data_6KIY # _model_server_result.job_id fgGDT6xD3877ndMIwIZnLQ _model_server_result.datetime_utc '2024-11-12 21:33:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kiy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6KIY # _exptl.entry_id 6KIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6KIY _cell.length_a 84.172 _cell.length_b 84.172 _cell.length_c 93.166 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 272 n n PA O2A NAP sing 273 n n PA O5B NAP sing 274 n n PA O3 NAP sing 275 n n O2A HOA2 NAP sing 276 n n O5B C5B NAP sing 277 n n C5B C4B NAP sing 278 n n C5B H51A NAP sing 279 n n C5B H52A NAP sing 280 n n C4B O4B NAP sing 281 n n C4B C3B NAP sing 282 n n C4B H4B NAP sing 283 n n O4B C1B NAP sing 284 n n C3B O3B NAP sing 285 n n C3B C2B NAP sing 286 n n C3B H3B NAP sing 287 n n O3B HO3A NAP sing 288 n n C2B O2B NAP sing 289 n n C2B C1B NAP sing 290 n n C2B H2B NAP sing 291 n n O2B P2B NAP sing 292 n n C1B N9A NAP sing 293 n n C1B H1B NAP sing 294 n n N9A C8A NAP sing 295 n y N9A C4A NAP sing 296 n y C8A N7A NAP doub 297 n y C8A H8A NAP sing 298 n n N7A C5A NAP sing 299 n y C5A C6A NAP sing 300 n y C5A C4A NAP doub 301 n y C6A N6A NAP sing 302 n n C6A N1A NAP doub 303 n y N6A H61A NAP sing 304 n n N6A H62A NAP sing 305 n n N1A C2A NAP sing 306 n y C2A N3A NAP doub 307 n y C2A H2A NAP sing 308 n n N3A C4A NAP sing 309 n y O3 PN NAP sing 310 n n PN O1N NAP doub 311 n n PN O2N NAP sing 312 n n PN O5D NAP sing 313 n n O5D C5D NAP sing 314 n n C5D C4D NAP sing 315 n n C5D H51N NAP sing 316 n n C5D H52N NAP sing 317 n n C4D O4D NAP sing 318 n n C4D C3D NAP sing 319 n n C4D H4D NAP sing 320 n n O4D C1D NAP sing 321 n n C3D O3D NAP sing 322 n n C3D C2D NAP sing 323 n n C3D H3D NAP sing 324 n n O3D HO3N NAP sing 325 n n C2D O2D NAP sing 326 n n C2D C1D NAP sing 327 n n C2D H2D NAP sing 328 n n O2D HO2N NAP sing 329 n n C1D N1N NAP sing 330 n n C1D H1D NAP sing 331 n n N1N C2N NAP sing 332 n y N1N C6N NAP doub 333 n y C2N C3N NAP doub 334 n y C2N H2N NAP sing 335 n n C3N C7N NAP sing 336 n n C3N C4N NAP sing 337 n y C7N O7N NAP doub 338 n n C7N N7N NAP sing 339 n n N7N H71N NAP sing 340 n n N7N H72N NAP sing 341 n n C4N C5N NAP doub 342 n y C4N H4N NAP sing 343 n n C5N C6N NAP sing 344 n y C5N H5N NAP sing 345 n n C6N H6N NAP sing 346 n n P2B O1X NAP doub 347 n n P2B O2X NAP sing 348 n n P2B O3X NAP sing 349 n n O2X HOP2 NAP sing 350 n n O3X HOP3 NAP sing 351 n n # _atom_sites.entry_id 6KIY _atom_sites.fract_transf_matrix[1][1] 0.01188 _atom_sites.fract_transf_matrix[1][2] 0.006859 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 301 1 NAP NAP . C 3 EPR A 1 302 1 EPR EPR . D 4 HOH A 1 401 82 HOH HOH . D 4 HOH A 2 402 54 HOH HOH . D 4 HOH A 3 403 62 HOH HOH . D 4 HOH A 4 404 81 HOH HOH . D 4 HOH A 5 405 76 HOH HOH . D 4 HOH A 6 406 71 HOH HOH . D 4 HOH A 7 407 60 HOH HOH . D 4 HOH A 8 408 84 HOH HOH . D 4 HOH A 9 409 52 HOH HOH . D 4 HOH A 10 410 23 HOH HOH . D 4 HOH A 11 411 22 HOH HOH . D 4 HOH A 12 412 86 HOH HOH . D 4 HOH A 13 413 28 HOH HOH . D 4 HOH A 14 414 36 HOH HOH . D 4 HOH A 15 415 92 HOH HOH . D 4 HOH A 16 416 58 HOH HOH . D 4 HOH A 17 417 47 HOH HOH . D 4 HOH A 18 418 5 HOH HOH . D 4 HOH A 19 419 17 HOH HOH . D 4 HOH A 20 420 9 HOH HOH . D 4 HOH A 21 421 72 HOH HOH . D 4 HOH A 22 422 30 HOH HOH . D 4 HOH A 23 423 43 HOH HOH . D 4 HOH A 24 424 59 HOH HOH . D 4 HOH A 25 425 40 HOH HOH . D 4 HOH A 26 426 29 HOH HOH . D 4 HOH A 27 427 4 HOH HOH . D 4 HOH A 28 428 3 HOH HOH . D 4 HOH A 29 429 15 HOH HOH . D 4 HOH A 30 430 38 HOH HOH . D 4 HOH A 31 431 13 HOH HOH . D 4 HOH A 32 432 67 HOH HOH . D 4 HOH A 33 433 55 HOH HOH . D 4 HOH A 34 434 41 HOH HOH . D 4 HOH A 35 435 35 HOH HOH . D 4 HOH A 36 436 94 HOH HOH . D 4 HOH A 37 437 25 HOH HOH . D 4 HOH A 38 438 26 HOH HOH . D 4 HOH A 39 439 32 HOH HOH . D 4 HOH A 40 440 8 HOH HOH . D 4 HOH A 41 441 6 HOH HOH . D 4 HOH A 42 442 18 HOH HOH . D 4 HOH A 43 443 61 HOH HOH . D 4 HOH A 44 444 57 HOH HOH . D 4 HOH A 45 445 70 HOH HOH . D 4 HOH A 46 446 66 HOH HOH . D 4 HOH A 47 447 34 HOH HOH . D 4 HOH A 48 448 21 HOH HOH . D 4 HOH A 49 449 27 HOH HOH . D 4 HOH A 50 450 90 HOH HOH . D 4 HOH A 51 451 68 HOH HOH . D 4 HOH A 52 452 83 HOH HOH . D 4 HOH A 53 453 11 HOH HOH . D 4 HOH A 54 454 42 HOH HOH . D 4 HOH A 55 455 91 HOH HOH . D 4 HOH A 56 456 69 HOH HOH . D 4 HOH A 57 457 1 HOH HOH . D 4 HOH A 58 458 53 HOH HOH . D 4 HOH A 59 459 7 HOH HOH . D 4 HOH A 60 460 74 HOH HOH . D 4 HOH A 61 461 20 HOH HOH . D 4 HOH A 62 462 2 HOH HOH . D 4 HOH A 63 463 56 HOH HOH . D 4 HOH A 64 464 44 HOH HOH . D 4 HOH A 65 465 51 HOH HOH . D 4 HOH A 66 466 19 HOH HOH . D 4 HOH A 67 467 75 HOH HOH . D 4 HOH A 68 468 31 HOH HOH . D 4 HOH A 69 469 64 HOH HOH . D 4 HOH A 70 470 10 HOH HOH . D 4 HOH A 71 471 12 HOH HOH . D 4 HOH A 72 472 45 HOH HOH . D 4 HOH A 73 473 37 HOH HOH . D 4 HOH A 74 474 88 HOH HOH . D 4 HOH A 75 475 77 HOH HOH . D 4 HOH A 76 476 78 HOH HOH . D 4 HOH A 77 477 46 HOH HOH . D 4 HOH A 78 478 14 HOH HOH . D 4 HOH A 79 479 16 HOH HOH . D 4 HOH A 80 480 24 HOH HOH . D 4 HOH A 81 481 63 HOH HOH . D 4 HOH A 82 482 33 HOH HOH . D 4 HOH A 83 483 73 HOH HOH . D 4 HOH A 84 484 79 HOH HOH . D 4 HOH A 85 485 50 HOH HOH . D 4 HOH A 86 486 65 HOH HOH . D 4 HOH A 87 487 85 HOH HOH . D 4 HOH A 88 488 49 HOH HOH . D 4 HOH A 89 489 93 HOH HOH . D 4 HOH A 90 490 39 HOH HOH . D 4 HOH A 91 491 80 HOH HOH . D 4 HOH A 92 492 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 35.939 108.368 107.476 1 28.03 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . B 2 35.919 106.858 107.335 1 23.74 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . B 2 36.867 109.164 106.65 1 26.96 ? O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . B 2 36.178 108.64 109.062 1 25.78 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . B 2 36.564 109.913 109.541 1 24.89 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . B 2 37.333 109.688 110.823 1 24.62 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . B 2 38.594 109.074 110.499 1 25.86 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . B 2 37.644 110.994 111.54 1 25.16 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . B 2 37.425 110.737 112.923 1 23.48 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . B 2 39.124 111.216 111.28 1 25.69 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . B 2 39.789 111.889 112.351 1 27.76 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . B 2 39.659 109.807 111.106 1 25.15 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . B 2 40.838 109.729 110.223 1 25 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . B 2 40.968 110.253 108.98 1 25.59 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . B 2 42.179 109.947 108.464 1 24.62 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . B 2 42.8 109.213 109.411 1 25.18 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . B 2 44.12 108.567 109.511 1 25.61 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . B 2 44.9 108.717 108.45 1 24.39 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . B 2 44.444 107.888 110.659 1 26.15 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . B 2 43.565 107.795 111.709 1 26.27 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . B 2 42.319 108.343 111.676 1 23.23 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . B 2 41.919 109.048 110.563 1 24.76 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . B 2 34.392 108.719 107.212 1 31.39 ? O3 NAP 301 A 1 HETATM 24 P PN NAP . . . B 2 33.199 109.706 107.611 1 28.25 ? PN NAP 301 A 1 HETATM 25 O O1N NAP . . . B 2 32.019 108.834 107.998 1 32.2 ? O1N NAP 301 A 1 HETATM 26 O O2N NAP . . . B 2 33.602 110.883 108.448 1 31.86 ? O2N NAP 301 A 1 HETATM 27 O O5D NAP . . . B 2 32.846 110.186 106.119 1 27.1 ? O5D NAP 301 A 1 HETATM 28 C C5D NAP . . . B 2 33.788 110.779 105.251 1 24.51 ? C5D NAP 301 A 1 HETATM 29 C C4D NAP . . . B 2 33.116 111.927 104.465 1 25.39 ? C4D NAP 301 A 1 HETATM 30 O O4D NAP . . . B 2 32.214 111.318 103.532 1 25.31 ? O4D NAP 301 A 1 HETATM 31 C C3D NAP . . . B 2 32.251 112.972 105.196 1 24.89 ? C3D NAP 301 A 1 HETATM 32 O O3D NAP . . . B 2 32.881 114.146 105.694 1 24.15 ? O3D NAP 301 A 1 HETATM 33 C C2D NAP . . . B 2 31.303 113.417 104.095 1 23.8 ? C2D NAP 301 A 1 HETATM 34 O O2D NAP . . . B 2 31.876 114.451 103.267 1 21.08 ? O2D NAP 301 A 1 HETATM 35 C C1D NAP . . . B 2 31.059 112.159 103.291 1 24.26 ? C1D NAP 301 A 1 HETATM 36 N N1N NAP . . . B 2 29.834 111.421 103.727 1 24.7 ? N1N NAP 301 A 1 HETATM 37 C C2N NAP . . . B 2 28.78 111.368 102.875 1 22.71 ? C2N NAP 301 A 1 HETATM 38 C C3N NAP . . . B 2 27.619 110.672 103.194 1 22.35 ? C3N NAP 301 A 1 HETATM 39 C C7N NAP . . . B 2 26.43 110.616 102.248 1 22.28 ? C7N NAP 301 A 1 HETATM 40 O O7N NAP . . . B 2 25.363 110.283 102.743 1 21.62 ? O7N NAP 301 A 1 HETATM 41 N N7N NAP . . . B 2 26.531 110.95 100.946 1 21.07 ? N7N NAP 301 A 1 HETATM 42 C C4N NAP . . . B 2 27.555 110.043 104.448 1 25.13 ? C4N NAP 301 A 1 HETATM 43 C C5N NAP . . . B 2 28.646 110.113 105.343 1 24.92 ? C5N NAP 301 A 1 HETATM 44 C C6N NAP . . . B 2 29.785 110.81 104.95 1 24.69 ? C6N NAP 301 A 1 HETATM 45 P P2B NAP . . . B 2 40.218 113.461 112.158 1 31.58 ? P2B NAP 301 A 1 HETATM 46 O O1X NAP . . . B 2 41.426 113.377 111.216 1 32.32 ? O1X NAP 301 A 1 HETATM 47 O O2X NAP . . . B 2 39.022 114.115 111.475 1 29.42 ? O2X NAP 301 A 1 HETATM 48 O O3X NAP . . . B 2 40.538 113.86 113.607 1 27.32 ? O3X NAP 301 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #