data_6KHI # _model_server_result.job_id xYK61ByI7J3MADZFkgvlgg _model_server_result.datetime_utc '2024-11-06 23:35:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6khi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":705}' # _entry.id 6KHI # _exptl.entry_id 6KHI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 722.97 _entity.id 22 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 22 W N N ? 22 Y N N ? 22 DA N N ? 22 FA N N ? 22 GA N N ? 22 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I SG CYS 63 I CYS 63 1_555 JA FE3 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 I SG CYS 66 I CYS 66 1_555 JA FE1 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc3 I SG CYS 69 I CYS 69 1_555 JA FE2 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc4 I SG CYS 73 I CYS 73 1_555 IA FE3 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 I SG CYS 103 I CYS 103 1_555 IA FE1 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc6 I SG CYS 106 I CYS 106 1_555 IA FE4 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc7 I SG CYS 109 I CYS 109 1_555 IA FE2 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc8 I SG CYS 113 I CYS 113 1_555 JA FE4 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc9 K SG CYS 52 K CYS 52 1_555 KA FE3 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc10 K SG CYS 53 K CYS 53 1_555 KA FE2 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc11 K SG CYS 117 K CYS 117 1_555 KA FE4 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc12 K SG CYS 148 K CYS 148 1_555 KA FE1 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc13 T SG CYS 41 1 CYS 41 1_555 MA FE1 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc14 T SG CYS 46 1 CYS 46 1_555 MA FE1 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc15 T SG CYS 49 1 CYS 49 1_555 MA FE2 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc16 T SG CYS 79 1 CYS 79 1_555 MA FE2 FES . 1 FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? # _chem_comp.formula 'C38 H75 O10 P' _chem_comp.formula_weight 722.97 _chem_comp.id LHG _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 LHG sing 456 n n O1 HO1 LHG sing 457 n n C1 C2 LHG sing 458 n n C1 HC11 LHG sing 459 n n C1 HC12 LHG sing 460 n n C2 O2 LHG sing 461 n n C2 C3 LHG sing 462 n n C2 HC2 LHG sing 463 n n O2 H02 LHG sing 464 n n C3 O3 LHG sing 465 n n C3 HC31 LHG sing 466 n n C3 HC32 LHG sing 467 n n O3 P LHG sing 468 n n P O4 LHG sing 469 n n P O5 LHG doub 470 n n P O6 LHG sing 471 n n O4 HO4 LHG sing 472 n n O6 C4 LHG sing 473 n n C4 C5 LHG sing 474 n n C4 HC41 LHG sing 475 n n C4 HC42 LHG sing 476 n n C5 C6 LHG sing 477 n n C5 O7 LHG sing 478 n n C5 HC5 LHG sing 479 n n C6 O8 LHG sing 480 n n C6 HC61 LHG sing 481 n n C6 HC62 LHG sing 482 n n O7 C7 LHG sing 483 n n C7 O9 LHG doub 484 n n C7 C8 LHG sing 485 n n C8 C9 LHG sing 486 n n C8 HC81 LHG sing 487 n n C8 HC82 LHG sing 488 n n C9 C10 LHG sing 489 n n C9 HC91 LHG sing 490 n n C9 HC92 LHG sing 491 n n C10 C11 LHG sing 492 n n C10 H101 LHG sing 493 n n C10 H102 LHG sing 494 n n O8 C23 LHG sing 495 n n C23 O10 LHG doub 496 n n C23 C24 LHG sing 497 n n C24 C25 LHG sing 498 n n C24 H241 LHG sing 499 n n C24 H242 LHG sing 500 n n C11 C12 LHG sing 501 n n C11 H111 LHG sing 502 n n C11 H112 LHG sing 503 n n C12 C13 LHG sing 504 n n C12 H121 LHG sing 505 n n C12 H122 LHG sing 506 n n C13 C14 LHG sing 507 n n C13 H131 LHG sing 508 n n C13 H132 LHG sing 509 n n C14 C15 LHG sing 510 n n C14 H141 LHG sing 511 n n C14 H142 LHG sing 512 n n C15 C16 LHG sing 513 n n C15 H151 LHG sing 514 n n C15 H152 LHG sing 515 n n C16 C17 LHG sing 516 n n C16 H161 LHG sing 517 n n C16 H162 LHG sing 518 n n C17 C18 LHG sing 519 n n C17 H171 LHG sing 520 n n C17 H172 LHG sing 521 n n C18 C19 LHG sing 522 n n C18 H181 LHG sing 523 n n C18 H182 LHG sing 524 n n C19 C20 LHG sing 525 n n C19 H191 LHG sing 526 n n C19 H192 LHG sing 527 n n C20 C21 LHG sing 528 n n C20 H201 LHG sing 529 n n C20 H202 LHG sing 530 n n C21 C22 LHG sing 531 n n C21 H211 LHG sing 532 n n C21 H212 LHG sing 533 n n C22 H221 LHG sing 534 n n C22 H222 LHG sing 535 n n C22 H223 LHG sing 536 n n C25 C26 LHG sing 537 n n C25 H251 LHG sing 538 n n C25 H252 LHG sing 539 n n C26 C27 LHG sing 540 n n C26 H261 LHG sing 541 n n C26 H262 LHG sing 542 n n C27 C28 LHG sing 543 n n C27 H271 LHG sing 544 n n C27 H272 LHG sing 545 n n C28 C29 LHG sing 546 n n C28 H281 LHG sing 547 n n C28 H282 LHG sing 548 n n C29 C30 LHG sing 549 n n C29 H291 LHG sing 550 n n C29 H292 LHG sing 551 n n C30 C31 LHG sing 552 n n C30 H301 LHG sing 553 n n C30 H302 LHG sing 554 n n C31 C32 LHG sing 555 n n C31 H311 LHG sing 556 n n C31 H312 LHG sing 557 n n C32 C33 LHG sing 558 n n C32 H321 LHG sing 559 n n C32 H322 LHG sing 560 n n C33 C34 LHG sing 561 n n C33 H331 LHG sing 562 n n C33 H332 LHG sing 563 n n C34 C35 LHG sing 564 n n C34 H341 LHG sing 565 n n C34 H342 LHG sing 566 n n C35 C36 LHG sing 567 n n C35 H351 LHG sing 568 n n C35 H352 LHG sing 569 n n C36 C37 LHG sing 570 n n C36 H361 LHG sing 571 n n C36 H362 LHG sing 572 n n C37 C38 LHG sing 573 n n C37 H371 LHG sing 574 n n C37 H372 LHG sing 575 n n C38 H381 LHG sing 576 n n C38 H382 LHG sing 577 n n C38 H383 LHG sing 578 n n # _atom_sites.entry_id 6KHI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 21 DGD A 1 401 401 DGD DGD . V 21 DGD A 1 402 402 DGD DGD . W 22 LHG B 1 601 502 LHG LHG . X 23 SQD C 1 201 201 SQD SQD . Y 22 LHG C 1 202 202 LHG LHG . Z 23 SQD D 1 601 501 SQD SQD . AA 24 BCR D 1 602 601 BCR BCR . BA 24 BCR D 1 603 602 BCR BCR . CA 25 LMG F 1 701 701 LMG LMG . DA 22 LHG F 1 702 702 LHG LHG . EA 25 LMG F 1 703 703 LMG LMG . FA 22 LHG F 1 704 704 LHG LHG . GA 22 LHG F 1 705 705 LHG LHG . HA 22 LHG I 1 201 404 LHG LHG . IA 26 SF4 I 1 202 201 SF4 SF4 . JA 26 SF4 I 1 203 202 SF4 SF4 . KA 26 SF4 K 1 301 301 SF4 SF4 . LA 23 SQD L 1 101 101 SQD SQD . MA 27 FES 1 1 101 101 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 LHG . . . GA 22 63.16 -40.288 -42.953 1 71.7 ? O1 LHG 705 F 1 HETATM 2 C C1 LHG . . . GA 22 62.767 -38.946 -42.892 1 71.7 ? C1 LHG 705 F 1 HETATM 3 C C2 LHG . . . GA 22 62.014 -38.698 -41.586 1 71.7 ? C2 LHG 705 F 1 HETATM 4 O O2 LHG . . . GA 22 62.509 -39.556 -40.597 1 71.7 ? O2 LHG 705 F 1 HETATM 5 C C3 LHG . . . GA 22 60.518 -38.947 -41.773 1 71.7 ? C3 LHG 705 F 1 HETATM 6 O O3 LHG . . . GA 22 60.288 -39.798 -42.86 1 71.7 ? O3 LHG 705 F 1 HETATM 7 P P LHG . . . GA 22 60.025 -41.401 -42.581 1 71.7 ? P LHG 705 F 1 HETATM 8 O O4 LHG . . . GA 22 61.281 -42.175 -42.901 1 71.7 ? O4 LHG 705 F 1 HETATM 9 O O5 LHG . . . GA 22 59.668 -41.617 -41.129 1 71.7 ? O5 LHG 705 F 1 HETATM 10 O O6 LHG . . . GA 22 58.798 -41.931 -43.547 1 71.7 ? O6 LHG 705 F 1 HETATM 11 C C4 LHG . . . GA 22 57.494 -41.953 -43.04 1 71.7 ? C4 LHG 705 F 1 HETATM 12 C C5 LHG . . . GA 22 57.002 -40.526 -42.813 1 71.7 ? C5 LHG 705 F 1 HETATM 13 C C6 LHG . . . GA 22 56.429 -39.953 -44.107 1 71.7 ? C6 LHG 705 F 1 HETATM 14 O O7 LHG . . . GA 22 56.008 -40.528 -41.831 1 71.7 ? O7 LHG 705 F 1 HETATM 15 C C7 LHG . . . GA 22 56.486 -40.21 -40.556 1 71.7 ? C7 LHG 705 F 1 HETATM 16 O O9 LHG . . . GA 22 57.237 -39.305 -40.413 1 71.7 ? O9 LHG 705 F 1 HETATM 17 C C8 LHG . . . GA 22 56.039 -41.032 -39.35 1 71.7 ? C8 LHG 705 F 1 HETATM 18 C C9 LHG . . . GA 22 54.585 -40.7 -39.024 1 71.7 ? C9 LHG 705 F 1 HETATM 19 C C10 LHG . . . GA 22 53.93 -41.904 -38.356 1 71.7 ? C10 LHG 705 F 1 HETATM 20 O O8 LHG . . . GA 22 55.336 -39.138 -43.795 1 71.7 ? O8 LHG 705 F 1 HETATM 21 C C23 LHG . . . GA 22 55.618 -37.765 -43.797 1 71.7 ? C23 LHG 705 F 1 HETATM 22 O O10 LHG . . . GA 22 55.737 -37.188 -44.824 1 71.7 ? O10 LHG 705 F 1 HETATM 23 C C24 LHG . . . GA 22 55.775 -37.006 -42.48 1 71.7 ? C24 LHG 705 F 1 HETATM 24 C C11 LHG . . . GA 22 52.429 -41.654 -38.246 1 71.7 ? C11 LHG 705 F 1 HETATM 25 C C12 LHG . . . GA 22 51.718 -42.948 -37.87 1 71.7 ? C12 LHG 705 F 1 HETATM 26 C C13 LHG . . . GA 22 50.253 -42.65 -37.568 1 71.7 ? C13 LHG 705 F 1 HETATM 27 C C14 LHG . . . GA 22 49.411 -43.833 -38.032 1 71.7 ? C14 LHG 705 F 1 HETATM 28 C C15 LHG . . . GA 22 48.006 -43.756 -37.444 1 71.7 ? C15 LHG 705 F 1 HETATM 29 C C16 LHG . . . GA 22 47.116 -44.744 -38.192 1 71.7 ? C16 LHG 705 F 1 HETATM 30 C C17 LHG . . . GA 22 45.665 -44.55 -37.768 1 71.7 ? C17 LHG 705 F 1 HETATM 31 C C25 LHG . . . GA 22 54.555 -37.24 -41.59 1 71.7 ? C25 LHG 705 F 1 HETATM 32 C C26 LHG . . . GA 22 53.274 -36.962 -42.376 1 71.7 ? C26 LHG 705 F 1 HETATM 33 C C27 LHG . . . GA 22 52.052 -37.159 -41.479 1 71.7 ? C27 LHG 705 F 1 HETATM 34 C C28 LHG . . . GA 22 52.038 -38.573 -40.904 1 71.7 ? C28 LHG 705 F 1 HETATM 35 C C29 LHG . . . GA 22 50.91 -38.678 -39.882 1 71.7 ? C29 LHG 705 F 1 HETATM 36 C C30 LHG . . . GA 22 49.596 -38.983 -40.595 1 71.7 ? C30 LHG 705 F 1 HETATM 37 C C31 LHG . . . GA 22 48.464 -38.246 -39.887 1 71.7 ? C31 LHG 705 F 1 HETATM 38 C C32 LHG . . . GA 22 47.184 -39.069 -39.98 1 71.7 ? C32 LHG 705 F 1 HETATM 39 C C33 LHG . . . GA 22 47.353 -40.367 -39.195 1 71.7 ? C33 LHG 705 F 1 HETATM 40 C C34 LHG . . . GA 22 45.985 -40.919 -38.8 1 71.7 ? C34 LHG 705 F 1 HETATM 41 C C35 LHG . . . GA 22 45.244 -39.914 -37.922 1 71.7 ? C35 LHG 705 F 1 HETATM 42 C C36 LHG . . . GA 22 43.903 -40.504 -37.491 1 71.7 ? C36 LHG 705 F 1 HETATM 43 C C37 LHG . . . GA 22 43.014 -40.697 -38.715 1 71.7 ? C37 LHG 705 F 1 HETATM 44 C C38 LHG . . . GA 22 42.016 -41.818 -38.444 1 71.7 ? C38 LHG 705 F 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 70 _model_server_stats.create_model_time_ms 118 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 44 #