data_6KHJ # _model_server_result.job_id 0BY1odaX0cILnw-f0o0zcg _model_server_result.datetime_utc '2025-07-16 09:36:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6khj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":601}' # _entry.id 6KHJ # _exptl.entry_id 6KHJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 795.116 _entity.id 21 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KHJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KHJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 21 V N N ? 21 W N N ? 21 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I SG CYS 63 I CYS 63 1_555 JA FE3 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc2 I SG CYS 66 I CYS 66 1_555 JA FE1 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc3 I SG CYS 69 I CYS 69 1_555 JA FE2 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc4 I SG CYS 73 I CYS 73 1_555 IA FE3 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc5 I SG CYS 103 I CYS 103 1_555 IA FE1 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc6 I SG CYS 106 I CYS 106 1_555 IA FE4 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc7 I SG CYS 109 I CYS 109 1_555 IA FE2 SF4 . I SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc8 I SG CYS 113 I CYS 113 1_555 JA FE4 SF4 . I SF4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc9 K SG CYS 52 K CYS 52 1_555 KA FE3 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc10 K SG CYS 53 K CYS 53 1_555 KA FE2 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc11 K SG CYS 117 K CYS 117 1_555 KA FE4 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc12 K SG CYS 148 K CYS 148 1_555 KA FE1 SF4 . K SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? # _chem_comp.formula 'C41 H78 O12 S' _chem_comp.formula_weight 795.116 _chem_comp.id SQD _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SULFOQUINOVOSYLDIACYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C44 SQD sing 1041 n n O6 C1 SQD sing 1042 n n C44 C45 SQD sing 1043 n n C44 H441 SQD sing 1044 n n C44 H442 SQD sing 1045 n n C45 C46 SQD sing 1046 n n C45 O47 SQD sing 1047 n n C45 H45 SQD sing 1048 n n C46 O48 SQD sing 1049 n n C46 H461 SQD sing 1050 n n C46 H462 SQD sing 1051 n n O47 C7 SQD sing 1052 n n C7 O49 SQD doub 1053 n n C7 C8 SQD sing 1054 n n C8 C9 SQD sing 1055 n n C8 H81 SQD sing 1056 n n C8 H82 SQD sing 1057 n n C9 C10 SQD sing 1058 n n C9 H91 SQD sing 1059 n n C9 H92 SQD sing 1060 n n C10 C11 SQD sing 1061 n n C10 H101 SQD sing 1062 n n C10 H102 SQD sing 1063 n n C11 C12 SQD sing 1064 n n C11 H111 SQD sing 1065 n n C11 H112 SQD sing 1066 n n C12 C13 SQD sing 1067 n n C12 H121 SQD sing 1068 n n C12 H122 SQD sing 1069 n n C13 C14 SQD sing 1070 n n C13 H131 SQD sing 1071 n n C13 H132 SQD sing 1072 n n C14 C15 SQD sing 1073 n n C14 H141 SQD sing 1074 n n C14 H142 SQD sing 1075 n n C15 C16 SQD sing 1076 n n C15 H151 SQD sing 1077 n n C15 H152 SQD sing 1078 n n C16 C17 SQD sing 1079 n n C16 H161 SQD sing 1080 n n C16 H162 SQD sing 1081 n n C17 C18 SQD sing 1082 n n C17 H171 SQD sing 1083 n n C17 H172 SQD sing 1084 n n C18 C19 SQD sing 1085 n n C18 H181 SQD sing 1086 n n C18 H182 SQD sing 1087 n n C19 C20 SQD sing 1088 n n C19 H191 SQD sing 1089 n n C19 H192 SQD sing 1090 n n C20 C21 SQD sing 1091 n n C20 H201 SQD sing 1092 n n C20 H202 SQD sing 1093 n n C21 C22 SQD sing 1094 n n C21 H211 SQD sing 1095 n n C21 H212 SQD sing 1096 n n C22 H221 SQD sing 1097 n n C22 H222 SQD sing 1098 n n C22 H223 SQD sing 1099 n n O48 C23 SQD sing 1100 n n C23 O10 SQD doub 1101 n n C23 C24 SQD sing 1102 n n C24 C25 SQD sing 1103 n n C24 H241 SQD sing 1104 n n C24 H242 SQD sing 1105 n n C25 C26 SQD sing 1106 n n C25 H251 SQD sing 1107 n n C25 H252 SQD sing 1108 n n C26 C27 SQD sing 1109 n n C26 H261 SQD sing 1110 n n C26 H262 SQD sing 1111 n n C27 C28 SQD sing 1112 n n C27 H271 SQD sing 1113 n n C27 H272 SQD sing 1114 n n C28 C29 SQD sing 1115 n n C28 H281 SQD sing 1116 n n C28 H282 SQD sing 1117 n n C29 C30 SQD sing 1118 n n C29 H291 SQD sing 1119 n n C29 H292 SQD sing 1120 n n C30 C31 SQD sing 1121 n n C30 H301 SQD sing 1122 n n C30 H302 SQD sing 1123 n n C31 C32 SQD sing 1124 n n C31 H311 SQD sing 1125 n n C31 H312 SQD sing 1126 n n C32 C33 SQD sing 1127 n n C32 H321 SQD sing 1128 n n C32 H322 SQD sing 1129 n n C33 C34 SQD sing 1130 n n C33 H331 SQD sing 1131 n n C33 H332 SQD sing 1132 n n C34 C35 SQD sing 1133 n n C34 H341 SQD sing 1134 n n C34 H342 SQD sing 1135 n n C35 C36 SQD sing 1136 n n C35 H351 SQD sing 1137 n n C35 H352 SQD sing 1138 n n C36 C37 SQD sing 1139 n n C36 H361 SQD sing 1140 n n C36 H362 SQD sing 1141 n n C37 C38 SQD sing 1142 n n C37 H371 SQD sing 1143 n n C37 H372 SQD sing 1144 n n C38 H381 SQD sing 1145 n n C38 H382 SQD sing 1146 n n C38 H383 SQD sing 1147 n n C1 C2 SQD sing 1148 n n C1 O5 SQD sing 1149 n n C1 H1 SQD sing 1150 n n C2 O2 SQD sing 1151 n n C2 C3 SQD sing 1152 n n C2 H2 SQD sing 1153 n n O2 HO2 SQD sing 1154 n n C3 O3 SQD sing 1155 n n C3 C4 SQD sing 1156 n n C3 H3 SQD sing 1157 n n O3 HO3 SQD sing 1158 n n C4 O4 SQD sing 1159 n n C4 C5 SQD sing 1160 n n C4 H4 SQD sing 1161 n n O4 HO4 SQD sing 1162 n n C5 C6 SQD sing 1163 n n C5 O5 SQD sing 1164 n n C5 H5 SQD sing 1165 n n C6 S SQD sing 1166 n n C6 H61 SQD sing 1167 n n C6 H62 SQD sing 1168 n n S O7 SQD doub 1169 n n S O8 SQD sing 1170 n n S O9 SQD doub 1171 n n O8 HO8 SQD sing 1172 n n # _atom_sites.entry_id 6KHJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 19 DGD A 1 401 401 DGD DGD . T 19 DGD A 1 402 402 DGD DGD . U 20 PL9 A 1 403 403 PL9 PL9 . V 21 SQD B 1 601 501 SQD SQD . W 21 SQD C 1 201 201 SQD SQD . X 22 LHG C 1 202 202 LHG LHG . Y 22 LHG D 1 601 502 LHG LHG . Z 23 BCR D 1 602 601 BCR BCR . AA 24 LMT D 1 603 603 LMT LMT . BA 23 BCR F 1 701 602 BCR BCR . CA 25 LMG F 1 702 701 LMG LMG . DA 22 LHG F 1 703 702 LHG LHG . EA 25 LMG F 1 704 703 LMG LMG . FA 22 LHG F 1 705 704 LHG LHG . GA 22 LHG F 1 706 705 LHG LHG . HA 22 LHG I 1 201 404 LHG LHG . IA 26 SF4 I 1 202 201 SF4 SF4 . JA 26 SF4 I 1 203 202 SF4 SF4 . KA 26 SF4 K 1 301 301 SF4 SF4 . LA 21 SQD N 1 201 101 SQD SQD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 SQD . . . V 21 12.912 -16.984 2.775 1 38.91 ? O6 SQD 601 B 1 HETATM 2 C C44 SQD . . . V 21 13.781 -17.98 3.317 1 38.91 ? C44 SQD 601 B 1 HETATM 3 C C45 SQD . . . V 21 15.236 -17.628 2.981 1 38.91 ? C45 SQD 601 B 1 HETATM 4 C C46 SQD . . . V 21 15.615 -16.342 3.732 1 38.91 ? C46 SQD 601 B 1 HETATM 5 O O47 SQD . . . V 21 16.053 -18.674 3.404 1 38.91 ? O47 SQD 601 B 1 HETATM 6 C C7 SQD . . . V 21 17.334 -18.723 2.822 1 38.91 ? C7 SQD 601 B 1 HETATM 7 O O49 SQD . . . V 21 17.449 -18.88 1.652 1 38.91 ? O49 SQD 601 B 1 HETATM 8 C C8 SQD . . . V 21 18.588 -18.583 3.705 1 38.91 ? C8 SQD 601 B 1 HETATM 9 C C9 SQD . . . V 21 19.838 -19.212 3.073 1 38.91 ? C9 SQD 601 B 1 HETATM 10 C C10 SQD . . . V 21 21.134 -18.725 3.747 1 38.91 ? C10 SQD 601 B 1 HETATM 11 C C11 SQD . . . V 21 22.057 -19.9 4.122 1 38.91 ? C11 SQD 601 B 1 HETATM 12 C C12 SQD . . . V 21 23.125 -19.505 5.164 1 38.91 ? C12 SQD 601 B 1 HETATM 13 C C13 SQD . . . V 21 24.322 -20.481 5.155 1 38.91 ? C13 SQD 601 B 1 HETATM 14 C C14 SQD . . . V 21 23.878 -21.931 5.444 1 38.91 ? C14 SQD 601 B 1 HETATM 15 C C15 SQD . . . V 21 25.053 -22.936 5.528 1 38.91 ? C15 SQD 601 B 1 HETATM 16 C C16 SQD . . . V 21 24.529 -24.394 5.508 1 38.91 ? C16 SQD 601 B 1 HETATM 17 C C17 SQD . . . V 21 25.623 -25.454 5.199 1 38.91 ? C17 SQD 601 B 1 HETATM 18 C C18 SQD . . . V 21 24.993 -26.807 4.764 1 38.91 ? C18 SQD 601 B 1 HETATM 19 C C19 SQD . . . V 21 26.02 -27.971 4.732 1 38.91 ? C19 SQD 601 B 1 HETATM 20 C C20 SQD . . . V 21 25.498 -29.247 5.445 1 38.91 ? C20 SQD 601 B 1 HETATM 21 C C21 SQD . . . V 21 25.323 -30.44 4.472 1 38.91 ? C21 SQD 601 B 1 HETATM 22 C C22 SQD . . . V 21 25.283 -31.81 5.188 1 38.91 ? C22 SQD 601 B 1 HETATM 23 O O48 SQD . . . V 21 15.579 -16.616 5.121 1 38.91 ? O48 SQD 601 B 1 HETATM 24 C C23 SQD . . . V 21 16.155 -15.591 5.913 1 38.91 ? C23 SQD 601 B 1 HETATM 25 O O10 SQD . . . V 21 15.529 -14.623 6.173 1 38.91 ? O10 SQD 601 B 1 HETATM 26 C C24 SQD . . . V 21 17.6 -15.734 6.441 1 38.91 ? C24 SQD 601 B 1 HETATM 27 C C25 SQD . . . V 21 18.057 -14.477 7.224 1 38.91 ? C25 SQD 601 B 1 HETATM 28 C C26 SQD . . . V 21 19.558 -14.182 6.992 1 38.91 ? C26 SQD 601 B 1 HETATM 29 C C27 SQD . . . V 21 20.463 -14.992 7.956 1 38.91 ? C27 SQD 601 B 1 HETATM 30 C C28 SQD . . . V 21 21.303 -16.082 7.233 1 38.91 ? C28 SQD 601 B 1 HETATM 31 C C29 SQD . . . V 21 22.81 -15.689 7.191 1 38.91 ? C29 SQD 601 B 1 HETATM 32 C C30 SQD . . . V 21 23.722 -16.729 7.913 1 38.91 ? C30 SQD 601 B 1 HETATM 33 C C31 SQD . . . V 21 25.146 -16.786 7.28 1 38.91 ? C31 SQD 601 B 1 HETATM 34 C C32 SQD . . . V 21 25.971 -18.002 7.797 1 38.91 ? C32 SQD 601 B 1 HETATM 35 C C33 SQD . . . V 21 27.496 -17.727 7.78 1 38.91 ? C33 SQD 601 B 1 HETATM 36 C C34 SQD . . . V 21 28.296 -18.926 7.187 1 38.91 ? C34 SQD 601 B 1 HETATM 37 C C35 SQD . . . V 21 27.822 -19.295 5.753 1 38.91 ? C35 SQD 601 B 1 HETATM 38 C C36 SQD . . . V 21 28.719 -20.372 5.084 1 38.91 ? C36 SQD 601 B 1 HETATM 39 C C37 SQD . . . V 21 29.102 -21.517 6.057 1 38.91 ? C37 SQD 601 B 1 HETATM 40 C C38 SQD . . . V 21 29.121 -22.885 5.355 1 38.91 ? C38 SQD 601 B 1 HETATM 41 C C1 SQD . . . V 21 12.624 -17.147 1.407 1 38.91 ? C1 SQD 601 B 1 HETATM 42 C C2 SQD . . . V 21 11.211 -17.598 1.238 1 38.91 ? C2 SQD 601 B 1 HETATM 43 O O2 SQD . . . V 21 11.045 -18.971 1.77 1 38.91 ? O2 SQD 601 B 1 HETATM 44 C C3 SQD . . . V 21 10.812 -17.604 -0.164 1 38.91 ? C3 SQD 601 B 1 HETATM 45 O O3 SQD . . . V 21 9.414 -18.076 -0.258 1 38.91 ? O3 SQD 601 B 1 HETATM 46 C C4 SQD . . . V 21 10.911 -16.26 -0.788 1 38.91 ? C4 SQD 601 B 1 HETATM 47 O O4 SQD . . . V 21 10.55 -16.361 -2.167 1 38.91 ? O4 SQD 601 B 1 HETATM 48 C C5 SQD . . . V 21 12.345 -15.666 -0.684 1 38.91 ? C5 SQD 601 B 1 HETATM 49 C C6 SQD . . . V 21 12.296 -14.275 -0.949 1 38.91 ? C6 SQD 601 B 1 HETATM 50 O O5 SQD . . . V 21 12.889 -15.853 0.749 1 38.91 ? O5 SQD 601 B 1 HETATM 51 S S SQD . . . V 21 12.305 -13.242 0.298 1 38.91 ? S SQD 601 B 1 HETATM 52 O O7 SQD . . . V 21 12.517 -12.446 -0.913 1 38.91 ? O7 SQD 601 B 1 HETATM 53 O O8 SQD . . . V 21 11.077 -13.652 1.339 1 38.91 ? O8 SQD 601 B 1 HETATM 54 O O9 SQD . . . V 21 13.076 -11.886 0.866 1 38.91 ? O9 SQD 601 B 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 96 _model_server_stats.query_time_ms 506 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 54 #