data_6KJV # _model_server_result.job_id XFs9T2k2KkC7ysaI4XJ9Kw _model_server_result.datetime_utc '2024-11-27 01:24:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2002}' # _entry.id 6KJV # _exptl.entry_id 6KJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.53 _cell.angle_beta 90.34 _cell.angle_gamma 106.49 _cell.entry_id 6KJV _cell.length_a 65.03 _cell.length_b 68.3 _cell.length_c 83.43 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 226 1_555 A SG CYS 320 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 341 A CYS 317 1_555 A SG CYS 385 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 B SG CYS 93 B CYS 226 1_555 B SG CYS 320 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 341 B CYS 317 1_555 B SG CYS 385 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 305 n n C10 C9 OLC doub 306 n n C10 C11 OLC sing 307 n n C9 C8 OLC sing 308 n n C17 C16 OLC sing 309 z n C11 C12 OLC sing 310 n n C8 C7 OLC sing 311 n n C24 C22 OLC sing 312 n n C24 O25 OLC sing 313 n n C16 C15 OLC sing 314 n n C12 C13 OLC sing 315 n n C7 C6 OLC sing 316 n n C15 C14 OLC sing 317 n n C13 C14 OLC sing 318 n n C6 C5 OLC sing 319 n n C5 C4 OLC sing 320 n n C4 C3 OLC sing 321 n n C3 C2 OLC sing 322 n n C2 C1 OLC sing 323 n n C21 C22 OLC sing 324 n n C21 O20 OLC sing 325 n n C1 O19 OLC doub 326 n n C1 O20 OLC sing 327 n n C22 O23 OLC sing 328 n n C18 H18 OLC sing 329 n n C18 H18A OLC sing 330 n n C18 H18B OLC sing 331 n n C10 H10 OLC sing 332 n n C9 H9 OLC sing 333 n n C17 H17 OLC sing 334 n n C17 H17A OLC sing 335 n n C11 H11 OLC sing 336 n n C11 H11A OLC sing 337 n n C8 H8 OLC sing 338 n n C8 H8A OLC sing 339 n n C24 H24 OLC sing 340 n n C24 H24A OLC sing 341 n n C16 H16 OLC sing 342 n n C16 H16A OLC sing 343 n n C12 H12 OLC sing 344 n n C12 H12A OLC sing 345 n n C7 H7 OLC sing 346 n n C7 H7A OLC sing 347 n n C15 H15 OLC sing 348 n n C15 H15A OLC sing 349 n n C13 H13 OLC sing 350 n n C13 H13A OLC sing 351 n n C6 H6 OLC sing 352 n n C6 H6A OLC sing 353 n n C14 H14 OLC sing 354 n n C14 H14A OLC sing 355 n n C5 H5 OLC sing 356 n n C5 H5A OLC sing 357 n n C4 H4 OLC sing 358 n n C4 H4A OLC sing 359 n n C3 H3 OLC sing 360 n n C3 H3A OLC sing 361 n n C2 H2 OLC sing 362 n n C2 H2A OLC sing 363 n n C21 H21 OLC sing 364 n n C21 H21A OLC sing 365 n n C22 H22 OLC sing 366 n n O25 HO25 OLC sing 367 n n O23 HO23 OLC sing 368 n n # _atom_sites.entry_id 6KJV _atom_sites.fract_transf_matrix[1][1] 0.015378 _atom_sites.fract_transf_matrix[1][2] 0.004552 _atom_sites.fract_transf_matrix[1][3] 0.000226 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015269 _atom_sites.fract_transf_matrix[2][3] 0.000452 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 97Y A 1 2001 1201 97Y LIG . D 3 OLC A 1 2002 1301 OLC OLC . E 2 97Y B 1 2001 1201 97Y LIG . F 3 OLC B 1 2002 1302 OLC OLC . G 4 HOH A 1 3001 1 HOH HOH . G 4 HOH A 2 3002 2 HOH HOH . G 4 HOH A 3 3003 8 HOH HOH . G 4 HOH A 4 3004 5 HOH HOH . G 4 HOH A 5 3005 3 HOH HOH . G 4 HOH A 6 3006 4 HOH HOH . H 4 HOH B 1 3001 7 HOH HOH . H 4 HOH B 2 3002 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . D 3 18.834 29.522 47.124 1 66.07 ? C18 OLC 2002 A 1 HETATM 2 C C10 OLC . . . D 3 23.771 26.357 39.737 1 78.04 ? C10 OLC 2002 A 1 HETATM 3 C C9 OLC . . . D 3 24.341 25.174 39.863 1 83.01 ? C9 OLC 2002 A 1 HETATM 4 C C17 OLC . . . D 3 20.173 28.796 47.272 1 85.89 ? C17 OLC 2002 A 1 HETATM 5 C C11 OLC . . . D 3 23.957 27.401 40.838 1 71.4 ? C11 OLC 2002 A 1 HETATM 6 C C8 OLC . . . D 3 24.164 24.122 38.771 1 98.99 ? C8 OLC 2002 A 1 HETATM 7 C C24 OLC . . . D 3 23.627 25.543 30.493 1 80.69 ? C24 OLC 2002 A 1 HETATM 8 C C16 OLC . . . D 3 21.151 29.167 46.157 1 100.87 ? C16 OLC 2002 A 1 HETATM 9 C C12 OLC . . . D 3 22.658 27.704 41.588 1 69.84 ? C12 OLC 2002 A 1 HETATM 10 C C7 OLC . . . D 3 24.351 22.697 39.295 1 86.08 ? C7 OLC 2002 A 1 HETATM 11 C C15 OLC . . . D 3 21.59 27.973 45.31 1 106.74 ? C15 OLC 2002 A 1 HETATM 12 C C13 OLC . . . D 3 22.853 27.728 43.105 1 63.69 ? C13 OLC 2002 A 1 HETATM 13 C C6 OLC . . . D 3 23.72 21.627 38.403 1 66.61 ? C6 OLC 2002 A 1 HETATM 14 C C14 OLC . . . D 3 21.647 28.335 43.824 1 78.97 ? C14 OLC 2002 A 1 HETATM 15 C C5 OLC . . . D 3 23.51 22.085 36.958 1 67.7 ? C5 OLC 2002 A 1 HETATM 16 C C4 OLC . . . D 3 23.85 20.983 35.956 1 76.75 ? C4 OLC 2002 A 1 HETATM 17 C C3 OLC . . . D 3 24.974 21.366 34.994 1 76.81 ? C3 OLC 2002 A 1 HETATM 18 C C2 OLC . . . D 3 24.483 21.486 33.551 1 60.93 ? C2 OLC 2002 A 1 HETATM 19 C C21 OLC . . . D 3 24.517 23.235 30.629 1 79.24 ? C21 OLC 2002 A 1 HETATM 20 C C1 OLC . . . D 3 24.908 22.79 32.887 1 94.86 ? C1 OLC 2002 A 1 HETATM 21 C C22 OLC . . . D 3 23.833 24.25 29.714 1 67.93 ? C22 OLC 2002 A 1 HETATM 22 O O19 OLC . . . D 3 25.931 23.308 33.175 1 78.74 ? O19 OLC 2002 A 1 HETATM 23 O O25 OLC . . . D 3 22.998 25.233 31.703 1 102.17 ? O25 OLC 2002 A 1 HETATM 24 O O23 OLC . . . D 3 24.65 24.502 28.599 1 59.36 ? O23 OLC 2002 A 1 HETATM 25 O O20 OLC . . . D 3 24.067 23.386 31.945 1 116.88 ? O20 OLC 2002 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #