data_6KJQ # _model_server_result.job_id x6tC-exjAICJ7s3TU3rlVA _model_server_result.datetime_utc '2024-11-15 15:47:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kjq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6KJQ # _exptl.entry_id 6KJQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.524 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{Z},5~{E},8~{S},9~{E},11~{E},14~{S},16~{R},17~{Z},19~{E},24~{R})-24-methyl-8,14,16-tris(oxidanyl)-1-oxacyclotetracosa-3,5,9,11,17,19-hexaen-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KJQ _cell.length_a 116.24 _cell.length_b 116.24 _cell.length_c 50.25 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KJQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H34 O5' _chem_comp.formula_weight 402.524 _chem_comp.id D9F _chem_comp.mon_nstd_flag . _chem_comp.name (3~{Z},5~{E},8~{S},9~{E},11~{E},14~{S},16~{R},17~{Z},19~{E},24~{R})-24-methyl-8,14,16-tris(oxidanyl)-1-oxacyclotetracosa-3,5,9,11,17,19-hexaen-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 C18 D9F sing 83 n n C18 C17 D9F sing 84 n n C18 C20 D9F sing 85 n n C17 C15 D9F sing 86 n n C20 C21 D9F doub 87 z n O16 C15 D9F sing 88 n n C14 C15 D9F sing 89 n n C14 C13 D9F sing 90 n n C21 C22 D9F sing 91 n n C22 C23 D9F doub 92 e n C13 C12 D9F doub 93 e n C12 C11 D9F sing 94 n n C23 C24 D9F sing 95 n n C24 C25 D9F sing 96 n n C25 C26 D9F sing 97 n n C11 C10 D9F doub 98 e n C10 C08 D9F sing 99 n n O01 C02 D9F doub 100 n n C26 C27 D9F sing 101 n n C03 C02 D9F sing 102 n n C03 C04 D9F doub 103 z n C27 O29 D9F sing 104 n n C27 C28 D9F sing 105 n n C02 O29 D9F sing 106 n n C04 C05 D9F sing 107 n n O09 C08 D9F sing 108 n n C08 C07 D9F sing 109 n n C06 C05 D9F doub 110 e n C06 C07 D9F sing 111 n n C03 H1 D9F sing 112 n n C04 H2 D9F sing 113 n n C05 H3 D9F sing 114 n n C06 H4 D9F sing 115 n n C07 H5 D9F sing 116 n n C07 H6 D9F sing 117 n n C08 H7 D9F sing 118 n n C10 H8 D9F sing 119 n n C11 H9 D9F sing 120 n n C12 H10 D9F sing 121 n n C13 H11 D9F sing 122 n n C14 H12 D9F sing 123 n n C14 H13 D9F sing 124 n n C15 H14 D9F sing 125 n n C17 H15 D9F sing 126 n n C17 H16 D9F sing 127 n n C18 H17 D9F sing 128 n n C20 H18 D9F sing 129 n n C21 H19 D9F sing 130 n n C22 H20 D9F sing 131 n n C23 H21 D9F sing 132 n n C24 H22 D9F sing 133 n n C24 H23 D9F sing 134 n n C25 H24 D9F sing 135 n n C25 H25 D9F sing 136 n n C26 H26 D9F sing 137 n n C26 H27 D9F sing 138 n n C27 H28 D9F sing 139 n n C28 H29 D9F sing 140 n n C28 H30 D9F sing 141 n n C28 H31 D9F sing 142 n n O09 H32 D9F sing 143 n n O16 H33 D9F sing 144 n n O19 H34 D9F sing 145 n n # _atom_sites.entry_id 6KJQ _atom_sites.fract_transf_matrix[1][1] 0.008603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D9F A 1 401 1 D9F MA . C 3 HOH A 1 501 84 HOH HOH . C 3 HOH A 2 502 86 HOH HOH . C 3 HOH A 3 503 20 HOH HOH . C 3 HOH A 4 504 93 HOH HOH . C 3 HOH A 5 505 67 HOH HOH . C 3 HOH A 6 506 31 HOH HOH . C 3 HOH A 7 507 12 HOH HOH . C 3 HOH A 8 508 9 HOH HOH . C 3 HOH A 9 509 1 HOH HOH . C 3 HOH A 10 510 4 HOH HOH . C 3 HOH A 11 511 66 HOH HOH . C 3 HOH A 12 512 15 HOH HOH . C 3 HOH A 13 513 10 HOH HOH . C 3 HOH A 14 514 56 HOH HOH . C 3 HOH A 15 515 32 HOH HOH . C 3 HOH A 16 516 8 HOH HOH . C 3 HOH A 17 517 26 HOH HOH . C 3 HOH A 18 518 80 HOH HOH . C 3 HOH A 19 519 50 HOH HOH . C 3 HOH A 20 520 60 HOH HOH . C 3 HOH A 21 521 2 HOH HOH . C 3 HOH A 22 522 17 HOH HOH . C 3 HOH A 23 523 51 HOH HOH . C 3 HOH A 24 524 3 HOH HOH . C 3 HOH A 25 525 46 HOH HOH . C 3 HOH A 26 526 23 HOH HOH . C 3 HOH A 27 527 33 HOH HOH . C 3 HOH A 28 528 42 HOH HOH . C 3 HOH A 29 529 85 HOH HOH . C 3 HOH A 30 530 38 HOH HOH . C 3 HOH A 31 531 29 HOH HOH . C 3 HOH A 32 532 88 HOH HOH . C 3 HOH A 33 533 30 HOH HOH . C 3 HOH A 34 534 54 HOH HOH . C 3 HOH A 35 535 79 HOH HOH . C 3 HOH A 36 536 19 HOH HOH . C 3 HOH A 37 537 6 HOH HOH . C 3 HOH A 38 538 44 HOH HOH . C 3 HOH A 39 539 18 HOH HOH . C 3 HOH A 40 540 5 HOH HOH . C 3 HOH A 41 541 41 HOH HOH . C 3 HOH A 42 542 57 HOH HOH . C 3 HOH A 43 543 111 HOH HOH . C 3 HOH A 44 544 70 HOH HOH . C 3 HOH A 45 545 35 HOH HOH . C 3 HOH A 46 546 122 HOH HOH . C 3 HOH A 47 547 21 HOH HOH . C 3 HOH A 48 548 113 HOH HOH . C 3 HOH A 49 549 43 HOH HOH . C 3 HOH A 50 550 120 HOH HOH . C 3 HOH A 51 551 25 HOH HOH . C 3 HOH A 52 552 92 HOH HOH . C 3 HOH A 53 553 115 HOH HOH . C 3 HOH A 54 554 11 HOH HOH . C 3 HOH A 55 555 61 HOH HOH . C 3 HOH A 56 556 47 HOH HOH . C 3 HOH A 57 557 77 HOH HOH . C 3 HOH A 58 558 40 HOH HOH . C 3 HOH A 59 559 49 HOH HOH . C 3 HOH A 60 560 16 HOH HOH . C 3 HOH A 61 561 7 HOH HOH . C 3 HOH A 62 562 45 HOH HOH . C 3 HOH A 63 563 83 HOH HOH . C 3 HOH A 64 564 22 HOH HOH . C 3 HOH A 65 565 112 HOH HOH . C 3 HOH A 66 566 27 HOH HOH . C 3 HOH A 67 567 75 HOH HOH . C 3 HOH A 68 568 34 HOH HOH . C 3 HOH A 69 569 64 HOH HOH . C 3 HOH A 70 570 53 HOH HOH . C 3 HOH A 71 571 78 HOH HOH . C 3 HOH A 72 572 102 HOH HOH . C 3 HOH A 73 573 63 HOH HOH . C 3 HOH A 74 574 13 HOH HOH . C 3 HOH A 75 575 118 HOH HOH . C 3 HOH A 76 576 82 HOH HOH . C 3 HOH A 77 577 62 HOH HOH . C 3 HOH A 78 578 69 HOH HOH . C 3 HOH A 79 579 107 HOH HOH . C 3 HOH A 80 580 96 HOH HOH . C 3 HOH A 81 581 74 HOH HOH . C 3 HOH A 82 582 14 HOH HOH . C 3 HOH A 83 583 116 HOH HOH . C 3 HOH A 84 584 119 HOH HOH . C 3 HOH A 85 585 65 HOH HOH . C 3 HOH A 86 586 55 HOH HOH . C 3 HOH A 87 587 100 HOH HOH . C 3 HOH A 88 588 36 HOH HOH . C 3 HOH A 89 589 28 HOH HOH . C 3 HOH A 90 590 24 HOH HOH . C 3 HOH A 91 591 76 HOH HOH . C 3 HOH A 92 592 89 HOH HOH . C 3 HOH A 93 593 95 HOH HOH . C 3 HOH A 94 594 71 HOH HOH . C 3 HOH A 95 595 110 HOH HOH . C 3 HOH A 96 596 68 HOH HOH . C 3 HOH A 97 597 48 HOH HOH . C 3 HOH A 98 598 99 HOH HOH . C 3 HOH A 99 599 59 HOH HOH . C 3 HOH A 100 600 98 HOH HOH . C 3 HOH A 101 601 73 HOH HOH . C 3 HOH A 102 602 121 HOH HOH . C 3 HOH A 103 603 87 HOH HOH . C 3 HOH A 104 604 114 HOH HOH . C 3 HOH A 105 605 58 HOH HOH . C 3 HOH A 106 606 94 HOH HOH . C 3 HOH A 107 607 72 HOH HOH . C 3 HOH A 108 608 90 HOH HOH . C 3 HOH A 109 609 91 HOH HOH . C 3 HOH A 110 610 39 HOH HOH . C 3 HOH A 111 611 81 HOH HOH . C 3 HOH A 112 612 97 HOH HOH . C 3 HOH A 113 613 108 HOH HOH . C 3 HOH A 114 614 37 HOH HOH . C 3 HOH A 115 615 117 HOH HOH . C 3 HOH A 116 616 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 D9F . . . B 2 7.465 -33.822 2.174 1 41.31 ? C02 D9F 401 A 1 HETATM 2 C C03 D9F . . . B 2 6.244 -32.919 2.376 1 38.3 ? C03 D9F 401 A 1 HETATM 3 C C04 D9F . . . B 2 6.29 -31.633 2.674 1 36.85 ? C04 D9F 401 A 1 HETATM 4 C C05 D9F . . . B 2 7.59 -30.86 2.893 1 37.17 ? C05 D9F 401 A 1 HETATM 5 C C06 D9F . . . B 2 7.57 -29.543 2.96 1 38.03 ? C06 D9F 401 A 1 HETATM 6 C C07 D9F . . . B 2 8.87 -28.771 3.185 1 37.7 ? C07 D9F 401 A 1 HETATM 7 C C08 D9F . . . B 2 8.784 -27.386 2.55 1 36.19 ? C08 D9F 401 A 1 HETATM 8 C C10 D9F . . . B 2 8.647 -27.525 1.036 1 36.27 ? C10 D9F 401 A 1 HETATM 9 C C11 D9F . . . B 2 9.625 -27.098 0.266 1 37.36 ? C11 D9F 401 A 1 HETATM 10 C C12 D9F . . . B 2 9.533 -27.22 -1.251 1 40.74 ? C12 D9F 401 A 1 HETATM 11 C C13 D9F . . . B 2 10.504 -26.721 -1.987 1 45.45 ? C13 D9F 401 A 1 HETATM 12 C C14 D9F . . . B 2 11.684 -26.024 -1.309 1 47.5 ? C14 D9F 401 A 1 HETATM 13 C C15 D9F . . . B 2 12.94 -26.897 -1.328 1 50.05 ? C15 D9F 401 A 1 HETATM 14 C C17 D9F . . . B 2 12.773 -28.067 -2.298 1 53.21 ? C17 D9F 401 A 1 HETATM 15 C C18 D9F . . . B 2 14.029 -28.934 -2.406 1 55.93 ? C18 D9F 401 A 1 HETATM 16 C C20 D9F . . . B 2 13.652 -30.362 -2.822 1 54.68 ? C20 D9F 401 A 1 HETATM 17 C C21 D9F . . . B 2 13.411 -31.405 -2.039 1 52.94 ? C21 D9F 401 A 1 HETATM 18 C C22 D9F . . . B 2 13.455 -31.468 -0.51 1 51.61 ? C22 D9F 401 A 1 HETATM 19 C C23 D9F . . . B 2 13.269 -32.657 0.037 1 50.82 ? C23 D9F 401 A 1 HETATM 20 C C24 D9F . . . B 2 13.28 -32.886 1.547 1 49.67 ? C24 D9F 401 A 1 HETATM 21 C C25 D9F . . . B 2 12.244 -33.949 1.907 1 46.2 ? C25 D9F 401 A 1 HETATM 22 C C26 D9F . . . B 2 10.862 -33.323 2.086 1 44.98 ? C26 D9F 401 A 1 HETATM 23 C C27 D9F . . . B 2 9.754 -34.334 2.382 1 43.87 ? C27 D9F 401 A 1 HETATM 24 C C28 D9F . . . B 2 10.244 -35.358 3.404 1 44.31 ? C28 D9F 401 A 1 HETATM 25 O O01 D9F . . . B 2 7.395 -34.703 1.386 1 42.2 ? O01 D9F 401 A 1 HETATM 26 O O09 D9F . . . B 2 7.673 -26.712 3.058 1 35.65 ? O09 D9F 401 A 1 HETATM 27 O O16 D9F . . . B 2 14.034 -26.114 -1.714 1 49.47 ? O16 D9F 401 A 1 HETATM 28 O O19 D9F . . . B 2 14.744 -28.904 -1.204 1 60.24 ? O19 D9F 401 A 1 HETATM 29 O O29 D9F . . . B 2 8.647 -33.654 2.906 1 43.39 ? O29 D9F 401 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #