data_6KJV # _model_server_result.job_id fXvh8xOjdGgaipUk8qeX5A _model_server_result.datetime_utc '2024-11-11 04:21:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2001}' # _entry.id 6KJV # _exptl.entry_id 6KJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 515.527 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{4-[(R)-(3,3-dimethylcyclobutyl)({6-[4-(trifluoromethyl)-1H-imidazol-1-yl]pyridin-3-yl}amino)methyl]benzene-1-carbonyl}-beta-alanine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.53 _cell.angle_beta 90.34 _cell.angle_gamma 106.49 _cell.entry_id 6KJV _cell.length_a 65.03 _cell.length_b 68.3 _cell.length_c 83.43 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 226 1_555 A SG CYS 320 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 341 A CYS 317 1_555 A SG CYS 385 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 B SG CYS 93 B CYS 226 1_555 B SG CYS 320 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 341 B CYS 317 1_555 B SG CYS 385 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C26 H28 F3 N5 O3' _chem_comp.formula_weight 515.527 _chem_comp.id 97Y _chem_comp.mon_nstd_flag . _chem_comp.name N-{4-[(R)-(3,3-dimethylcyclobutyl)({6-[4-(trifluoromethyl)-1H-imidazol-1-yl]pyridin-3-yl}amino)methyl]benzene-1-carbonyl}-beta-alanine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F01 C21 97Y sing 1 n n N09 C23 97Y doub 2 n y N09 C18 97Y sing 3 n y O06 C37 97Y doub 4 n n C21 C18 97Y sing 5 n n C21 F02 97Y sing 6 n n C21 F03 97Y sing 7 n n C23 N07 97Y sing 8 n y C36 C37 97Y sing 9 n n C36 C35 97Y sing 10 n n C18 C22 97Y doub 11 n y C37 O05 97Y sing 12 n n O04 C34 97Y doub 13 n n C35 N11 97Y sing 14 n n N07 C22 97Y sing 15 n y N07 C19 97Y sing 16 n n C34 N11 97Y sing 17 n n C34 C31 97Y sing 18 n n C24 C19 97Y doub 19 n y C24 C28 97Y sing 20 n y C19 N10 97Y sing 21 n y C32 C31 97Y doub 22 n y C32 C25 97Y sing 23 n y C31 C33 97Y sing 24 n y C28 C20 97Y doub 25 n y C25 C17 97Y doub 26 n y N10 C27 97Y doub 27 n y C33 C26 97Y doub 28 n y C20 C27 97Y sing 29 n y C20 N08 97Y sing 30 n n C17 C26 97Y sing 31 n y C17 C13 97Y sing 32 n n C13 N08 97Y sing 33 n n C13 C12 97Y sing 34 n n C12 C16 97Y sing 35 n n C12 C15 97Y sing 36 n n C16 C14 97Y sing 37 n n C15 C14 97Y sing 38 n n C14 C30 97Y sing 39 n n C14 C29 97Y sing 40 n n C13 H1 97Y sing 41 n n C15 H2 97Y sing 42 n n C15 H3 97Y sing 43 n n C22 H4 97Y sing 44 n n C24 H5 97Y sing 45 n n C26 H6 97Y sing 46 n n C28 H7 97Y sing 47 n n O05 H8 97Y sing 48 n n N08 H9 97Y sing 49 n n N11 H10 97Y sing 50 n n C12 H11 97Y sing 51 n n C16 H12 97Y sing 52 n n C16 H13 97Y sing 53 n n C23 H14 97Y sing 54 n n C25 H15 97Y sing 55 n n C27 H16 97Y sing 56 n n C29 H17 97Y sing 57 n n C29 H18 97Y sing 58 n n C29 H19 97Y sing 59 n n C30 H20 97Y sing 60 n n C30 H21 97Y sing 61 n n C30 H22 97Y sing 62 n n C32 H23 97Y sing 63 n n C33 H24 97Y sing 64 n n C35 H25 97Y sing 65 n n C35 H26 97Y sing 66 n n C36 H27 97Y sing 67 n n C36 H28 97Y sing 68 n n # _atom_sites.entry_id 6KJV _atom_sites.fract_transf_matrix[1][1] 0.015378 _atom_sites.fract_transf_matrix[1][2] 0.004552 _atom_sites.fract_transf_matrix[1][3] 0.000226 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015269 _atom_sites.fract_transf_matrix[2][3] 0.000452 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 97Y A 1 2001 1201 97Y LIG . D 3 OLC A 1 2002 1301 OLC OLC . E 2 97Y B 1 2001 1201 97Y LIG . F 3 OLC B 1 2002 1302 OLC OLC . G 4 HOH A 1 3001 1 HOH HOH . G 4 HOH A 2 3002 2 HOH HOH . G 4 HOH A 3 3003 8 HOH HOH . G 4 HOH A 4 3004 5 HOH HOH . G 4 HOH A 5 3005 3 HOH HOH . G 4 HOH A 6 3006 4 HOH HOH . H 4 HOH B 1 3001 7 HOH HOH . H 4 HOH B 2 3002 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 97Y . . . C 2 22.388 32.792 30.032 1 57.25 ? C13 97Y 2001 A 1 HETATM 2 C C15 97Y . . . C 2 23.39 32.829 32.296 1 61.95 ? C15 97Y 2001 A 1 HETATM 3 C C17 97Y . . . C 2 21.333 33.457 29.131 1 61.78 ? C17 97Y 2001 A 1 HETATM 4 C C20 97Y . . . C 2 22.343 30.431 29.022 1 50.95 ? C20 97Y 2001 A 1 HETATM 5 C C21 97Y . . . C 2 22.46 24.162 24.706 1 75.88 ? C21 97Y 2001 A 1 HETATM 6 C C22 97Y . . . C 2 22.428 26.307 26.153 1 54.36 ? C22 97Y 2001 A 1 HETATM 7 C C24 97Y . . . C 2 23.172 29.853 26.839 1 50.16 ? C24 97Y 2001 A 1 HETATM 8 C C26 97Y . . . C 2 19.982 33.32 29.413 1 66.28 ? C26 97Y 2001 A 1 HETATM 9 C C28 97Y . . . C 2 22.994 30.793 27.844 1 53 ? C28 97Y 2001 A 1 HETATM 10 F F01 97Y . . . C 2 22.066 24.036 23.411 1 92.36 ? F01 97Y 2001 A 1 HETATM 11 F F02 97Y . . . C 2 23.569 23.406 24.927 1 71.45 ? F02 97Y 2001 A 1 HETATM 12 F F03 97Y . . . C 2 21.457 23.737 25.526 1 81.12 ? F03 97Y 2001 A 1 HETATM 13 O O04 97Y . . . C 2 18.767 35.884 25.611 1 116.13 ? O04 97Y 2001 A 1 HETATM 14 O O05 97Y . . . C 2 13.446 34.611 26.475 1 192.27 ? O05 97Y 2001 A 1 HETATM 15 O O06 97Y . . . C 2 13.171 34.712 24.304 1 158.24 ? O06 97Y 2001 A 1 HETATM 16 N N07 97Y . . . C 2 22.857 27.544 26.022 1 48.41 ? N07 97Y 2001 A 1 HETATM 17 N N08 97Y . . . C 2 22.118 31.352 30.125 1 53.18 ? N08 97Y 2001 A 1 HETATM 18 N N09 97Y . . . C 2 23.396 26.498 24.22 1 56.41 ? N09 97Y 2001 A 1 HETATM 19 N N10 97Y . . . C 2 22.091 28.25 28.15 1 43.16 ? N10 97Y 2001 A 1 HETATM 20 N N11 97Y . . . C 2 17.018 35.242 26.933 1 123.1 ? N11 97Y 2001 A 1 HETATM 21 C C12 97Y . . . C 2 22.277 33.307 31.402 1 57.92 ? C12 97Y 2001 A 1 HETATM 22 C C14 97Y . . . C 2 23.475 34.238 32.82 1 59.15 ? C14 97Y 2001 A 1 HETATM 23 C C16 97Y . . . C 2 22.8 34.705 31.553 1 54.67 ? C16 97Y 2001 A 1 HETATM 24 C C18 97Y . . . C 2 22.768 25.63 24.996 1 61.28 ? C18 97Y 2001 A 1 HETATM 25 C C19 97Y . . . C 2 22.699 28.567 27.025 1 45.01 ? C19 97Y 2001 A 1 HETATM 26 C C23 97Y . . . C 2 23.447 27.653 24.848 1 53.57 ? C23 97Y 2001 A 1 HETATM 27 C C25 97Y . . . C 2 21.745 34.192 28.029 1 66.32 ? C25 97Y 2001 A 1 HETATM 28 C C27 97Y . . . C 2 21.909 29.122 29.112 1 48.08 ? C27 97Y 2001 A 1 HETATM 29 C C29 97Y . . . C 2 22.6 34.43 34.054 1 55.98 ? C29 97Y 2001 A 1 HETATM 30 C C30 97Y . . . C 2 24.903 34.759 32.968 1 60.96 ? C30 97Y 2001 A 1 HETATM 31 C C31 97Y . . . C 2 19.458 34.657 27.493 1 88.79 ? C31 97Y 2001 A 1 HETATM 32 C C32 97Y . . . C 2 20.808 34.794 27.211 1 74.86 ? C32 97Y 2001 A 1 HETATM 33 C C33 97Y . . . C 2 19.042 33.923 28.596 1 78.02 ? C33 97Y 2001 A 1 HETATM 34 C C34 97Y . . . C 2 18.417 35.318 26.594 1 106.41 ? C34 97Y 2001 A 1 HETATM 35 C C35 97Y . . . C 2 16.052 35.875 26.054 1 125.22 ? C35 97Y 2001 A 1 HETATM 36 C C36 97Y . . . C 2 15.432 34.839 25.13 1 145.67 ? C36 97Y 2001 A 1 HETATM 37 C C37 97Y . . . C 2 13.925 34.714 25.315 1 162.25 ? C37 97Y 2001 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 37 #