data_6KK2 # _model_server_result.job_id 2bdX1naGqX7IBB27ELZ2BQ _model_server_result.datetime_utc '2025-01-07 05:29:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kk2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6KK2 # _exptl.entry_id 6KK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 658.835 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(10~{S},17~{S},20~{S})-17,20-bis(4-azanylbutyl)-4,9,16,19,22-pentakis(oxidanylidene)-3,8,15,18,21-pentazabicyclo[22.2.2]octacosa-1(27),24(28),25-trien-10-yl]guanidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KK2 _cell.length_a 42.413 _cell.length_b 42.413 _cell.length_c 215.689 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 144 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 143 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 144 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 143 _struct_conn.ptnr2_symmetry 8_444 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.063 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C32 H54 N10 O5' _chem_comp.formula_weight 658.835 _chem_comp.id D9U _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(10~{S},17~{S},20~{S})-17,20-bis(4-azanylbutyl)-4,9,16,19,22-pentakis(oxidanylidene)-3,8,15,18,21-pentazabicyclo[22.2.2]octacosa-1(27),24(28),25-trien-10-yl]guanidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C08 C09 D9U sing 83 n n C08 C06 D9U sing 84 n n O07 C06 D9U doub 85 n n C09 C10 D9U sing 86 n n C06 N05 D9U sing 87 n n C10 N11 D9U sing 88 n n N11 C12 D9U sing 89 n n N18 C16 D9U doub 90 n n N05 C04 D9U sing 91 n n C12 C14 D9U sing 92 n n C12 O13 D9U doub 93 n n C14 C19 D9U sing 94 n n C14 N15 D9U sing 95 n n C16 N15 D9U sing 96 n n C16 N17 D9U sing 97 n n C04 C03 D9U sing 98 n n C19 C20 D9U sing 99 n n C21 C20 D9U sing 100 n n C21 C22 D9U sing 101 n n C03 C02 D9U doub 102 n y C03 C47 D9U sing 103 n y C02 C01 D9U sing 104 n y C47 C46 D9U doub 105 n y C22 N23 D9U sing 106 n n C01 C45 D9U doub 107 n y C46 C45 D9U sing 108 n y N23 C24 D9U sing 109 n n O43 C42 D9U doub 110 n n C45 C44 D9U sing 111 n n O25 C24 D9U doub 112 n n C24 C26 D9U sing 113 n n C42 C44 D9U sing 114 n n C42 N41 D9U sing 115 n n O34 C33 D9U doub 116 n n C33 C35 D9U sing 117 n n C33 N32 D9U sing 118 n n C35 N41 D9U sing 119 n n C35 C36 D9U sing 120 n n C26 N32 D9U sing 121 n n C26 C27 D9U sing 122 n n C36 C37 D9U sing 123 n n C27 C28 D9U sing 124 n n C37 C38 D9U sing 125 n n C38 C39 D9U sing 126 n n C39 N40 D9U sing 127 n n C28 C29 D9U sing 128 n n C29 C30 D9U sing 129 n n C30 N31 D9U sing 130 n n C10 H101 D9U sing 131 n n C10 H102 D9U sing 132 n n C20 H202 D9U sing 133 n n C20 H201 D9U sing 134 n n C21 H211 D9U sing 135 n n C21 H212 D9U sing 136 n n C22 H221 D9U sing 137 n n C22 H222 D9U sing 138 n n C26 H261 D9U sing 139 n n C28 H282 D9U sing 140 n n C28 H281 D9U sing 141 n n C01 H011 D9U sing 142 n n C02 H021 D9U sing 143 n n C04 H042 D9U sing 144 n n C04 H041 D9U sing 145 n n C08 H082 D9U sing 146 n n C08 H081 D9U sing 147 n n C09 H091 D9U sing 148 n n C09 H092 D9U sing 149 n n C14 H141 D9U sing 150 n n C19 H192 D9U sing 151 n n C19 H191 D9U sing 152 n n C27 H271 D9U sing 153 n n C27 H272 D9U sing 154 n n C29 H291 D9U sing 155 n n C29 H292 D9U sing 156 n n C30 H302 D9U sing 157 n n C30 H301 D9U sing 158 n n C35 H351 D9U sing 159 n n C36 H361 D9U sing 160 n n C36 H362 D9U sing 161 n n C37 H372 D9U sing 162 n n C37 H371 D9U sing 163 n n C38 H381 D9U sing 164 n n C38 H382 D9U sing 165 n n C39 H391 D9U sing 166 n n C39 H392 D9U sing 167 n n C44 H441 D9U sing 168 n n C44 H442 D9U sing 169 n n C46 H461 D9U sing 170 n n C47 H471 D9U sing 171 n n N05 H051 D9U sing 172 n n N11 H111 D9U sing 173 n n N15 H151 D9U sing 174 n n N17 H1 D9U sing 175 n n N17 H171 D9U sing 176 n n N18 H182 D9U sing 177 n n N23 H231 D9U sing 178 n n N31 H2 D9U sing 179 n n N31 H312 D9U sing 180 n n N32 H321 D9U sing 181 n n N40 H401 D9U sing 182 n n N40 H3 D9U sing 183 n n N41 H411 D9U sing 184 n n # _atom_sites.entry_id 6KK2 _atom_sites.fract_transf_matrix[1][1] 0.023578 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004636 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 D9U B 1 201 201 D9U LIG . D 4 HOH A 1 101 25 HOH HOH . D 4 HOH A 2 102 2 HOH HOH . D 4 HOH A 3 103 11 HOH HOH . D 4 HOH A 4 104 10 HOH HOH . D 4 HOH A 5 105 35 HOH HOH . D 4 HOH A 6 106 8 HOH HOH . D 4 HOH A 7 107 27 HOH HOH . D 4 HOH A 8 108 29 HOH HOH . E 4 HOH B 1 301 32 HOH HOH . E 4 HOH B 2 302 18 HOH HOH . E 4 HOH B 3 303 5 HOH HOH . E 4 HOH B 4 304 26 HOH HOH . E 4 HOH B 5 305 34 HOH HOH . E 4 HOH B 6 306 23 HOH HOH . E 4 HOH B 7 307 1 HOH HOH . E 4 HOH B 8 308 3 HOH HOH . E 4 HOH B 9 309 14 HOH HOH . E 4 HOH B 10 310 22 HOH HOH . E 4 HOH B 11 311 20 HOH HOH . E 4 HOH B 12 312 33 HOH HOH . E 4 HOH B 13 313 4 HOH HOH . E 4 HOH B 14 314 16 HOH HOH . E 4 HOH B 15 315 7 HOH HOH . E 4 HOH B 16 316 9 HOH HOH . E 4 HOH B 17 317 13 HOH HOH . E 4 HOH B 18 318 19 HOH HOH . E 4 HOH B 19 319 24 HOH HOH . E 4 HOH B 20 320 15 HOH HOH . E 4 HOH B 21 321 6 HOH HOH . E 4 HOH B 22 322 28 HOH HOH . E 4 HOH B 23 323 30 HOH HOH . E 4 HOH B 24 324 36 HOH HOH . E 4 HOH B 25 325 38 HOH HOH . E 4 HOH B 26 326 21 HOH HOH . E 4 HOH B 27 327 17 HOH HOH . E 4 HOH B 28 328 37 HOH HOH . E 4 HOH B 29 329 12 HOH HOH . E 4 HOH B 30 330 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 D9U . . . C 3 -5.568 10.139 -20.989 1 79.09 ? C10 D9U 201 B 1 HETATM 2 C C20 D9U . . . C 3 -7.587 5.017 -18.041 1 60.38 ? C20 D9U 201 B 1 HETATM 3 C C21 D9U . . . C 3 -9.102 4.655 -18.059 1 60.75 ? C21 D9U 201 B 1 HETATM 4 C C22 D9U . . . C 3 -9.799 5.443 -16.916 1 62.3 ? C22 D9U 201 B 1 HETATM 5 C C24 D9U . . . C 3 -8.634 5.445 -14.635 1 63.83 ? C24 D9U 201 B 1 HETATM 6 C C26 D9U . . . C 3 -8.331 4.732 -13.324 1 54.98 ? C26 D9U 201 B 1 HETATM 7 C C28 D9U . . . C 3 -8.304 4.928 -10.837 1 50.75 ? C28 D9U 201 B 1 HETATM 8 C C01 D9U . . . C 3 -3.053 7.748 -16.189 1 68.64 ? C01 D9U 201 B 1 HETATM 9 C C02 D9U . . . C 3 -2.578 8.28 -17.38 1 71.13 ? C02 D9U 201 B 1 HETATM 10 C C03 D9U . . . C 3 -1.279 7.996 -17.78 1 72.96 ? C03 D9U 201 B 1 HETATM 11 C C04 D9U . . . C 3 -0.741 8.573 -19.088 1 75.52 ? C04 D9U 201 B 1 HETATM 12 C C06 D9U . . . C 3 -2.277 8.618 -21.094 1 83.12 ? C06 D9U 201 B 1 HETATM 13 C C08 D9U . . . C 3 -3.399 9.29 -21.902 1 82.63 ? C08 D9U 201 B 1 HETATM 14 C C09 D9U . . . C 3 -4.061 10.396 -21.069 1 81.06 ? C09 D9U 201 B 1 HETATM 15 C C12 D9U . . . C 3 -5.844 8.079 -19.56 1 76.41 ? C12 D9U 201 B 1 HETATM 16 C C14 D9U . . . C 3 -6.108 6.582 -19.404 1 69.71 ? C14 D9U 201 B 1 HETATM 17 C C16 D9U . . . C 3 -3.833 5.521 -19.178 1 62.9 ? C16 D9U 201 B 1 HETATM 18 C C19 D9U . . . C 3 -7.45 6.411 -18.672 1 66.3 ? C19 D9U 201 B 1 HETATM 19 C C27 D9U . . . C 3 -8.789 5.576 -12.141 1 53.67 ? C27 D9U 201 B 1 HETATM 20 C C29 D9U . . . C 3 -9.137 3.685 -10.5 1 51.31 ? C29 D9U 201 B 1 HETATM 21 C C30 D9U . . . C 3 -9.281 3.552 -8.976 1 46.01 ? C30 D9U 201 B 1 HETATM 22 C C33 D9U . . . C 3 -6.295 3.219 -13.558 1 50.78 ? C33 D9U 201 B 1 HETATM 23 C C35 D9U . . . C 3 -4.771 3.035 -13.432 1 56.54 ? C35 D9U 201 B 1 HETATM 24 C C36 D9U . . . C 3 -4.481 2.252 -12.159 1 59.32 ? C36 D9U 201 B 1 HETATM 25 C C37 D9U . . . C 3 -2.984 2.336 -11.875 1 62.03 ? C37 D9U 201 B 1 HETATM 26 C C38 D9U . . . C 3 -2.453 0.917 -11.682 1 61.38 ? C38 D9U 201 B 1 HETATM 27 C C39 D9U . . . C 3 -0.979 0.956 -11.287 1 63.23 ? C39 D9U 201 B 1 HETATM 28 C C42 D9U . . . C 3 -3.402 4.967 -14.366 1 68.44 ? C42 D9U 201 B 1 HETATM 29 C C44 D9U . . . C 3 -2.759 6.35 -14.09 1 69.36 ? C44 D9U 201 B 1 HETATM 30 C C45 D9U . . . C 3 -2.232 6.936 -15.409 1 70.49 ? C45 D9U 201 B 1 HETATM 31 C C46 D9U . . . C 3 -0.936 6.651 -15.807 1 70.89 ? C46 D9U 201 B 1 HETATM 32 C C47 D9U . . . C 3 -0.458 7.186 -17 1 72.5 ? C47 D9U 201 B 1 HETATM 33 N N05 D9U . . . C 3 -1.816 9.218 -19.841 1 80.14 ? N05 D9U 201 B 1 HETATM 34 N N11 D9U . . . C 3 -5.82 8.711 -20.873 1 77.36 ? N11 D9U 201 B 1 HETATM 35 N N15 D9U . . . C 3 -5.06 6.043 -18.577 1 63.55 ? N15 D9U 201 B 1 HETATM 36 N N17 D9U . . . C 3 -2.936 5.068 -18.432 1 62.12 ? N17 D9U 201 B 1 HETATM 37 N N18 D9U . . . C 3 -3.638 5.512 -20.629 1 57.6 ? N18 D9U 201 B 1 HETATM 38 N N23 D9U . . . C 3 -9.489 4.798 -15.633 1 60.01 ? N23 D9U 201 B 1 HETATM 39 N N31 D9U . . . C 3 -8.674 2.31 -8.508 1 43.32 ? N31 D9U 201 B 1 HETATM 40 N N32 D9U . . . C 3 -6.89 4.525 -13.225 1 55.02 ? N32 D9U 201 B 1 HETATM 41 N N40 D9U . . . C 3 -0.834 0.661 -9.867 1 61.32 ? N40 D9U 201 B 1 HETATM 42 N N41 D9U . . . C 3 -4.134 4.321 -13.276 1 59.21 ? N41 D9U 201 B 1 HETATM 43 O O07 D9U . . . C 3 -1.78 7.615 -21.485 1 85 ? O07 D9U 201 B 1 HETATM 44 O O13 D9U . . . C 3 -5.658 8.735 -18.587 1 78.68 ? O13 D9U 201 B 1 HETATM 45 O O25 D9U . . . C 3 -8.164 6.516 -14.84 1 70.9 ? O25 D9U 201 B 1 HETATM 46 O O34 D9U . . . C 3 -6.99 2.319 -13.909 1 43.17 ? O34 D9U 201 B 1 HETATM 47 O O43 D9U . . . C 3 -3.314 4.449 -15.44 1 69.66 ? O43 D9U 201 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 47 #