data_6KJC # _model_server_result.job_id LuRFRja939sDmJaLOV6yxA _model_server_result.datetime_utc '2024-12-23 06:55:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 6KJC # _exptl.entry_id 6KJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6KJC _cell.length_a 129.576 _cell.length_b 129.576 _cell.length_c 272.664 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 6KJC _atom_sites.fract_transf_matrix[1][1] 0.007717 _atom_sites.fract_transf_matrix[1][2] 0.004456 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMT A 1 401 2 FMT FMT . D 2 FMT A 1 402 3 FMT FMT . E 2 FMT B 1 401 1 FMT FMT . F 2 FMT B 1 402 4 FMT FMT . G 3 HOH A 1 501 79 HOH HOH . G 3 HOH A 2 502 47 HOH HOH . G 3 HOH A 3 503 168 HOH HOH . G 3 HOH A 4 504 25 HOH HOH . G 3 HOH A 5 505 55 HOH HOH . G 3 HOH A 6 506 1 HOH HOH . G 3 HOH A 7 507 31 HOH HOH . G 3 HOH A 8 508 153 HOH HOH . G 3 HOH A 9 509 166 HOH HOH . G 3 HOH A 10 510 122 HOH HOH . G 3 HOH A 11 511 192 HOH HOH . G 3 HOH A 12 512 163 HOH HOH . G 3 HOH A 13 513 176 HOH HOH . G 3 HOH A 14 514 202 HOH HOH . G 3 HOH A 15 515 151 HOH HOH . G 3 HOH A 16 516 75 HOH HOH . G 3 HOH A 17 517 184 HOH HOH . G 3 HOH A 18 518 68 HOH HOH . G 3 HOH A 19 519 48 HOH HOH . G 3 HOH A 20 520 21 HOH HOH . G 3 HOH A 21 521 183 HOH HOH . G 3 HOH A 22 522 18 HOH HOH . G 3 HOH A 23 523 130 HOH HOH . G 3 HOH A 24 524 169 HOH HOH . G 3 HOH A 25 525 87 HOH HOH . G 3 HOH A 26 526 49 HOH HOH . G 3 HOH A 27 527 152 HOH HOH . G 3 HOH A 28 528 9 HOH HOH . G 3 HOH A 29 529 178 HOH HOH . G 3 HOH A 30 530 54 HOH HOH . G 3 HOH A 31 531 115 HOH HOH . G 3 HOH A 32 532 95 HOH HOH . G 3 HOH A 33 533 76 HOH HOH . G 3 HOH A 34 534 46 HOH HOH . G 3 HOH A 35 535 147 HOH HOH . G 3 HOH A 36 536 177 HOH HOH . G 3 HOH A 37 537 91 HOH HOH . G 3 HOH A 38 538 165 HOH HOH . G 3 HOH A 39 539 162 HOH HOH . G 3 HOH A 40 540 103 HOH HOH . G 3 HOH A 41 541 27 HOH HOH . G 3 HOH A 42 542 186 HOH HOH . G 3 HOH A 43 543 148 HOH HOH . G 3 HOH A 44 544 231 HOH HOH . G 3 HOH A 45 545 173 HOH HOH . G 3 HOH A 46 546 89 HOH HOH . G 3 HOH A 47 547 179 HOH HOH . G 3 HOH A 48 548 149 HOH HOH . G 3 HOH A 49 549 185 HOH HOH . G 3 HOH A 50 550 8 HOH HOH . G 3 HOH A 51 551 170 HOH HOH . G 3 HOH A 52 552 42 HOH HOH . G 3 HOH A 53 553 199 HOH HOH . G 3 HOH A 54 554 144 HOH HOH . G 3 HOH A 55 555 101 HOH HOH . G 3 HOH A 56 556 77 HOH HOH . G 3 HOH A 57 557 60 HOH HOH . G 3 HOH A 58 558 174 HOH HOH . G 3 HOH A 59 559 203 HOH HOH . G 3 HOH A 60 560 175 HOH HOH . G 3 HOH A 61 561 194 HOH HOH . G 3 HOH A 62 562 198 HOH HOH . G 3 HOH A 63 563 195 HOH HOH . G 3 HOH A 64 564 123 HOH HOH . G 3 HOH A 65 565 188 HOH HOH . G 3 HOH A 66 566 187 HOH HOH . G 3 HOH A 67 567 4 HOH HOH . G 3 HOH A 68 568 36 HOH HOH . G 3 HOH A 69 569 35 HOH HOH . G 3 HOH A 70 570 132 HOH HOH . G 3 HOH A 71 571 233 HOH HOH . G 3 HOH A 72 572 94 HOH HOH . G 3 HOH A 73 573 50 HOH HOH . G 3 HOH A 74 574 57 HOH HOH . G 3 HOH A 75 575 223 HOH HOH . G 3 HOH A 76 576 150 HOH HOH . G 3 HOH A 77 577 112 HOH HOH . G 3 HOH A 78 578 189 HOH HOH . G 3 HOH A 79 579 15 HOH HOH . G 3 HOH A 80 580 29 HOH HOH . G 3 HOH A 81 581 90 HOH HOH . G 3 HOH A 82 582 28 HOH HOH . G 3 HOH A 83 583 114 HOH HOH . G 3 HOH A 84 584 232 HOH HOH . G 3 HOH A 85 585 59 HOH HOH . G 3 HOH A 86 586 38 HOH HOH . G 3 HOH A 87 587 86 HOH HOH . G 3 HOH A 88 588 40 HOH HOH . G 3 HOH A 89 589 58 HOH HOH . G 3 HOH A 90 590 12 HOH HOH . G 3 HOH A 91 591 164 HOH HOH . G 3 HOH A 92 592 17 HOH HOH . G 3 HOH A 93 593 5 HOH HOH . G 3 HOH A 94 594 171 HOH HOH . G 3 HOH A 95 595 154 HOH HOH . G 3 HOH A 96 596 37 HOH HOH . G 3 HOH A 97 597 182 HOH HOH . G 3 HOH A 98 598 191 HOH HOH . G 3 HOH A 99 599 26 HOH HOH . G 3 HOH A 100 600 41 HOH HOH . G 3 HOH A 101 601 135 HOH HOH . G 3 HOH A 102 602 88 HOH HOH . G 3 HOH A 103 603 6 HOH HOH . G 3 HOH A 104 604 136 HOH HOH . G 3 HOH A 105 605 205 HOH HOH . G 3 HOH A 106 606 22 HOH HOH . G 3 HOH A 107 607 138 HOH HOH . G 3 HOH A 108 608 108 HOH HOH . G 3 HOH A 109 609 127 HOH HOH . G 3 HOH A 110 610 119 HOH HOH . G 3 HOH A 111 611 39 HOH HOH . G 3 HOH A 112 612 19 HOH HOH . G 3 HOH A 113 613 141 HOH HOH . G 3 HOH A 114 614 70 HOH HOH . G 3 HOH A 115 615 139 HOH HOH . G 3 HOH A 116 616 92 HOH HOH . G 3 HOH A 117 617 16 HOH HOH . G 3 HOH A 118 618 167 HOH HOH . G 3 HOH A 119 619 121 HOH HOH . G 3 HOH A 120 620 24 HOH HOH . G 3 HOH A 121 621 180 HOH HOH . G 3 HOH A 122 622 197 HOH HOH . G 3 HOH A 123 623 82 HOH HOH . G 3 HOH A 124 624 196 HOH HOH . G 3 HOH A 125 625 146 HOH HOH . G 3 HOH A 126 626 45 HOH HOH . G 3 HOH A 127 627 204 HOH HOH . G 3 HOH A 128 628 134 HOH HOH . G 3 HOH A 129 629 104 HOH HOH . G 3 HOH A 130 630 78 HOH HOH . G 3 HOH A 131 631 190 HOH HOH . G 3 HOH A 132 632 181 HOH HOH . G 3 HOH A 133 633 172 HOH HOH . G 3 HOH A 134 634 201 HOH HOH . G 3 HOH A 135 635 13 HOH HOH . G 3 HOH A 136 636 161 HOH HOH . G 3 HOH A 137 637 200 HOH HOH . G 3 HOH A 138 638 74 HOH HOH . G 3 HOH A 139 639 81 HOH HOH . G 3 HOH A 140 640 193 HOH HOH . H 3 HOH B 1 501 158 HOH HOH . H 3 HOH B 2 502 217 HOH HOH . H 3 HOH B 3 503 97 HOH HOH . H 3 HOH B 4 504 56 HOH HOH . H 3 HOH B 5 505 221 HOH HOH . H 3 HOH B 6 506 20 HOH HOH . H 3 HOH B 7 507 7 HOH HOH . H 3 HOH B 8 508 208 HOH HOH . H 3 HOH B 9 509 143 HOH HOH . H 3 HOH B 10 510 207 HOH HOH . H 3 HOH B 11 511 213 HOH HOH . H 3 HOH B 12 512 72 HOH HOH . H 3 HOH B 13 513 210 HOH HOH . H 3 HOH B 14 514 80 HOH HOH . H 3 HOH B 15 515 10 HOH HOH . H 3 HOH B 16 516 212 HOH HOH . H 3 HOH B 17 517 83 HOH HOH . H 3 HOH B 18 518 227 HOH HOH . H 3 HOH B 19 519 116 HOH HOH . H 3 HOH B 20 520 220 HOH HOH . H 3 HOH B 21 521 206 HOH HOH . H 3 HOH B 22 522 85 HOH HOH . H 3 HOH B 23 523 214 HOH HOH . H 3 HOH B 24 524 222 HOH HOH . H 3 HOH B 25 525 133 HOH HOH . H 3 HOH B 26 526 117 HOH HOH . H 3 HOH B 27 527 230 HOH HOH . H 3 HOH B 28 528 102 HOH HOH . H 3 HOH B 29 529 218 HOH HOH . H 3 HOH B 30 530 66 HOH HOH . H 3 HOH B 31 531 209 HOH HOH . H 3 HOH B 32 532 124 HOH HOH . H 3 HOH B 33 533 142 HOH HOH . H 3 HOH B 34 534 126 HOH HOH . H 3 HOH B 35 535 216 HOH HOH . H 3 HOH B 36 536 44 HOH HOH . H 3 HOH B 37 537 120 HOH HOH . H 3 HOH B 38 538 225 HOH HOH . H 3 HOH B 39 539 61 HOH HOH . H 3 HOH B 40 540 224 HOH HOH . H 3 HOH B 41 541 34 HOH HOH . H 3 HOH B 42 542 98 HOH HOH . H 3 HOH B 43 543 84 HOH HOH . H 3 HOH B 44 544 157 HOH HOH . H 3 HOH B 45 545 140 HOH HOH . H 3 HOH B 46 546 105 HOH HOH . H 3 HOH B 47 547 219 HOH HOH . H 3 HOH B 48 548 99 HOH HOH . H 3 HOH B 49 549 131 HOH HOH . H 3 HOH B 50 550 43 HOH HOH . H 3 HOH B 51 551 53 HOH HOH . H 3 HOH B 52 552 145 HOH HOH . H 3 HOH B 53 553 109 HOH HOH . H 3 HOH B 54 554 226 HOH HOH . H 3 HOH B 55 555 155 HOH HOH . H 3 HOH B 56 556 215 HOH HOH . H 3 HOH B 57 557 14 HOH HOH . H 3 HOH B 58 558 113 HOH HOH . H 3 HOH B 59 559 11 HOH HOH . H 3 HOH B 60 560 93 HOH HOH . H 3 HOH B 61 561 69 HOH HOH . H 3 HOH B 62 562 110 HOH HOH . H 3 HOH B 63 563 23 HOH HOH . H 3 HOH B 64 564 3 HOH HOH . H 3 HOH B 65 565 63 HOH HOH . H 3 HOH B 66 566 229 HOH HOH . H 3 HOH B 67 567 52 HOH HOH . H 3 HOH B 68 568 107 HOH HOH . H 3 HOH B 69 569 118 HOH HOH . H 3 HOH B 70 570 228 HOH HOH . H 3 HOH B 71 571 33 HOH HOH . H 3 HOH B 72 572 100 HOH HOH . H 3 HOH B 73 573 125 HOH HOH . H 3 HOH B 74 574 73 HOH HOH . H 3 HOH B 75 575 211 HOH HOH . H 3 HOH B 76 576 129 HOH HOH . H 3 HOH B 77 577 156 HOH HOH . H 3 HOH B 78 578 106 HOH HOH . H 3 HOH B 79 579 137 HOH HOH . H 3 HOH B 80 580 2 HOH HOH . H 3 HOH B 81 581 64 HOH HOH . H 3 HOH B 82 582 71 HOH HOH . H 3 HOH B 83 583 111 HOH HOH . H 3 HOH B 84 584 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . D 2 -38.957 16.385 -20.477 1 38.72 ? C FMT 402 A 1 HETATM 2 O O1 FMT . . . D 2 -39.559 16.897 -19.558 1 37.71 ? O1 FMT 402 A 1 HETATM 3 O O2 FMT . . . D 2 -39.594 15.36 -21.012 1 32.57 ? O2 FMT 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #