data_6KJP # _model_server_result.job_id p9xqo5mG-5YqEaE56p8QSQ _model_server_result.datetime_utc '2025-07-14 06:54:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kjp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6KJP # _exptl.entry_id 6KJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.524 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{Z},5~{E},8~{S},9~{E},11~{E},14~{S},16~{R},17~{Z},19~{E},24~{R})-24-methyl-8,14,16-tris(oxidanyl)-1-oxacyclotetracosa-3,5,9,11,17,19-hexaen-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KJP _cell.length_a 119.64 _cell.length_b 119.64 _cell.length_c 51.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H34 O5' _chem_comp.formula_weight 402.524 _chem_comp.id D9F _chem_comp.mon_nstd_flag . _chem_comp.name (3~{Z},5~{E},8~{S},9~{E},11~{E},14~{S},16~{R},17~{Z},19~{E},24~{R})-24-methyl-8,14,16-tris(oxidanyl)-1-oxacyclotetracosa-3,5,9,11,17,19-hexaen-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 C18 D9F sing 83 n n C18 C17 D9F sing 84 n n C18 C20 D9F sing 85 n n C17 C15 D9F sing 86 n n C20 C21 D9F doub 87 z n O16 C15 D9F sing 88 n n C14 C15 D9F sing 89 n n C14 C13 D9F sing 90 n n C21 C22 D9F sing 91 n n C22 C23 D9F doub 92 e n C13 C12 D9F doub 93 e n C12 C11 D9F sing 94 n n C23 C24 D9F sing 95 n n C24 C25 D9F sing 96 n n C25 C26 D9F sing 97 n n C11 C10 D9F doub 98 e n C10 C08 D9F sing 99 n n O01 C02 D9F doub 100 n n C26 C27 D9F sing 101 n n C03 C02 D9F sing 102 n n C03 C04 D9F doub 103 z n C27 O29 D9F sing 104 n n C27 C28 D9F sing 105 n n C02 O29 D9F sing 106 n n C04 C05 D9F sing 107 n n O09 C08 D9F sing 108 n n C08 C07 D9F sing 109 n n C06 C05 D9F doub 110 e n C06 C07 D9F sing 111 n n C03 H1 D9F sing 112 n n C04 H2 D9F sing 113 n n C05 H3 D9F sing 114 n n C06 H4 D9F sing 115 n n C07 H5 D9F sing 116 n n C07 H6 D9F sing 117 n n C08 H7 D9F sing 118 n n C10 H8 D9F sing 119 n n C11 H9 D9F sing 120 n n C12 H10 D9F sing 121 n n C13 H11 D9F sing 122 n n C14 H12 D9F sing 123 n n C14 H13 D9F sing 124 n n C15 H14 D9F sing 125 n n C17 H15 D9F sing 126 n n C17 H16 D9F sing 127 n n C18 H17 D9F sing 128 n n C20 H18 D9F sing 129 n n C21 H19 D9F sing 130 n n C22 H20 D9F sing 131 n n C23 H21 D9F sing 132 n n C24 H22 D9F sing 133 n n C24 H23 D9F sing 134 n n C25 H24 D9F sing 135 n n C25 H25 D9F sing 136 n n C26 H26 D9F sing 137 n n C26 H27 D9F sing 138 n n C27 H28 D9F sing 139 n n C28 H29 D9F sing 140 n n C28 H30 D9F sing 141 n n C28 H31 D9F sing 142 n n O09 H32 D9F sing 143 n n O16 H33 D9F sing 144 n n O19 H34 D9F sing 145 n n # _atom_sites.entry_id 6KJP _atom_sites.fract_transf_matrix[1][1] 0.008358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 3 D9F A 1 402 1 D9F MA . D 4 HOH A 1 501 186 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 127 HOH HOH . D 4 HOH A 4 504 83 HOH HOH . D 4 HOH A 5 505 84 HOH HOH . D 4 HOH A 6 506 172 HOH HOH . D 4 HOH A 7 507 1 HOH HOH . D 4 HOH A 8 508 112 HOH HOH . D 4 HOH A 9 509 13 HOH HOH . D 4 HOH A 10 510 124 HOH HOH . D 4 HOH A 11 511 62 HOH HOH . D 4 HOH A 12 512 23 HOH HOH . D 4 HOH A 13 513 8 HOH HOH . D 4 HOH A 14 514 25 HOH HOH . D 4 HOH A 15 515 175 HOH HOH . D 4 HOH A 16 516 158 HOH HOH . D 4 HOH A 17 517 130 HOH HOH . D 4 HOH A 18 518 96 HOH HOH . D 4 HOH A 19 519 213 HOH HOH . D 4 HOH A 20 520 16 HOH HOH . D 4 HOH A 21 521 11 HOH HOH . D 4 HOH A 22 522 7 HOH HOH . D 4 HOH A 23 523 147 HOH HOH . D 4 HOH A 24 524 26 HOH HOH . D 4 HOH A 25 525 91 HOH HOH . D 4 HOH A 26 526 55 HOH HOH . D 4 HOH A 27 527 15 HOH HOH . D 4 HOH A 28 528 169 HOH HOH . D 4 HOH A 29 529 22 HOH HOH . D 4 HOH A 30 530 206 HOH HOH . D 4 HOH A 31 531 98 HOH HOH . D 4 HOH A 32 532 102 HOH HOH . D 4 HOH A 33 533 86 HOH HOH . D 4 HOH A 34 534 36 HOH HOH . D 4 HOH A 35 535 49 HOH HOH . D 4 HOH A 36 536 48 HOH HOH . D 4 HOH A 37 537 184 HOH HOH . D 4 HOH A 38 538 108 HOH HOH . D 4 HOH A 39 539 79 HOH HOH . D 4 HOH A 40 540 32 HOH HOH . D 4 HOH A 41 541 18 HOH HOH . D 4 HOH A 42 542 197 HOH HOH . D 4 HOH A 43 543 160 HOH HOH . D 4 HOH A 44 544 52 HOH HOH . D 4 HOH A 45 545 139 HOH HOH . D 4 HOH A 46 546 122 HOH HOH . D 4 HOH A 47 547 4 HOH HOH . D 4 HOH A 48 548 114 HOH HOH . D 4 HOH A 49 549 59 HOH HOH . D 4 HOH A 50 550 38 HOH HOH . D 4 HOH A 51 551 154 HOH HOH . D 4 HOH A 52 552 58 HOH HOH . D 4 HOH A 53 553 125 HOH HOH . D 4 HOH A 54 554 140 HOH HOH . D 4 HOH A 55 555 146 HOH HOH . D 4 HOH A 56 556 191 HOH HOH . D 4 HOH A 57 557 109 HOH HOH . D 4 HOH A 58 558 42 HOH HOH . D 4 HOH A 59 559 153 HOH HOH . D 4 HOH A 60 560 81 HOH HOH . D 4 HOH A 61 561 41 HOH HOH . D 4 HOH A 62 562 80 HOH HOH . D 4 HOH A 63 563 39 HOH HOH . D 4 HOH A 64 564 17 HOH HOH . D 4 HOH A 65 565 78 HOH HOH . D 4 HOH A 66 566 5 HOH HOH . D 4 HOH A 67 567 192 HOH HOH . D 4 HOH A 68 568 31 HOH HOH . D 4 HOH A 69 569 200 HOH HOH . D 4 HOH A 70 570 170 HOH HOH . D 4 HOH A 71 571 97 HOH HOH . D 4 HOH A 72 572 6 HOH HOH . D 4 HOH A 73 573 212 HOH HOH . D 4 HOH A 74 574 70 HOH HOH . D 4 HOH A 75 575 159 HOH HOH . D 4 HOH A 76 576 71 HOH HOH . D 4 HOH A 77 577 9 HOH HOH . D 4 HOH A 78 578 72 HOH HOH . D 4 HOH A 79 579 47 HOH HOH . D 4 HOH A 80 580 119 HOH HOH . D 4 HOH A 81 581 68 HOH HOH . D 4 HOH A 82 582 73 HOH HOH . D 4 HOH A 83 583 171 HOH HOH . D 4 HOH A 84 584 12 HOH HOH . D 4 HOH A 85 585 133 HOH HOH . D 4 HOH A 86 586 28 HOH HOH . D 4 HOH A 87 587 100 HOH HOH . D 4 HOH A 88 588 208 HOH HOH . D 4 HOH A 89 589 14 HOH HOH . D 4 HOH A 90 590 85 HOH HOH . D 4 HOH A 91 591 65 HOH HOH . D 4 HOH A 92 592 44 HOH HOH . D 4 HOH A 93 593 61 HOH HOH . D 4 HOH A 94 594 3 HOH HOH . D 4 HOH A 95 595 21 HOH HOH . D 4 HOH A 96 596 57 HOH HOH . D 4 HOH A 97 597 182 HOH HOH . D 4 HOH A 98 598 166 HOH HOH . D 4 HOH A 99 599 20 HOH HOH . D 4 HOH A 100 600 178 HOH HOH . D 4 HOH A 101 601 137 HOH HOH . D 4 HOH A 102 602 101 HOH HOH . D 4 HOH A 103 603 74 HOH HOH . D 4 HOH A 104 604 161 HOH HOH . D 4 HOH A 105 605 56 HOH HOH . D 4 HOH A 106 606 46 HOH HOH . D 4 HOH A 107 607 113 HOH HOH . D 4 HOH A 108 608 66 HOH HOH . D 4 HOH A 109 609 76 HOH HOH . D 4 HOH A 110 610 75 HOH HOH . D 4 HOH A 111 611 51 HOH HOH . D 4 HOH A 112 612 116 HOH HOH . D 4 HOH A 113 613 111 HOH HOH . D 4 HOH A 114 614 179 HOH HOH . D 4 HOH A 115 615 54 HOH HOH . D 4 HOH A 116 616 40 HOH HOH . D 4 HOH A 117 617 50 HOH HOH . D 4 HOH A 118 618 89 HOH HOH . D 4 HOH A 119 619 209 HOH HOH . D 4 HOH A 120 620 165 HOH HOH . D 4 HOH A 121 621 157 HOH HOH . D 4 HOH A 122 622 164 HOH HOH . D 4 HOH A 123 623 29 HOH HOH . D 4 HOH A 124 624 177 HOH HOH . D 4 HOH A 125 625 196 HOH HOH . D 4 HOH A 126 626 149 HOH HOH . D 4 HOH A 127 627 132 HOH HOH . D 4 HOH A 128 628 203 HOH HOH . D 4 HOH A 129 629 121 HOH HOH . D 4 HOH A 130 630 63 HOH HOH . D 4 HOH A 131 631 24 HOH HOH . D 4 HOH A 132 632 94 HOH HOH . D 4 HOH A 133 633 205 HOH HOH . D 4 HOH A 134 634 126 HOH HOH . D 4 HOH A 135 635 110 HOH HOH . D 4 HOH A 136 636 67 HOH HOH . D 4 HOH A 137 637 107 HOH HOH . D 4 HOH A 138 638 174 HOH HOH . D 4 HOH A 139 639 19 HOH HOH . D 4 HOH A 140 640 115 HOH HOH . D 4 HOH A 141 641 202 HOH HOH . D 4 HOH A 142 642 210 HOH HOH . D 4 HOH A 143 643 135 HOH HOH . D 4 HOH A 144 644 92 HOH HOH . D 4 HOH A 145 645 168 HOH HOH . D 4 HOH A 146 646 187 HOH HOH . D 4 HOH A 147 647 204 HOH HOH . D 4 HOH A 148 648 185 HOH HOH . D 4 HOH A 149 649 95 HOH HOH . D 4 HOH A 150 650 77 HOH HOH . D 4 HOH A 151 651 129 HOH HOH . D 4 HOH A 152 652 117 HOH HOH . D 4 HOH A 153 653 120 HOH HOH . D 4 HOH A 154 654 176 HOH HOH . D 4 HOH A 155 655 45 HOH HOH . D 4 HOH A 156 656 145 HOH HOH . D 4 HOH A 157 657 131 HOH HOH . D 4 HOH A 158 658 53 HOH HOH . D 4 HOH A 159 659 37 HOH HOH . D 4 HOH A 160 660 173 HOH HOH . D 4 HOH A 161 661 118 HOH HOH . D 4 HOH A 162 662 199 HOH HOH . D 4 HOH A 163 663 138 HOH HOH . D 4 HOH A 164 664 103 HOH HOH . D 4 HOH A 165 665 64 HOH HOH . D 4 HOH A 166 666 198 HOH HOH . D 4 HOH A 167 667 99 HOH HOH . D 4 HOH A 168 668 43 HOH HOH . D 4 HOH A 169 669 143 HOH HOH . D 4 HOH A 170 670 163 HOH HOH . D 4 HOH A 171 671 141 HOH HOH . D 4 HOH A 172 672 150 HOH HOH . D 4 HOH A 173 673 148 HOH HOH . D 4 HOH A 174 674 201 HOH HOH . D 4 HOH A 175 675 30 HOH HOH . D 4 HOH A 176 676 152 HOH HOH . D 4 HOH A 177 677 35 HOH HOH . D 4 HOH A 178 678 128 HOH HOH . D 4 HOH A 179 679 162 HOH HOH . D 4 HOH A 180 680 144 HOH HOH . D 4 HOH A 181 681 87 HOH HOH . D 4 HOH A 182 682 60 HOH HOH . D 4 HOH A 183 683 34 HOH HOH . D 4 HOH A 184 684 106 HOH HOH . D 4 HOH A 185 685 194 HOH HOH . D 4 HOH A 186 686 190 HOH HOH . D 4 HOH A 187 687 93 HOH HOH . D 4 HOH A 188 688 151 HOH HOH . D 4 HOH A 189 689 136 HOH HOH . D 4 HOH A 190 690 69 HOH HOH . D 4 HOH A 191 691 88 HOH HOH . D 4 HOH A 192 692 123 HOH HOH . D 4 HOH A 193 693 90 HOH HOH . D 4 HOH A 194 694 105 HOH HOH . D 4 HOH A 195 695 189 HOH HOH . D 4 HOH A 196 696 142 HOH HOH . D 4 HOH A 197 697 167 HOH HOH . D 4 HOH A 198 698 82 HOH HOH . D 4 HOH A 199 699 211 HOH HOH . D 4 HOH A 200 700 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 D9F . . . C 3 10.833 82.868 105.984 1 71.47 ? C02 D9F 402 A 1 HETATM 2 C C03 D9F . . . C 3 9.367 83.316 105.947 1 66.66 ? C03 D9F 402 A 1 HETATM 3 C C04 D9F . . . C 3 8.898 84.481 106.358 1 63.37 ? C04 D9F 402 A 1 HETATM 4 C C05 D9F . . . C 3 9.759 85.586 106.967 1 61.5 ? C05 D9F 402 A 1 HETATM 5 C C06 D9F . . . C 3 9.507 86.846 106.685 1 59.8 ? C06 D9F 402 A 1 HETATM 6 C C07 D9F . . . C 3 10.371 87.946 107.296 1 57.45 ? C07 D9F 402 A 1 HETATM 7 C C08 D9F . . . C 3 9.987 89.3 106.703 1 55.8 ? C08 D9F 402 A 1 HETATM 8 C C10 D9F . . . C 3 10.687 89.497 105.36 1 55.76 ? C10 D9F 402 A 1 HETATM 9 C C11 D9F . . . C 3 10.262 90.431 104.535 1 55.02 ? C11 D9F 402 A 1 HETATM 10 C C12 D9F . . . C 3 10.952 90.65 103.191 1 56.49 ? C12 D9F 402 A 1 HETATM 11 C C13 D9F . . . C 3 12.237 90.396 103.046 1 61.34 ? C13 D9F 402 A 1 HETATM 12 C C14 D9F . . . C 3 12.89 90.632 101.686 1 66.93 ? C14 D9F 402 A 1 HETATM 13 C C15 D9F . . . C 3 14.351 90.189 101.691 1 71.63 ? C15 D9F 402 A 1 HETATM 14 C C17 D9F . . . C 3 14.505 89.093 100.638 1 74.38 ? C17 D9F 402 A 1 HETATM 15 C C18 D9F . . . C 3 15.937 88.674 100.284 1 76.63 ? C18 D9F 402 A 1 HETATM 16 C C20 D9F . . . C 3 16.912 88.827 101.453 1 74.99 ? C20 D9F 402 A 1 HETATM 17 C C21 D9F . . . C 3 16.939 87.978 102.46 1 73.96 ? C21 D9F 402 A 1 HETATM 18 C C22 D9F . . . C 3 15.981 86.792 102.545 1 72.59 ? C22 D9F 402 A 1 HETATM 19 C C23 D9F . . . C 3 15.115 86.732 103.537 1 72.07 ? C23 D9F 402 A 1 HETATM 20 C C24 D9F . . . C 3 14.151 85.552 103.629 1 71.48 ? C24 D9F 402 A 1 HETATM 21 C C25 D9F . . . C 3 14.717 84.497 104.576 1 71.06 ? C25 D9F 402 A 1 HETATM 22 C C26 D9F . . . C 3 14.034 84.499 105.941 1 71.25 ? C26 D9F 402 A 1 HETATM 23 C C27 D9F . . . C 3 13.15 83.27 106.135 1 72.01 ? C27 D9F 402 A 1 HETATM 24 C C28 D9F . . . C 3 13.737 82.389 107.236 1 71.37 ? C28 D9F 402 A 1 HETATM 25 O O01 D9F . . . C 3 11.101 81.79 105.571 1 73.41 ? O01 D9F 402 A 1 HETATM 26 O O09 D9F . . . C 3 8.601 89.366 106.521 1 56.14 ? O09 D9F 402 A 1 HETATM 27 O O16 D9F . . . C 3 15.159 91.29 101.378 1 72.1 ? O16 D9F 402 A 1 HETATM 28 O O19 D9F . . . C 3 16.387 89.448 99.206 1 79.71 ? O19 D9F 402 A 1 HETATM 29 O O29 D9F . . . C 3 11.858 83.675 106.494 1 73.1 ? O29 D9F 402 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #