data_6KIY
#
_model_server_result.job_id            P3H7ae3CE3JND1BZ1j9jVA 
_model_server_result.datetime_utc      '2024-11-24 01:04:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kiy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    6KIY 
#
_exptl.entry_id    6KIY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              319.399 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '{5-[(2E)-2-methyl-3-phenylprop-2-en-1-ylidene]-4-oxo-2-thioxo-1,3-thiazolidin-3-yl}acetic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6KIY 
_cell.length_a            84.172 
_cell.length_b            84.172 
_cell.length_c            93.166 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KIY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H13 N O3 S2' 
_chem_comp.formula_weight    319.399 
_chem_comp.id                EPR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '{5-[(2E)-2-methyl-3-phenylprop-2-en-1-ylidene]-4-oxo-2-thioxo-1,3-thiazolidin-3-yl}acetic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Epalrestat 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C13 EPR sing 83 n n 
C1 C9 EPR sing 84 n n 
O1 C14 EPR doub 85 n n 
S1 C10 EPR sing 86 n n 
S1 C12 EPR sing 87 n n 
C9 C10 EPR doub 88 e n 
C10 C11 EPR sing 89 n n 
C11 N EPR sing 90 n n 
C11 O EPR doub 91 n n 
C12 N EPR sing 92 n n 
C12 S EPR doub 93 n n 
C13 C14 EPR sing 94 n n 
C14 O2 EPR sing 95 n n 
C1 C8 EPR doub 96 e n 
C1 C91 EPR sing 97 n n 
C8 C16 EPR sing 98 n n 
C16 C17 EPR doub 99 n y 
C16 C15 EPR sing 100 n y 
C17 C18 EPR sing 101 n y 
C18 C19 EPR doub 102 n y 
C19 C20 EPR sing 103 n y 
C20 C15 EPR doub 104 n y 
O2 HO2 EPR sing 105 n n 
C9 H9 EPR sing 106 n n 
C13 H13 EPR sing 107 n n 
C13 H13A EPR sing 108 n n 
C8 H5 EPR sing 109 n n 
C91 H6 EPR sing 110 n n 
C91 H7 EPR sing 111 n n 
C91 H8 EPR sing 112 n n 
C17 H91 EPR sing 113 n n 
C18 H10 EPR sing 114 n n 
C19 H11 EPR sing 115 n n 
C20 H12 EPR sing 116 n n 
C15 H131 EPR sing 117 n n 
#
_atom_sites.entry_id                     6KIY 
_atom_sites.fract_transf_matrix[1][1]    0.01188 
_atom_sites.fract_transf_matrix[1][2]    0.006859 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013718 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010734 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 301 1 NAP NAP . 
C 3 EPR A 1 302 1 EPR EPR . 
D 4 HOH A 1 401 82 HOH HOH . 
D 4 HOH A 2 402 54 HOH HOH . 
D 4 HOH A 3 403 62 HOH HOH . 
D 4 HOH A 4 404 81 HOH HOH . 
D 4 HOH A 5 405 76 HOH HOH . 
D 4 HOH A 6 406 71 HOH HOH . 
D 4 HOH A 7 407 60 HOH HOH . 
D 4 HOH A 8 408 84 HOH HOH . 
D 4 HOH A 9 409 52 HOH HOH . 
D 4 HOH A 10 410 23 HOH HOH . 
D 4 HOH A 11 411 22 HOH HOH . 
D 4 HOH A 12 412 86 HOH HOH . 
D 4 HOH A 13 413 28 HOH HOH . 
D 4 HOH A 14 414 36 HOH HOH . 
D 4 HOH A 15 415 92 HOH HOH . 
D 4 HOH A 16 416 58 HOH HOH . 
D 4 HOH A 17 417 47 HOH HOH . 
D 4 HOH A 18 418 5 HOH HOH . 
D 4 HOH A 19 419 17 HOH HOH . 
D 4 HOH A 20 420 9 HOH HOH . 
D 4 HOH A 21 421 72 HOH HOH . 
D 4 HOH A 22 422 30 HOH HOH . 
D 4 HOH A 23 423 43 HOH HOH . 
D 4 HOH A 24 424 59 HOH HOH . 
D 4 HOH A 25 425 40 HOH HOH . 
D 4 HOH A 26 426 29 HOH HOH . 
D 4 HOH A 27 427 4 HOH HOH . 
D 4 HOH A 28 428 3 HOH HOH . 
D 4 HOH A 29 429 15 HOH HOH . 
D 4 HOH A 30 430 38 HOH HOH . 
D 4 HOH A 31 431 13 HOH HOH . 
D 4 HOH A 32 432 67 HOH HOH . 
D 4 HOH A 33 433 55 HOH HOH . 
D 4 HOH A 34 434 41 HOH HOH . 
D 4 HOH A 35 435 35 HOH HOH . 
D 4 HOH A 36 436 94 HOH HOH . 
D 4 HOH A 37 437 25 HOH HOH . 
D 4 HOH A 38 438 26 HOH HOH . 
D 4 HOH A 39 439 32 HOH HOH . 
D 4 HOH A 40 440 8 HOH HOH . 
D 4 HOH A 41 441 6 HOH HOH . 
D 4 HOH A 42 442 18 HOH HOH . 
D 4 HOH A 43 443 61 HOH HOH . 
D 4 HOH A 44 444 57 HOH HOH . 
D 4 HOH A 45 445 70 HOH HOH . 
D 4 HOH A 46 446 66 HOH HOH . 
D 4 HOH A 47 447 34 HOH HOH . 
D 4 HOH A 48 448 21 HOH HOH . 
D 4 HOH A 49 449 27 HOH HOH . 
D 4 HOH A 50 450 90 HOH HOH . 
D 4 HOH A 51 451 68 HOH HOH . 
D 4 HOH A 52 452 83 HOH HOH . 
D 4 HOH A 53 453 11 HOH HOH . 
D 4 HOH A 54 454 42 HOH HOH . 
D 4 HOH A 55 455 91 HOH HOH . 
D 4 HOH A 56 456 69 HOH HOH . 
D 4 HOH A 57 457 1 HOH HOH . 
D 4 HOH A 58 458 53 HOH HOH . 
D 4 HOH A 59 459 7 HOH HOH . 
D 4 HOH A 60 460 74 HOH HOH . 
D 4 HOH A 61 461 20 HOH HOH . 
D 4 HOH A 62 462 2 HOH HOH . 
D 4 HOH A 63 463 56 HOH HOH . 
D 4 HOH A 64 464 44 HOH HOH . 
D 4 HOH A 65 465 51 HOH HOH . 
D 4 HOH A 66 466 19 HOH HOH . 
D 4 HOH A 67 467 75 HOH HOH . 
D 4 HOH A 68 468 31 HOH HOH . 
D 4 HOH A 69 469 64 HOH HOH . 
D 4 HOH A 70 470 10 HOH HOH . 
D 4 HOH A 71 471 12 HOH HOH . 
D 4 HOH A 72 472 45 HOH HOH . 
D 4 HOH A 73 473 37 HOH HOH . 
D 4 HOH A 74 474 88 HOH HOH . 
D 4 HOH A 75 475 77 HOH HOH . 
D 4 HOH A 76 476 78 HOH HOH . 
D 4 HOH A 77 477 46 HOH HOH . 
D 4 HOH A 78 478 14 HOH HOH . 
D 4 HOH A 79 479 16 HOH HOH . 
D 4 HOH A 80 480 24 HOH HOH . 
D 4 HOH A 81 481 63 HOH HOH . 
D 4 HOH A 82 482 33 HOH HOH . 
D 4 HOH A 83 483 73 HOH HOH . 
D 4 HOH A 84 484 79 HOH HOH . 
D 4 HOH A 85 485 50 HOH HOH . 
D 4 HOH A 86 486 65 HOH HOH . 
D 4 HOH A 87 487 85 HOH HOH . 
D 4 HOH A 88 488 49 HOH HOH . 
D 4 HOH A 89 489 93 HOH HOH . 
D 4 HOH A 90 490 39 HOH HOH . 
D 4 HOH A 91 491 80 HOH HOH . 
D 4 HOH A 92 492 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N EPR . . . C 3 26.236 112.49 107.717 1 57.41 ? N EPR 302 A 1 
HETATM 2 O O EPR . . . C 3 28.02 110.97 108.211 1 67.66 ? O EPR 302 A 1 
HETATM 3 S S EPR . . . C 3 24.15 114.141 107.287 1 46.41 ? S EPR 302 A 1 
HETATM 4 C C1 EPR . . . C 3 26.187 110.404 111.996 1 67.44 ? C1 EPR 302 A 1 
HETATM 5 O O1 EPR . . . C 3 26.485 113.107 104.263 1 44.19 ? O1 EPR 302 A 1 
HETATM 6 S S1 EPR . . . C 3 24.486 111.984 109.359 1 69.67 ? S1 EPR 302 A 1 
HETATM 7 O O2 EPR . . . C 3 25.354 111.684 105.441 1 50.3 ? O2 EPR 302 A 1 
HETATM 8 C C9 EPR . . . C 3 26.108 109.914 110.549 1 69.01 ? C9 EPR 302 A 1 
HETATM 9 C C10 EPR . . . C 3 25.882 111.027 109.517 1 67.57 ? C10 EPR 302 A 1 
HETATM 10 C C11 EPR . . . C 3 26.742 111.481 108.479 1 66.07 ? C11 EPR 302 A 1 
HETATM 11 C C12 EPR . . . C 3 24.989 112.936 108.021 1 59.57 ? C12 EPR 302 A 1 
HETATM 12 C C13 EPR . . . C 3 27.019 113.019 106.614 1 53.05 ? C13 EPR 302 A 1 
HETATM 13 C C14 EPR . . . C 3 26.243 112.586 105.367 1 50.48 ? C14 EPR 302 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           230 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#