#
_atom_sites.entry_id                     6KHI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 21 DGD A 1 401 401 DGD DGD . 
V 21 DGD A 1 402 402 DGD DGD . 
W 22 LHG B 1 601 502 LHG LHG . 
X 23 SQD C 1 201 201 SQD SQD . 
Y 22 LHG C 1 202 202 LHG LHG . 
Z 23 SQD D 1 601 501 SQD SQD . 
AA 24 BCR D 1 602 601 BCR BCR . 
BA 24 BCR D 1 603 602 BCR BCR . 
CA 25 LMG F 1 701 701 LMG LMG . 
DA 22 LHG F 1 702 702 LHG LHG . 
EA 25 LMG F 1 703 703 LMG LMG . 
FA 22 LHG F 1 704 704 LHG LHG . 
GA 22 LHG F 1 705 705 LHG LHG . 
HA 22 LHG I 1 201 404 LHG LHG . 
IA 26 SF4 I 1 202 201 SF4 SF4 . 
JA 26 SF4 I 1 203 202 SF4 SF4 . 
KA 26 SF4 K 1 301 301 SF4 SF4 . 
LA 23 SQD L 1 101 101 SQD SQD . 
MA 27 FES 1 1 101 101 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LMG . . . EA 25 8.815 -73.327 -40.99 1 76.07 ? C1 LMG 703 F 1 
HETATM 2 O O1 LMG . . . EA 25 9.338 -74.623 -40.982 1 76.07 ? O1 LMG 703 F 1 
HETATM 3 C C2 LMG . . . EA 25 9.707 -72.553 -42.021 1 76.07 ? C2 LMG 703 F 1 
HETATM 4 O O2 LMG . . . EA 25 10.001 -71.332 -41.414 1 76.07 ? O2 LMG 703 F 1 
HETATM 5 C C3 LMG . . . EA 25 8.844 -72.27 -43.283 1 76.07 ? C3 LMG 703 F 1 
HETATM 6 O O3 LMG . . . EA 25 8.507 -73.529 -43.76 1 76.07 ? O3 LMG 703 F 1 
HETATM 7 C C4 LMG . . . EA 25 7.544 -71.502 -42.905 1 76.07 ? C4 LMG 703 F 1 
HETATM 8 O O4 LMG . . . EA 25 6.699 -71.487 -44.011 1 76.07 ? O4 LMG 703 F 1 
HETATM 9 C C5 LMG . . . EA 25 6.84 -72.275 -41.723 1 76.07 ? C5 LMG 703 F 1 
HETATM 10 O O5 LMG . . . EA 25 4.851 -71.333 -42.547 1 76.07 ? O5 LMG 703 F 1 
HETATM 11 C C6 LMG . . . EA 25 5.358 -72.541 -42.063 1 76.07 ? C6 LMG 703 F 1 
HETATM 12 O O6 LMG . . . EA 25 7.48 -73.513 -41.478 1 76.07 ? O6 LMG 703 F 1 
HETATM 13 C C7 LMG . . . EA 25 9.292 -75.254 -39.726 1 76.07 ? C7 LMG 703 F 1 
HETATM 14 C C8 LMG . . . EA 25 10.753 -75.668 -39.432 1 76.07 ? C8 LMG 703 F 1 
HETATM 15 C C9 LMG . . . EA 25 11.009 -75.495 -37.93 1 76.07 ? C9 LMG 703 F 1 
HETATM 16 O O7 LMG . . . EA 25 10.882 -77.053 -39.687 1 76.07 ? O7 LMG 703 F 1 
HETATM 17 C C10 LMG . . . EA 25 11.438 -77.447 -40.863 1 76.07 ? C10 LMG 703 F 1 
HETATM 18 O O9 LMG . . . EA 25 11.412 -76.694 -41.828 1 76.07 ? O9 LMG 703 F 1 
HETATM 19 C C11 LMG . . . EA 25 12.098 -78.786 -40.778 1 76.07 ? C11 LMG 703 F 1 
HETATM 20 C C12 LMG . . . EA 25 13.315 -78.723 -39.875 1 76.07 ? C12 LMG 703 F 1 
HETATM 21 C C13 LMG . . . EA 25 13.993 -80.072 -39.7 1 76.07 ? C13 LMG 703 F 1 
HETATM 22 C C14 LMG . . . EA 25 14.638 -80.434 -41.026 1 76.07 ? C14 LMG 703 F 1 
HETATM 23 C C15 LMG . . . EA 25 16.142 -80.325 -40.891 1 76.07 ? C15 LMG 703 F 1 
HETATM 24 C C16 LMG . . . EA 25 16.797 -81.229 -41.919 1 76.07 ? C16 LMG 703 F 1 
HETATM 25 C C17 LMG . . . EA 25 18.292 -81.098 -41.75 1 76.07 ? C17 LMG 703 F 1 
HETATM 26 C C18 LMG . . . EA 25 18.691 -81.965 -40.573 1 76.07 ? C18 LMG 703 F 1 
HETATM 27 O O8 LMG . . . EA 25 12.109 -76.326 -37.613 1 76.07 ? O8 LMG 703 F 1 
HETATM 28 C C28 LMG . . . EA 25 12.796 -76.024 -36.483 1 76.07 ? C28 LMG 703 F 1 
HETATM 29 O O10 LMG . . . EA 25 12.463 -75.063 -35.801 1 76.07 ? O10 LMG 703 F 1 
HETATM 30 C C29 LMG . . . EA 25 13.825 -77.034 -36.107 1 76.07 ? C29 LMG 703 F 1 
HETATM 31 C C30 LMG . . . EA 25 14.984 -76.366 -35.4 1 76.07 ? C30 LMG 703 F 1 
HETATM 32 C C31 LMG . . . EA 25 15.385 -77.235 -34.231 1 76.07 ? C31 LMG 703 F 1 
HETATM 33 C C32 LMG . . . EA 25 15.642 -76.298 -33.062 1 76.07 ? C32 LMG 703 F 1 
HETATM 34 C C33 LMG . . . EA 25 16.553 -77.016 -32.087 1 76.07 ? C33 LMG 703 F 1 
HETATM 35 C C34 LMG . . . EA 25 16.707 -76.153 -30.851 1 76.07 ? C34 LMG 703 F 1 
HETATM 36 C C35 LMG . . . EA 25 16.719 -77.101 -29.661 1 76.07 ? C35 LMG 703 F 1 
HETATM 37 C C36 LMG . . . EA 25 16.44 -76.269 -28.445 1 76.07 ? C36 LMG 703 F 1 
HETATM 38 C C37 LMG . . . EA 25 17.687 -76.269 -27.591 1 76.07 ? C37 LMG 703 F 1 
HETATM 39 C C38 LMG . . . EA 25 17.239 -75.526 -26.368 1 76.07 ? C38 LMG 703 F 1 
HETATM 40 C C39 LMG . . . EA 25 18.439 -75.111 -25.56 1 76.07 ? C39 LMG 703 F 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    104 
_model_server_stats.query_time_ms           362 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           40 
#