data_6KHS
#
_model_server_result.job_id            vqJJspk1VUrDovzAp-HTaQ 
_model_server_result.datetime_utc      '2024-11-29 17:28:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6khs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    6KHS 
#
_exptl.entry_id    6KHS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6KHS 
_cell.length_a            110.218 
_cell.length_b            110.218 
_cell.length_c            130.747 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KHS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 299 n n 
N HN1 SAH sing 300 n n 
N HN2 SAH sing 301 n n 
CA CB SAH sing 302 n n 
CA C SAH sing 303 n n 
CA HA SAH sing 304 n n 
CB CG SAH sing 305 n n 
CB HB1 SAH sing 306 n n 
CB HB2 SAH sing 307 n n 
CG SD SAH sing 308 n n 
CG HG1 SAH sing 309 n n 
CG HG2 SAH sing 310 n n 
SD C5' SAH sing 311 n n 
C O SAH doub 312 n n 
C OXT SAH sing 313 n n 
OXT HXT SAH sing 314 n n 
C5' C4' SAH sing 315 n n 
C5' "H5'1" SAH sing 316 n n 
C5' "H5'2" SAH sing 317 n n 
C4' O4' SAH sing 318 n n 
C4' C3' SAH sing 319 n n 
C4' H4' SAH sing 320 n n 
O4' C1' SAH sing 321 n n 
C3' O3' SAH sing 322 n n 
C3' C2' SAH sing 323 n n 
C3' H3' SAH sing 324 n n 
O3' HO3' SAH sing 325 n n 
C2' O2' SAH sing 326 n n 
C2' C1' SAH sing 327 n n 
C2' H2' SAH sing 328 n n 
O2' HO2' SAH sing 329 n n 
C1' N9 SAH sing 330 n n 
C1' H1' SAH sing 331 n n 
N9 C8 SAH sing 332 n y 
N9 C4 SAH sing 333 n y 
C8 N7 SAH doub 334 n y 
C8 H8 SAH sing 335 n n 
N7 C5 SAH sing 336 n y 
C5 C6 SAH sing 337 n y 
C5 C4 SAH doub 338 n y 
C6 N6 SAH sing 339 n n 
C6 N1 SAH doub 340 n y 
N6 HN61 SAH sing 341 n n 
N6 HN62 SAH sing 342 n n 
N1 C2 SAH sing 343 n y 
C2 N3 SAH doub 344 n y 
C2 H2 SAH sing 345 n n 
N3 C4 SAH sing 346 n y 
#
_atom_sites.entry_id                     6KHS 
_atom_sites.fract_transf_matrix[1][1]    0.009073 
_atom_sites.fract_transf_matrix[1][2]    0.005238 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010477 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007648 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MEQ A 1 301 1 MEQ MEQ . 
D 4 SAH A 1 302 301 SAH SAH . 
E 5 HOH A 1 401 92 HOH HOH . 
E 5 HOH A 2 402 104 HOH HOH . 
E 5 HOH A 3 403 223 HOH HOH . 
E 5 HOH A 4 404 103 HOH HOH . 
E 5 HOH A 5 405 86 HOH HOH . 
E 5 HOH A 6 406 91 HOH HOH . 
E 5 HOH A 7 407 156 HOH HOH . 
E 5 HOH A 8 408 47 HOH HOH . 
E 5 HOH A 9 409 225 HOH HOH . 
E 5 HOH A 10 410 62 HOH HOH . 
E 5 HOH A 11 411 59 HOH HOH . 
E 5 HOH A 12 412 21 HOH HOH . 
E 5 HOH A 13 413 14 HOH HOH . 
E 5 HOH A 14 414 56 HOH HOH . 
E 5 HOH A 15 415 195 HOH HOH . 
E 5 HOH A 16 416 229 HOH HOH . 
E 5 HOH A 17 417 207 HOH HOH . 
E 5 HOH A 18 418 101 HOH HOH . 
E 5 HOH A 19 419 202 HOH HOH . 
E 5 HOH A 20 420 99 HOH HOH . 
E 5 HOH A 21 421 63 HOH HOH . 
E 5 HOH A 22 422 40 HOH HOH . 
E 5 HOH A 23 423 132 HOH HOH . 
E 5 HOH A 24 424 75 HOH HOH . 
E 5 HOH A 25 425 12 HOH HOH . 
E 5 HOH A 26 426 18 HOH HOH . 
E 5 HOH A 27 427 67 HOH HOH . 
E 5 HOH A 28 428 140 HOH HOH . 
E 5 HOH A 29 429 36 HOH HOH . 
E 5 HOH A 30 430 23 HOH HOH . 
E 5 HOH A 31 431 118 HOH HOH . 
E 5 HOH A 32 432 106 HOH HOH . 
E 5 HOH A 33 433 8 HOH HOH . 
E 5 HOH A 34 434 17 HOH HOH . 
E 5 HOH A 35 435 16 HOH HOH . 
E 5 HOH A 36 436 165 HOH HOH . 
E 5 HOH A 37 437 53 HOH HOH . 
E 5 HOH A 38 438 55 HOH HOH . 
E 5 HOH A 39 439 24 HOH HOH . 
E 5 HOH A 40 440 187 HOH HOH . 
E 5 HOH A 41 441 34 HOH HOH . 
E 5 HOH A 42 442 65 HOH HOH . 
E 5 HOH A 43 443 61 HOH HOH . 
E 5 HOH A 44 444 116 HOH HOH . 
E 5 HOH A 45 445 15 HOH HOH . 
E 5 HOH A 46 446 46 HOH HOH . 
E 5 HOH A 47 447 135 HOH HOH . 
E 5 HOH A 48 448 45 HOH HOH . 
E 5 HOH A 49 449 124 HOH HOH . 
E 5 HOH A 50 450 96 HOH HOH . 
E 5 HOH A 51 451 149 HOH HOH . 
E 5 HOH A 52 452 105 HOH HOH . 
E 5 HOH A 53 453 160 HOH HOH . 
E 5 HOH A 54 454 52 HOH HOH . 
E 5 HOH A 55 455 44 HOH HOH . 
E 5 HOH A 56 456 13 HOH HOH . 
E 5 HOH A 57 457 9 HOH HOH . 
E 5 HOH A 58 458 25 HOH HOH . 
E 5 HOH A 59 459 131 HOH HOH . 
E 5 HOH A 60 460 100 HOH HOH . 
E 5 HOH A 61 461 169 HOH HOH . 
E 5 HOH A 62 462 198 HOH HOH . 
E 5 HOH A 63 463 77 HOH HOH . 
E 5 HOH A 64 464 157 HOH HOH . 
E 5 HOH A 65 465 6 HOH HOH . 
E 5 HOH A 66 466 141 HOH HOH . 
E 5 HOH A 67 467 109 HOH HOH . 
E 5 HOH A 68 468 122 HOH HOH . 
E 5 HOH A 69 469 54 HOH HOH . 
E 5 HOH A 70 470 11 HOH HOH . 
E 5 HOH A 71 471 51 HOH HOH . 
E 5 HOH A 72 472 76 HOH HOH . 
E 5 HOH A 73 473 224 HOH HOH . 
E 5 HOH A 74 474 49 HOH HOH . 
E 5 HOH A 75 475 134 HOH HOH . 
E 5 HOH A 76 476 72 HOH HOH . 
E 5 HOH A 77 477 161 HOH HOH . 
E 5 HOH A 78 478 60 HOH HOH . 
E 5 HOH A 79 479 222 HOH HOH . 
E 5 HOH A 80 480 73 HOH HOH . 
E 5 HOH A 81 481 128 HOH HOH . 
E 5 HOH A 82 482 74 HOH HOH . 
E 5 HOH A 83 483 83 HOH HOH . 
E 5 HOH A 84 484 85 HOH HOH . 
E 5 HOH A 85 485 58 HOH HOH . 
E 5 HOH A 86 486 176 HOH HOH . 
E 5 HOH A 87 487 57 HOH HOH . 
E 5 HOH A 88 488 31 HOH HOH . 
E 5 HOH A 89 489 173 HOH HOH . 
E 5 HOH A 90 490 71 HOH HOH . 
E 5 HOH A 91 491 155 HOH HOH . 
E 5 HOH A 92 492 181 HOH HOH . 
E 5 HOH A 93 493 98 HOH HOH . 
E 5 HOH A 94 494 125 HOH HOH . 
E 5 HOH A 95 495 79 HOH HOH . 
E 5 HOH A 96 496 218 HOH HOH . 
E 5 HOH A 97 497 7 HOH HOH . 
E 5 HOH A 98 498 123 HOH HOH . 
E 5 HOH A 99 499 19 HOH HOH . 
E 5 HOH A 100 500 203 HOH HOH . 
E 5 HOH A 101 501 168 HOH HOH . 
E 5 HOH A 102 502 162 HOH HOH . 
E 5 HOH A 103 503 80 HOH HOH . 
E 5 HOH A 104 504 214 HOH HOH . 
E 5 HOH A 105 505 43 HOH HOH . 
E 5 HOH A 106 506 204 HOH HOH . 
E 5 HOH A 107 507 234 HOH HOH . 
E 5 HOH A 108 508 241 HOH HOH . 
E 5 HOH A 109 509 159 HOH HOH . 
E 5 HOH A 110 510 139 HOH HOH . 
E 5 HOH A 111 511 212 HOH HOH . 
E 5 HOH A 112 512 39 HOH HOH . 
E 5 HOH A 113 513 194 HOH HOH . 
E 5 HOH A 114 514 143 HOH HOH . 
E 5 HOH A 115 515 152 HOH HOH . 
E 5 HOH A 116 516 175 HOH HOH . 
E 5 HOH A 117 517 193 HOH HOH . 
E 5 HOH A 118 518 236 HOH HOH . 
E 5 HOH A 119 519 107 HOH HOH . 
E 5 HOH A 120 520 233 HOH HOH . 
E 5 HOH A 121 521 147 HOH HOH . 
E 5 HOH A 122 522 206 HOH HOH . 
E 5 HOH A 123 523 182 HOH HOH . 
E 5 HOH A 124 524 216 HOH HOH . 
E 5 HOH A 125 525 227 HOH HOH . 
E 5 HOH A 126 526 242 HOH HOH . 
F 5 HOH B 1 201 163 HOH HOH . 
F 5 HOH B 2 202 189 HOH HOH . 
F 5 HOH B 3 203 95 HOH HOH . 
F 5 HOH B 4 204 69 HOH HOH . 
F 5 HOH B 5 205 41 HOH HOH . 
F 5 HOH B 6 206 180 HOH HOH . 
F 5 HOH B 7 207 66 HOH HOH . 
F 5 HOH B 8 208 196 HOH HOH . 
F 5 HOH B 9 209 94 HOH HOH . 
F 5 HOH B 10 210 93 HOH HOH . 
F 5 HOH B 11 211 32 HOH HOH . 
F 5 HOH B 12 212 108 HOH HOH . 
F 5 HOH B 13 213 126 HOH HOH . 
F 5 HOH B 14 214 1 HOH HOH . 
F 5 HOH B 15 215 111 HOH HOH . 
F 5 HOH B 16 216 10 HOH HOH . 
F 5 HOH B 17 217 3 HOH HOH . 
F 5 HOH B 18 218 97 HOH HOH . 
F 5 HOH B 19 219 144 HOH HOH . 
F 5 HOH B 20 220 70 HOH HOH . 
F 5 HOH B 21 221 2 HOH HOH . 
F 5 HOH B 22 222 64 HOH HOH . 
F 5 HOH B 23 223 68 HOH HOH . 
F 5 HOH B 24 224 20 HOH HOH . 
F 5 HOH B 25 225 5 HOH HOH . 
F 5 HOH B 26 226 26 HOH HOH . 
F 5 HOH B 27 227 42 HOH HOH . 
F 5 HOH B 28 228 211 HOH HOH . 
F 5 HOH B 29 229 90 HOH HOH . 
F 5 HOH B 30 230 112 HOH HOH . 
F 5 HOH B 31 231 117 HOH HOH . 
F 5 HOH B 32 232 48 HOH HOH . 
F 5 HOH B 33 233 102 HOH HOH . 
F 5 HOH B 34 234 22 HOH HOH . 
F 5 HOH B 35 235 183 HOH HOH . 
F 5 HOH B 36 236 27 HOH HOH . 
F 5 HOH B 37 237 184 HOH HOH . 
F 5 HOH B 38 238 30 HOH HOH . 
F 5 HOH B 39 239 35 HOH HOH . 
F 5 HOH B 40 240 151 HOH HOH . 
F 5 HOH B 41 241 142 HOH HOH . 
F 5 HOH B 42 242 120 HOH HOH . 
F 5 HOH B 43 243 4 HOH HOH . 
F 5 HOH B 44 244 137 HOH HOH . 
F 5 HOH B 45 245 28 HOH HOH . 
F 5 HOH B 46 246 113 HOH HOH . 
F 5 HOH B 47 247 172 HOH HOH . 
F 5 HOH B 48 248 115 HOH HOH . 
F 5 HOH B 49 249 50 HOH HOH . 
F 5 HOH B 50 250 235 HOH HOH . 
F 5 HOH B 51 251 29 HOH HOH . 
F 5 HOH B 52 252 89 HOH HOH . 
F 5 HOH B 53 253 37 HOH HOH . 
F 5 HOH B 54 254 110 HOH HOH . 
F 5 HOH B 55 255 38 HOH HOH . 
F 5 HOH B 56 256 201 HOH HOH . 
F 5 HOH B 57 257 129 HOH HOH . 
F 5 HOH B 58 258 145 HOH HOH . 
F 5 HOH B 59 259 232 HOH HOH . 
F 5 HOH B 60 260 138 HOH HOH . 
F 5 HOH B 61 261 166 HOH HOH . 
F 5 HOH B 62 262 133 HOH HOH . 
F 5 HOH B 63 263 81 HOH HOH . 
F 5 HOH B 64 264 205 HOH HOH . 
F 5 HOH B 65 265 164 HOH HOH . 
F 5 HOH B 66 266 87 HOH HOH . 
F 5 HOH B 67 267 192 HOH HOH . 
F 5 HOH B 68 268 186 HOH HOH . 
F 5 HOH B 69 269 221 HOH HOH . 
F 5 HOH B 70 270 114 HOH HOH . 
F 5 HOH B 71 271 178 HOH HOH . 
F 5 HOH B 72 272 237 HOH HOH . 
F 5 HOH B 73 273 84 HOH HOH . 
F 5 HOH B 74 274 170 HOH HOH . 
F 5 HOH B 75 275 231 HOH HOH . 
F 5 HOH B 76 276 33 HOH HOH . 
F 5 HOH B 77 277 88 HOH HOH . 
F 5 HOH B 78 278 119 HOH HOH . 
F 5 HOH B 79 279 230 HOH HOH . 
F 5 HOH B 80 280 174 HOH HOH . 
F 5 HOH B 81 281 188 HOH HOH . 
F 5 HOH B 82 282 82 HOH HOH . 
F 5 HOH B 83 283 191 HOH HOH . 
F 5 HOH B 84 284 153 HOH HOH . 
F 5 HOH B 85 285 121 HOH HOH . 
F 5 HOH B 86 286 185 HOH HOH . 
F 5 HOH B 87 287 148 HOH HOH . 
F 5 HOH B 88 288 130 HOH HOH . 
F 5 HOH B 89 289 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . D 4 15.762 36.386 75.561 1 20 ? N SAH 302 A 1 
HETATM 2 C CA SAH . . . D 4 15.998 35.058 76.191 1 20 ? CA SAH 302 A 1 
HETATM 3 C CB SAH . . . D 4 15.025 34.019 75.628 1 20 ? CB SAH 302 A 1 
HETATM 4 C CG SAH . . . D 4 15.146 33.738 74.151 1 20 ? CG SAH 302 A 1 
HETATM 5 S SD SAH . . . D 4 14.22 32.292 73.575 1 20 ? SD SAH 302 A 1 
HETATM 6 C C SAH . . . D 4 17.441 34.588 75.945 1 20 ? C SAH 302 A 1 
HETATM 7 O O SAH . . . D 4 18.056 35.167 75.11 1 20 ? O SAH 302 A 1 
HETATM 8 O OXT SAH . . . D 4 17.815 33.622 76.56 1 20 ? OXT SAH 302 A 1 
HETATM 9 C C5' SAH . . . D 4 12.819 33.04 72.72 1 20 ? C5' SAH 302 A 1 
HETATM 10 C C4' SAH . . . D 4 11.779 33.696 73.607 1 20 ? C4' SAH 302 A 1 
HETATM 11 O O4' SAH . . . D 4 10.791 34.362 72.797 1 20 ? O4' SAH 302 A 1 
HETATM 12 C C3' SAH . . . D 4 11.017 32.73 74.512 1 20 ? C3' SAH 302 A 1 
HETATM 13 O O3' SAH . . . D 4 10.968 33.17 75.85 1 20 ? O3' SAH 302 A 1 
HETATM 14 C C2' SAH . . . D 4 9.626 32.682 73.885 1 20 ? C2' SAH 302 A 1 
HETATM 15 O O2' SAH . . . D 4 8.594 32.388 74.783 1 20 ? O2' SAH 302 A 1 
HETATM 16 C C1' SAH . . . D 4 9.518 34.072 73.284 1 20 ? C1' SAH 302 A 1 
HETATM 17 N N9 SAH . . . D 4 8.563 34.205 72.192 1 20 ? N9 SAH 302 A 1 
HETATM 18 C C8 SAH . . . D 4 8.334 33.317 71.188 1 20 ? C8 SAH 302 A 1 
HETATM 19 N N7 SAH . . . D 4 7.426 33.708 70.345 1 20 ? N7 SAH 302 A 1 
HETATM 20 C C5 SAH . . . D 4 7.067 34.964 70.778 1 20 ? C5 SAH 302 A 1 
HETATM 21 C C6 SAH . . . D 4 6.135 35.904 70.295 1 20 ? C6 SAH 302 A 1 
HETATM 22 N N6 SAH . . . D 4 5.41 35.726 69.202 1 20 ? N6 SAH 302 A 1 
HETATM 23 N N1 SAH . . . D 4 6.021 37.062 70.978 1 20 ? N1 SAH 302 A 1 
HETATM 24 C C2 SAH . . . D 4 6.754 37.226 72.074 1 20 ? C2 SAH 302 A 1 
HETATM 25 N N3 SAH . . . D 4 7.651 36.422 72.616 1 20 ? N3 SAH 302 A 1 
HETATM 26 C C4 SAH . . . D 4 7.76 35.283 71.921 1 20 ? C4 SAH 302 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           26 
#