data_6KJR # _model_server_result.job_id gHbib3YoeDj0ZsdVJ7gHdA _model_server_result.datetime_utc '2025-07-14 05:49:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kjr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6KJR # _exptl.entry_id 6KJR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 502.597 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[[(3~{E},5~{Z},8~{S},9~{E},11~{E},14~{S},16~{R},17~{Z},19~{E},24~{R})-24-methyl-14,16-bis(oxidanyl)-2-oxidanylidene-1-oxacyclotetracosa-3,5,9,11,17,19-hexaen-8-yl]oxy]-4-oxidanylidene-butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KJR _cell.length_a 117.947 _cell.length_b 117.947 _cell.length_c 52.222 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H38 O8' _chem_comp.formula_weight 502.597 _chem_comp.id D9O _chem_comp.mon_nstd_flag . _chem_comp.name '4-[[(3~{E},5~{Z},8~{S},9~{E},11~{E},14~{S},16~{R},17~{Z},19~{E},24~{R})-24-methyl-14,16-bis(oxidanyl)-2-oxidanylidene-1-oxacyclotetracosa-3,5,9,11,17,19-hexaen-8-yl]oxy]-4-oxidanylidene-butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O26 C25 D9O sing 83 n n C25 C27 D9O sing 84 n n C25 C24 D9O sing 85 n n C27 C28 D9O doub 86 z n C21 C22 D9O sing 87 n n C21 C20 D9O sing 88 n n C24 C22 D9O sing 89 n n C28 C29 D9O sing 90 n n C19 C20 D9O doub 91 e n C19 C18 D9O sing 92 n n O23 C22 D9O sing 93 n n C29 C30 D9O doub 94 e n C18 C17 D9O doub 95 e n C17 C08 D9O sing 96 n n C30 C31 D9O sing 97 n n O09 C08 D9O sing 98 n n O09 C10 D9O sing 99 n n C08 C07 D9O sing 100 n n C31 C32 D9O sing 101 n n C07 C06 D9O sing 102 n n C10 O16 D9O doub 103 n n C10 C11 D9O sing 104 n n C32 C33 D9O sing 105 n n O01 C02 D9O doub 106 n n C34 C35 D9O sing 107 n n C34 C33 D9O sing 108 n n C34 O36 D9O sing 109 n n C11 C12 D9O sing 110 n n O15 C13 D9O doub 111 n n C04 C03 D9O doub 112 e n C04 C05 D9O sing 113 n n C06 C05 D9O doub 114 z n C02 O36 D9O sing 115 n n C02 C03 D9O sing 116 n n C12 C13 D9O sing 117 n n C13 O14 D9O sing 118 n n C11 H1 D9O sing 119 n n C11 H2 D9O sing 120 n n C12 H3 D9O sing 121 n n C12 H4 D9O sing 122 n n C17 H5 D9O sing 123 n n C18 H6 D9O sing 124 n n C19 H7 D9O sing 125 n n C20 H8 D9O sing 126 n n C21 H9 D9O sing 127 n n C21 H10 D9O sing 128 n n C22 H11 D9O sing 129 n n C24 H12 D9O sing 130 n n C24 H13 D9O sing 131 n n C25 H14 D9O sing 132 n n O14 H15 D9O sing 133 n n C03 H16 D9O sing 134 n n C04 H17 D9O sing 135 n n C05 H18 D9O sing 136 n n C06 H19 D9O sing 137 n n C07 H20 D9O sing 138 n n C07 H21 D9O sing 139 n n C08 H22 D9O sing 140 n n C27 H23 D9O sing 141 n n C28 H24 D9O sing 142 n n C29 H25 D9O sing 143 n n C30 H26 D9O sing 144 n n C31 H27 D9O sing 145 n n C31 H28 D9O sing 146 n n C32 H29 D9O sing 147 n n C32 H30 D9O sing 148 n n C33 H31 D9O sing 149 n n C33 H32 D9O sing 150 n n C34 H33 D9O sing 151 n n C35 H34 D9O sing 152 n n C35 H35 D9O sing 153 n n C35 H36 D9O sing 154 n n O23 H37 D9O sing 155 n n O26 H38 D9O sing 156 n n # _atom_sites.entry_id 6KJR _atom_sites.fract_transf_matrix[1][1] 0.008478 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D9O A 1 401 1 D9O SMA . C 3 HOH A 1 501 17 HOH HOH . C 3 HOH A 2 502 119 HOH HOH . C 3 HOH A 3 503 96 HOH HOH . C 3 HOH A 4 504 89 HOH HOH . C 3 HOH A 5 505 40 HOH HOH . C 3 HOH A 6 506 64 HOH HOH . C 3 HOH A 7 507 84 HOH HOH . C 3 HOH A 8 508 41 HOH HOH . C 3 HOH A 9 509 10 HOH HOH . C 3 HOH A 10 510 20 HOH HOH . C 3 HOH A 11 511 44 HOH HOH . C 3 HOH A 12 512 123 HOH HOH . C 3 HOH A 13 513 52 HOH HOH . C 3 HOH A 14 514 51 HOH HOH . C 3 HOH A 15 515 29 HOH HOH . C 3 HOH A 16 516 111 HOH HOH . C 3 HOH A 17 517 3 HOH HOH . C 3 HOH A 18 518 88 HOH HOH . C 3 HOH A 19 519 15 HOH HOH . C 3 HOH A 20 520 110 HOH HOH . C 3 HOH A 21 521 4 HOH HOH . C 3 HOH A 22 522 5 HOH HOH . C 3 HOH A 23 523 63 HOH HOH . C 3 HOH A 24 524 47 HOH HOH . C 3 HOH A 25 525 24 HOH HOH . C 3 HOH A 26 526 43 HOH HOH . C 3 HOH A 27 527 28 HOH HOH . C 3 HOH A 28 528 48 HOH HOH . C 3 HOH A 29 529 90 HOH HOH . C 3 HOH A 30 530 31 HOH HOH . C 3 HOH A 31 531 49 HOH HOH . C 3 HOH A 32 532 101 HOH HOH . C 3 HOH A 33 533 26 HOH HOH . C 3 HOH A 34 534 93 HOH HOH . C 3 HOH A 35 535 86 HOH HOH . C 3 HOH A 36 536 13 HOH HOH . C 3 HOH A 37 537 104 HOH HOH . C 3 HOH A 38 538 61 HOH HOH . C 3 HOH A 39 539 22 HOH HOH . C 3 HOH A 40 540 1 HOH HOH . C 3 HOH A 41 541 126 HOH HOH . C 3 HOH A 42 542 54 HOH HOH . C 3 HOH A 43 543 7 HOH HOH . C 3 HOH A 44 544 82 HOH HOH . C 3 HOH A 45 545 2 HOH HOH . C 3 HOH A 46 546 6 HOH HOH . C 3 HOH A 47 547 58 HOH HOH . C 3 HOH A 48 548 122 HOH HOH . C 3 HOH A 49 549 14 HOH HOH . C 3 HOH A 50 550 37 HOH HOH . C 3 HOH A 51 551 8 HOH HOH . C 3 HOH A 52 552 45 HOH HOH . C 3 HOH A 53 553 19 HOH HOH . C 3 HOH A 54 554 85 HOH HOH . C 3 HOH A 55 555 134 HOH HOH . C 3 HOH A 56 556 102 HOH HOH . C 3 HOH A 57 557 106 HOH HOH . C 3 HOH A 58 558 100 HOH HOH . C 3 HOH A 59 559 115 HOH HOH . C 3 HOH A 60 560 56 HOH HOH . C 3 HOH A 61 561 65 HOH HOH . C 3 HOH A 62 562 73 HOH HOH . C 3 HOH A 63 563 66 HOH HOH . C 3 HOH A 64 564 57 HOH HOH . C 3 HOH A 65 565 72 HOH HOH . C 3 HOH A 66 566 62 HOH HOH . C 3 HOH A 67 567 60 HOH HOH . C 3 HOH A 68 568 121 HOH HOH . C 3 HOH A 69 569 120 HOH HOH . C 3 HOH A 70 570 97 HOH HOH . C 3 HOH A 71 571 23 HOH HOH . C 3 HOH A 72 572 27 HOH HOH . C 3 HOH A 73 573 25 HOH HOH . C 3 HOH A 74 574 124 HOH HOH . C 3 HOH A 75 575 16 HOH HOH . C 3 HOH A 76 576 91 HOH HOH . C 3 HOH A 77 577 11 HOH HOH . C 3 HOH A 78 578 50 HOH HOH . C 3 HOH A 79 579 35 HOH HOH . C 3 HOH A 80 580 108 HOH HOH . C 3 HOH A 81 581 67 HOH HOH . C 3 HOH A 82 582 18 HOH HOH . C 3 HOH A 83 583 12 HOH HOH . C 3 HOH A 84 584 94 HOH HOH . C 3 HOH A 85 585 21 HOH HOH . C 3 HOH A 86 586 33 HOH HOH . C 3 HOH A 87 587 36 HOH HOH . C 3 HOH A 88 588 81 HOH HOH . C 3 HOH A 89 589 107 HOH HOH . C 3 HOH A 90 590 39 HOH HOH . C 3 HOH A 91 591 95 HOH HOH . C 3 HOH A 92 592 98 HOH HOH . C 3 HOH A 93 593 105 HOH HOH . C 3 HOH A 94 594 132 HOH HOH . C 3 HOH A 95 595 55 HOH HOH . C 3 HOH A 96 596 103 HOH HOH . C 3 HOH A 97 597 113 HOH HOH . C 3 HOH A 98 598 112 HOH HOH . C 3 HOH A 99 599 76 HOH HOH . C 3 HOH A 100 600 131 HOH HOH . C 3 HOH A 101 601 92 HOH HOH . C 3 HOH A 102 602 83 HOH HOH . C 3 HOH A 103 603 118 HOH HOH . C 3 HOH A 104 604 130 HOH HOH . C 3 HOH A 105 605 78 HOH HOH . C 3 HOH A 106 606 42 HOH HOH . C 3 HOH A 107 607 9 HOH HOH . C 3 HOH A 108 608 138 HOH HOH . C 3 HOH A 109 609 71 HOH HOH . C 3 HOH A 110 610 46 HOH HOH . C 3 HOH A 111 611 32 HOH HOH . C 3 HOH A 112 612 137 HOH HOH . C 3 HOH A 113 613 53 HOH HOH . C 3 HOH A 114 614 129 HOH HOH . C 3 HOH A 115 615 87 HOH HOH . C 3 HOH A 116 616 80 HOH HOH . C 3 HOH A 117 617 68 HOH HOH . C 3 HOH A 118 618 77 HOH HOH . C 3 HOH A 119 619 38 HOH HOH . C 3 HOH A 120 620 70 HOH HOH . C 3 HOH A 121 621 109 HOH HOH . C 3 HOH A 122 622 128 HOH HOH . C 3 HOH A 123 623 75 HOH HOH . C 3 HOH A 124 624 59 HOH HOH . C 3 HOH A 125 625 99 HOH HOH . C 3 HOH A 126 626 34 HOH HOH . C 3 HOH A 127 627 74 HOH HOH . C 3 HOH A 128 628 117 HOH HOH . C 3 HOH A 129 629 136 HOH HOH . C 3 HOH A 130 630 114 HOH HOH . C 3 HOH A 131 631 133 HOH HOH . C 3 HOH A 132 632 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 D9O . . . B 2 7.331 -25.818 2.242 1 86.55 ? C10 D9O 401 A 1 HETATM 2 C C11 D9O . . . B 2 8.267 -25.026 3.153 1 89.44 ? C11 D9O 401 A 1 HETATM 3 C C12 D9O . . . B 2 7.566 -23.882 3.877 1 93.64 ? C12 D9O 401 A 1 HETATM 4 C C13 D9O . . . B 2 8.459 -22.646 3.943 1 97.34 ? C13 D9O 401 A 1 HETATM 5 C C17 D9O . . . B 2 10.132 -27.131 0.527 1 97 ? C17 D9O 401 A 1 HETATM 6 C C18 D9O . . . B 2 10.867 -28.189 0.263 1 99.26 ? C18 D9O 401 A 1 HETATM 7 C C19 D9O . . . B 2 11.913 -28.182 -0.847 1 102.06 ? C19 D9O 401 A 1 HETATM 8 C C20 D9O . . . B 2 13.15 -28.483 -0.513 1 104.72 ? C20 D9O 401 A 1 HETATM 9 C C21 D9O . . . B 2 14.277 -28.505 -1.54 1 106.95 ? C21 D9O 401 A 1 HETATM 10 C C22 D9O . . . B 2 15.604 -28.394 -0.787 1 108.63 ? C22 D9O 401 A 1 HETATM 11 C C24 D9O . . . B 2 16.676 -29.306 -1.39 1 109.01 ? C24 D9O 401 A 1 HETATM 12 C C25 D9O . . . B 2 16.164 -30.247 -2.478 1 108.88 ? C25 D9O 401 A 1 HETATM 13 O O14 D9O . . . B 2 8.073 -21.614 4.551 1 98.62 ? O14 D9O 401 A 1 HETATM 14 C C02 D9O . . . B 2 8.735 -33.553 3.668 1 96.65 ? C02 D9O 401 A 1 HETATM 15 C C03 D9O . . . B 2 8.795 -32.165 4.306 1 93.93 ? C03 D9O 401 A 1 HETATM 16 C C04 D9O . . . B 2 9.311 -31.147 3.65 1 91.8 ? C04 D9O 401 A 1 HETATM 17 C C05 D9O . . . B 2 9.362 -29.781 4.327 1 90.7 ? C05 D9O 401 A 1 HETATM 18 C C06 D9O . . . B 2 9.203 -28.66 3.654 1 91.25 ? C06 D9O 401 A 1 HETATM 19 C C07 D9O . . . B 2 8.952 -28.648 2.149 1 93.43 ? C07 D9O 401 A 1 HETATM 20 C C08 D9O . . . B 2 9.113 -27.206 1.665 1 94.71 ? C08 D9O 401 A 1 HETATM 21 C C27 D9O . . . B 2 16.531 -31.697 -2.165 1 108.71 ? C27 D9O 401 A 1 HETATM 22 C C28 D9O . . . B 2 15.943 -32.443 -1.245 1 108.32 ? C28 D9O 401 A 1 HETATM 23 C C29 D9O . . . B 2 14.809 -31.985 -0.325 1 108.14 ? C29 D9O 401 A 1 HETATM 24 C C30 D9O . . . B 2 14.507 -32.769 0.692 1 108.32 ? C30 D9O 401 A 1 HETATM 25 C C31 D9O . . . B 2 13.398 -32.438 1.69 1 107.93 ? C31 D9O 401 A 1 HETATM 26 C C32 D9O . . . B 2 13.056 -33.71 2.469 1 106.27 ? C32 D9O 401 A 1 HETATM 27 C C33 D9O . . . B 2 11.808 -33.562 3.338 1 104.18 ? C33 D9O 401 A 1 HETATM 28 C C34 D9O . . . B 2 10.752 -34.636 3.069 1 101.97 ? C34 D9O 401 A 1 HETATM 29 C C35 D9O . . . B 2 11.382 -36.019 3.217 1 101.86 ? C35 D9O 401 A 1 HETATM 30 O O01 D9O . . . B 2 7.868 -33.815 2.905 1 95.72 ? O01 D9O 401 A 1 HETATM 31 O O09 D9O . . . B 2 7.875 -26.675 1.278 1 91.34 ? O09 D9O 401 A 1 HETATM 32 O O15 D9O . . . B 2 9.586 -22.662 3.382 1 98.82 ? O15 D9O 401 A 1 HETATM 33 O O16 D9O . . . B 2 6.156 -25.705 2.351 1 80.67 ? O16 D9O 401 A 1 HETATM 34 O O23 D9O . . . B 2 16.044 -27.064 -0.822 1 108.82 ? O23 D9O 401 A 1 HETATM 35 O O26 D9O . . . B 2 16.777 -29.89 -3.685 1 108.71 ? O26 D9O 401 A 1 HETATM 36 O O36 D9O . . . B 2 9.703 -34.514 3.989 1 99.61 ? O36 D9O 401 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #