data_6KJV # _model_server_result.job_id X_bZxgRbJ6l5eYn9moZKcA _model_server_result.datetime_utc '2024-11-12 18:33:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2002}' # _entry.id 6KJV # _exptl.entry_id 6KJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.53 _cell.angle_beta 90.34 _cell.angle_gamma 106.49 _cell.entry_id 6KJV _cell.length_a 65.03 _cell.length_b 68.3 _cell.length_c 83.43 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 226 1_555 A SG CYS 320 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 341 A CYS 317 1_555 A SG CYS 385 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 B SG CYS 93 B CYS 226 1_555 B SG CYS 320 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 341 B CYS 317 1_555 B SG CYS 385 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 305 n n C10 C9 OLC doub 306 n n C10 C11 OLC sing 307 n n C9 C8 OLC sing 308 n n C17 C16 OLC sing 309 z n C11 C12 OLC sing 310 n n C8 C7 OLC sing 311 n n C24 C22 OLC sing 312 n n C24 O25 OLC sing 313 n n C16 C15 OLC sing 314 n n C12 C13 OLC sing 315 n n C7 C6 OLC sing 316 n n C15 C14 OLC sing 317 n n C13 C14 OLC sing 318 n n C6 C5 OLC sing 319 n n C5 C4 OLC sing 320 n n C4 C3 OLC sing 321 n n C3 C2 OLC sing 322 n n C2 C1 OLC sing 323 n n C21 C22 OLC sing 324 n n C21 O20 OLC sing 325 n n C1 O19 OLC doub 326 n n C1 O20 OLC sing 327 n n C22 O23 OLC sing 328 n n C18 H18 OLC sing 329 n n C18 H18A OLC sing 330 n n C18 H18B OLC sing 331 n n C10 H10 OLC sing 332 n n C9 H9 OLC sing 333 n n C17 H17 OLC sing 334 n n C17 H17A OLC sing 335 n n C11 H11 OLC sing 336 n n C11 H11A OLC sing 337 n n C8 H8 OLC sing 338 n n C8 H8A OLC sing 339 n n C24 H24 OLC sing 340 n n C24 H24A OLC sing 341 n n C16 H16 OLC sing 342 n n C16 H16A OLC sing 343 n n C12 H12 OLC sing 344 n n C12 H12A OLC sing 345 n n C7 H7 OLC sing 346 n n C7 H7A OLC sing 347 n n C15 H15 OLC sing 348 n n C15 H15A OLC sing 349 n n C13 H13 OLC sing 350 n n C13 H13A OLC sing 351 n n C6 H6 OLC sing 352 n n C6 H6A OLC sing 353 n n C14 H14 OLC sing 354 n n C14 H14A OLC sing 355 n n C5 H5 OLC sing 356 n n C5 H5A OLC sing 357 n n C4 H4 OLC sing 358 n n C4 H4A OLC sing 359 n n C3 H3 OLC sing 360 n n C3 H3A OLC sing 361 n n C2 H2 OLC sing 362 n n C2 H2A OLC sing 363 n n C21 H21 OLC sing 364 n n C21 H21A OLC sing 365 n n C22 H22 OLC sing 366 n n O25 HO25 OLC sing 367 n n O23 HO23 OLC sing 368 n n # _atom_sites.entry_id 6KJV _atom_sites.fract_transf_matrix[1][1] 0.015378 _atom_sites.fract_transf_matrix[1][2] 0.004552 _atom_sites.fract_transf_matrix[1][3] 0.000226 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015269 _atom_sites.fract_transf_matrix[2][3] 0.000452 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 97Y A 1 2001 1201 97Y LIG . D 3 OLC A 1 2002 1301 OLC OLC . E 2 97Y B 1 2001 1201 97Y LIG . F 3 OLC B 1 2002 1302 OLC OLC . G 4 HOH A 1 3001 1 HOH HOH . G 4 HOH A 2 3002 2 HOH HOH . G 4 HOH A 3 3003 8 HOH HOH . G 4 HOH A 4 3004 5 HOH HOH . G 4 HOH A 5 3005 3 HOH HOH . G 4 HOH A 6 3006 4 HOH HOH . H 4 HOH B 1 3001 7 HOH HOH . H 4 HOH B 2 3002 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . F 3 50.605 12.581 36.293 1 58.36 ? C18 OLC 2002 B 1 HETATM 2 C C10 OLC . . . F 3 55.733 15.098 42.767 1 80.68 ? C10 OLC 2002 B 1 HETATM 3 C C9 OLC . . . F 3 56.816 15.825 42.981 1 97.4 ? C9 OLC 2002 B 1 HETATM 4 C C17 OLC . . . F 3 51.939 12.894 35.612 1 58.86 ? C17 OLC 2002 B 1 HETATM 5 C C11 OLC . . . F 3 55.725 14.015 41.682 1 80.52 ? C11 OLC 2002 B 1 HETATM 6 C C8 OLC . . . F 3 56.816 16.897 44.069 1 101.95 ? C8 OLC 2002 B 1 HETATM 7 C C24 OLC . . . F 3 55.179 16.435 52.342 1 70.3 ? C24 OLC 2002 B 1 HETATM 8 C C16 OLC . . . F 3 53.134 12.753 36.558 1 70.63 ? C16 OLC 2002 B 1 HETATM 9 C C12 OLC . . . F 3 54.354 13.825 41.026 1 86.19 ? C12 OLC 2002 B 1 HETATM 10 C C7 OLC . . . F 3 56.833 18.317 43.499 1 95.88 ? C7 OLC 2002 B 1 HETATM 11 C C15 OLC . . . F 3 53.099 13.772 37.698 1 92.13 ? C15 OLC 2002 B 1 HETATM 12 C C13 OLC . . . F 3 54.422 12.989 39.746 1 74.37 ? C13 OLC 2002 B 1 HETATM 13 C C6 OLC . . . F 3 57.232 19.358 44.544 1 107.8 ? C6 OLC 2002 B 1 HETATM 14 C C14 OLC . . . F 3 54.418 13.844 38.474 1 82.64 ? C14 OLC 2002 B 1 HETATM 15 C C5 OLC . . . F 3 56.124 20.377 44.804 1 78.57 ? C5 OLC 2002 B 1 HETATM 16 C C4 OLC . . . F 3 55.472 20.18 46.17 1 73.14 ? C4 OLC 2002 B 1 HETATM 17 C C3 OLC . . . F 3 56.467 20.321 47.323 1 88.21 ? C3 OLC 2002 B 1 HETATM 18 C C2 OLC . . . F 3 56.449 19.092 48.238 1 93.82 ? C2 OLC 2002 B 1 HETATM 19 C C21 OLC . . . F 3 56.985 17.971 51.555 1 98.25 ? C21 OLC 2002 B 1 HETATM 20 C C1 OLC . . . F 3 57.082 19.33 49.609 1 92.64 ? C1 OLC 2002 B 1 HETATM 21 C C22 OLC . . . F 3 56.024 17.655 52.703 1 76.11 ? C22 OLC 2002 B 1 HETATM 22 O O19 OLC . . . F 3 58.149 19.832 49.697 1 85.68 ? O19 OLC 2002 B 1 HETATM 23 O O25 OLC . . . F 3 54.995 16.408 50.955 1 74.01 ? O25 OLC 2002 B 1 HETATM 24 O O23 OLC . . . F 3 56.745 17.393 53.879 1 58.46 ? O23 OLC 2002 B 1 HETATM 25 O O20 OLC . . . F 3 56.392 18.967 50.772 1 107.19 ? O20 OLC 2002 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #