data_6KJV # _model_server_result.job_id tWqK13v8js8buxAc0PVAsA _model_server_result.datetime_utc '2024-11-27 01:16:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2001}' # _entry.id 6KJV # _exptl.entry_id 6KJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 515.527 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{4-[(R)-(3,3-dimethylcyclobutyl)({6-[4-(trifluoromethyl)-1H-imidazol-1-yl]pyridin-3-yl}amino)methyl]benzene-1-carbonyl}-beta-alanine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.53 _cell.angle_beta 90.34 _cell.angle_gamma 106.49 _cell.entry_id 6KJV _cell.length_a 65.03 _cell.length_b 68.3 _cell.length_c 83.43 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 226 1_555 A SG CYS 320 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 341 A CYS 317 1_555 A SG CYS 385 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 B SG CYS 93 B CYS 226 1_555 B SG CYS 320 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 341 B CYS 317 1_555 B SG CYS 385 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C26 H28 F3 N5 O3' _chem_comp.formula_weight 515.527 _chem_comp.id 97Y _chem_comp.mon_nstd_flag . _chem_comp.name N-{4-[(R)-(3,3-dimethylcyclobutyl)({6-[4-(trifluoromethyl)-1H-imidazol-1-yl]pyridin-3-yl}amino)methyl]benzene-1-carbonyl}-beta-alanine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F01 C21 97Y sing 1 n n N09 C23 97Y doub 2 n y N09 C18 97Y sing 3 n y O06 C37 97Y doub 4 n n C21 C18 97Y sing 5 n n C21 F02 97Y sing 6 n n C21 F03 97Y sing 7 n n C23 N07 97Y sing 8 n y C36 C37 97Y sing 9 n n C36 C35 97Y sing 10 n n C18 C22 97Y doub 11 n y C37 O05 97Y sing 12 n n O04 C34 97Y doub 13 n n C35 N11 97Y sing 14 n n N07 C22 97Y sing 15 n y N07 C19 97Y sing 16 n n C34 N11 97Y sing 17 n n C34 C31 97Y sing 18 n n C24 C19 97Y doub 19 n y C24 C28 97Y sing 20 n y C19 N10 97Y sing 21 n y C32 C31 97Y doub 22 n y C32 C25 97Y sing 23 n y C31 C33 97Y sing 24 n y C28 C20 97Y doub 25 n y C25 C17 97Y doub 26 n y N10 C27 97Y doub 27 n y C33 C26 97Y doub 28 n y C20 C27 97Y sing 29 n y C20 N08 97Y sing 30 n n C17 C26 97Y sing 31 n y C17 C13 97Y sing 32 n n C13 N08 97Y sing 33 n n C13 C12 97Y sing 34 n n C12 C16 97Y sing 35 n n C12 C15 97Y sing 36 n n C16 C14 97Y sing 37 n n C15 C14 97Y sing 38 n n C14 C30 97Y sing 39 n n C14 C29 97Y sing 40 n n C13 H1 97Y sing 41 n n C15 H2 97Y sing 42 n n C15 H3 97Y sing 43 n n C22 H4 97Y sing 44 n n C24 H5 97Y sing 45 n n C26 H6 97Y sing 46 n n C28 H7 97Y sing 47 n n O05 H8 97Y sing 48 n n N08 H9 97Y sing 49 n n N11 H10 97Y sing 50 n n C12 H11 97Y sing 51 n n C16 H12 97Y sing 52 n n C16 H13 97Y sing 53 n n C23 H14 97Y sing 54 n n C25 H15 97Y sing 55 n n C27 H16 97Y sing 56 n n C29 H17 97Y sing 57 n n C29 H18 97Y sing 58 n n C29 H19 97Y sing 59 n n C30 H20 97Y sing 60 n n C30 H21 97Y sing 61 n n C30 H22 97Y sing 62 n n C32 H23 97Y sing 63 n n C33 H24 97Y sing 64 n n C35 H25 97Y sing 65 n n C35 H26 97Y sing 66 n n C36 H27 97Y sing 67 n n C36 H28 97Y sing 68 n n # _atom_sites.entry_id 6KJV _atom_sites.fract_transf_matrix[1][1] 0.015378 _atom_sites.fract_transf_matrix[1][2] 0.004552 _atom_sites.fract_transf_matrix[1][3] 0.000226 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015269 _atom_sites.fract_transf_matrix[2][3] 0.000452 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 97Y A 1 2001 1201 97Y LIG . D 3 OLC A 1 2002 1301 OLC OLC . E 2 97Y B 1 2001 1201 97Y LIG . F 3 OLC B 1 2002 1302 OLC OLC . G 4 HOH A 1 3001 1 HOH HOH . G 4 HOH A 2 3002 2 HOH HOH . G 4 HOH A 3 3003 8 HOH HOH . G 4 HOH A 4 3004 5 HOH HOH . G 4 HOH A 5 3005 3 HOH HOH . G 4 HOH A 6 3006 4 HOH HOH . H 4 HOH B 1 3001 7 HOH HOH . H 4 HOH B 2 3002 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 97Y . . . E 2 54.458 9.144 53.262 1 54.91 ? C13 97Y 2001 B 1 HETATM 2 C C15 97Y . . . E 2 55.149 8.999 50.86 1 59.74 ? C15 97Y 2001 B 1 HETATM 3 C C17 97Y . . . E 2 53.405 8.512 54.188 1 61.08 ? C17 97Y 2001 B 1 HETATM 4 C C20 97Y . . . E 2 54.522 11.513 54.249 1 58.59 ? C20 97Y 2001 B 1 HETATM 5 C C21 97Y . . . E 2 54.637 17.792 58.515 1 73.47 ? C21 97Y 2001 B 1 HETATM 6 C C22 97Y . . . E 2 54.624 15.631 57.093 1 60.11 ? C22 97Y 2001 B 1 HETATM 7 C C24 97Y . . . E 2 55.279 12.057 56.464 1 59.36 ? C24 97Y 2001 B 1 HETATM 8 C C26 97Y . . . E 2 52.063 8.601 53.858 1 68.06 ? C26 97Y 2001 B 1 HETATM 9 C C28 97Y . . . E 2 55.102 11.122 55.454 1 56.77 ? C28 97Y 2001 B 1 HETATM 10 F F01 97Y . . . E 2 54.46 18.003 59.847 1 81.44 ? F01 97Y 2001 B 1 HETATM 11 F F02 97Y . . . E 2 55.667 18.555 58.059 1 75.13 ? F02 97Y 2001 B 1 HETATM 12 F F03 97Y . . . E 2 53.503 18.133 57.843 1 80.97 ? F03 97Y 2001 B 1 HETATM 13 O O04 97Y . . . E 2 50.758 6.219 57.745 1 112.71 ? O04 97Y 2001 B 1 HETATM 14 O O05 97Y . . . E 2 45.551 7.479 56.721 1 138.56 ? O05 97Y 2001 B 1 HETATM 15 O O06 97Y . . . E 2 45.204 7.345 58.882 1 134.2 ? O06 97Y 2001 B 1 HETATM 16 N N07 97Y . . . E 2 55.03 14.39 57.252 1 56.72 ? N07 97Y 2001 B 1 HETATM 17 N N08 97Y . . . E 2 54.298 10.6 53.137 1 53.86 ? N08 97Y 2001 B 1 HETATM 18 N N09 97Y . . . E 2 55.518 15.447 59.063 1 72.56 ? N09 97Y 2001 B 1 HETATM 19 N N10 97Y . . . E 2 54.335 13.705 55.101 1 54.53 ? N10 97Y 2001 B 1 HETATM 20 N N11 97Y . . . E 2 49.054 6.67 56.281 1 98.29 ? N11 97Y 2001 B 1 HETATM 21 C C12 97Y . . . E 2 54.203 8.552 51.941 1 57.51 ? C12 97Y 2001 B 1 HETATM 22 C C14 97Y . . . E 2 55.309 7.551 50.479 1 66.66 ? C14 97Y 2001 B 1 HETATM 23 C C16 97Y . . . E 2 54.76 7.165 51.831 1 55.51 ? C16 97Y 2001 B 1 HETATM 24 C C18 97Y . . . E 2 54.932 16.316 58.256 1 67.15 ? C18 97Y 2001 B 1 HETATM 25 C C19 97Y . . . E 2 54.88 13.365 56.252 1 56.63 ? C19 97Y 2001 B 1 HETATM 26 C C23 97Y . . . E 2 55.575 14.286 58.448 1 66.26 ? C23 97Y 2001 B 1 HETATM 27 C C25 97Y . . . E 2 53.8 7.824 55.325 1 75 ? C25 97Y 2001 B 1 HETATM 28 C C27 97Y . . . E 2 54.156 12.84 54.134 1 52.49 ? C27 97Y 2001 B 1 HETATM 29 C C29 97Y . . . E 2 54.382 7.159 49.331 1 75.97 ? C29 97Y 2001 B 1 HETATM 30 C C30 97Y . . . E 2 56.757 7.095 50.303 1 62.13 ? C30 97Y 2001 B 1 HETATM 31 C C31 97Y . . . E 2 51.497 7.347 55.821 1 78.55 ? C31 97Y 2001 B 1 HETATM 32 C C32 97Y . . . E 2 52.845 7.245 56.14 1 69.68 ? C32 97Y 2001 B 1 HETATM 33 C C33 97Y . . . E 2 51.107 8.023 54.674 1 70.66 ? C33 97Y 2001 B 1 HETATM 34 C C34 97Y . . . E 2 50.434 6.701 56.709 1 93.87 ? C34 97Y 2001 B 1 HETATM 35 C C35 97Y . . . E 2 48.06 6.045 57.136 1 90.21 ? C35 97Y 2001 B 1 HETATM 36 C C36 97Y . . . E 2 47.473 7.053 58.112 1 113.54 ? C36 97Y 2001 B 1 HETATM 37 C C37 97Y . . . E 2 45.985 7.307 57.892 1 130.35 ? C37 97Y 2001 B 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 30 _model_server_stats.element_count 37 #