data_6KK4 # _model_server_result.job_id oReeanndAIOQL2b55gFOtA _model_server_result.datetime_utc '2024-11-08 19:16:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6KK4 # _exptl.entry_id 6KK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 644.809 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(9~{R},16~{S},19~{S})-16,19-bis(4-azanylbutyl)-4,8,15,18,21-pentakis(oxidanylidene)-3,7,14,17,20-pentazabicyclo[21.3.1]heptacosa-1(26),23(27),24-trien-9-yl]guanidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KK4 _cell.length_a 48.828 _cell.length_b 60.432 _cell.length_c 83.196 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H52 N10 O5' _chem_comp.formula_weight 644.809 _chem_comp.id DE0 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(9~{R},16~{S},19~{S})-16,19-bis(4-azanylbutyl)-4,8,15,18,21-pentakis(oxidanylidene)-3,7,14,17,20-pentazabicyclo[21.3.1]heptacosa-1(26),23(27),24-trien-9-yl]guanidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N33 C32 DE0 sing 83 n n C32 C31 DE0 sing 84 n n C23 N24 DE0 sing 85 n n C23 C22 DE0 sing 86 n n C21 C22 DE0 sing 87 n n C21 C20 DE0 sing 88 n n C40 C41 DE0 doub 89 n y C40 C38 DE0 sing 90 n y C37 C38 DE0 sing 91 n n C37 C35 DE0 sing 92 n n C41 C01 DE0 sing 93 n y C31 C30 DE0 sing 94 n n C38 C39 DE0 doub 95 n y C01 C02 DE0 doub 96 n y C39 C02 DE0 sing 97 n y C30 C29 DE0 sing 98 n n C02 C03 DE0 sing 99 n n N34 C35 DE0 sing 100 n n N34 C28 DE0 sing 101 n n C20 C19 DE0 sing 102 n n C03 N04 DE0 sing 103 n n C29 C28 DE0 sing 104 n n C35 O36 DE0 doub 105 n n O06 C05 DE0 doub 106 n n N25 C19 DE0 sing 107 n n N25 C26 DE0 sing 108 n n C28 C26 DE0 sing 109 n n C19 C18 DE0 sing 110 n n C26 O27 DE0 doub 111 n n N04 C05 DE0 sing 112 n n C05 C07 DE0 sing 113 n n O42 C18 DE0 doub 114 n n O11 C10 DE0 doub 115 n n C18 N17 DE0 sing 116 n n N45 C44 DE0 doub 117 n n C07 C08 DE0 sing 118 n n C10 C12 DE0 sing 119 n n C10 N09 DE0 sing 120 n n C08 N09 DE0 sing 121 n n N17 C16 DE0 sing 122 n n C12 N43 DE0 sing 123 n n C12 C13 DE0 sing 124 n n C44 N43 DE0 sing 125 n n C44 N46 DE0 sing 126 n n C14 C13 DE0 sing 127 n n C14 C15 DE0 sing 128 n n C16 C15 DE0 sing 129 n n C13 H1 DE0 sing 130 n n C13 H2 DE0 sing 131 n n C15 H3 DE0 sing 132 n n C15 H4 DE0 sing 133 n n C20 H5 DE0 sing 134 n n C20 H6 DE0 sing 135 n n C21 H7 DE0 sing 136 n n C21 H8 DE0 sing 137 n n C22 H9 DE0 sing 138 n n C22 H10 DE0 sing 139 n n C28 H11 DE0 sing 140 n n C01 H12 DE0 sing 141 n n C03 H13 DE0 sing 142 n n C03 H14 DE0 sing 143 n n C07 H15 DE0 sing 144 n n C07 H16 DE0 sing 145 n n C08 H17 DE0 sing 146 n n C08 H18 DE0 sing 147 n n C12 H19 DE0 sing 148 n n C14 H20 DE0 sing 149 n n C14 H21 DE0 sing 150 n n C16 H22 DE0 sing 151 n n C16 H23 DE0 sing 152 n n C19 H24 DE0 sing 153 n n C23 H25 DE0 sing 154 n n C23 H26 DE0 sing 155 n n C29 H27 DE0 sing 156 n n C29 H28 DE0 sing 157 n n C30 H29 DE0 sing 158 n n C30 H30 DE0 sing 159 n n C31 H31 DE0 sing 160 n n C31 H32 DE0 sing 161 n n C32 H33 DE0 sing 162 n n C32 H34 DE0 sing 163 n n C37 H35 DE0 sing 164 n n C37 H36 DE0 sing 165 n n C39 H37 DE0 sing 166 n n C40 H38 DE0 sing 167 n n C41 H39 DE0 sing 168 n n N04 H40 DE0 sing 169 n n N09 H41 DE0 sing 170 n n N17 H42 DE0 sing 171 n n N24 H43 DE0 sing 172 n n N24 H44 DE0 sing 173 n n N25 H46 DE0 sing 174 n n N33 H47 DE0 sing 175 n n N33 H48 DE0 sing 176 n n N34 H50 DE0 sing 177 n n N43 H51 DE0 sing 178 n n N45 H52 DE0 sing 179 n n N46 H53 DE0 sing 180 n n N46 H54 DE0 sing 181 n n # _atom_sites.entry_id 6KK4 _atom_sites.fract_transf_matrix[1][1] 0.02048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DE0 B 1 201 201 DE0 LIG . D 4 GOL B 1 202 301 GOL GOL . E 5 HOH A 1 101 132 HOH HOH . E 5 HOH A 2 102 44 HOH HOH . E 5 HOH A 3 103 118 HOH HOH . E 5 HOH A 4 104 142 HOH HOH . E 5 HOH A 5 105 123 HOH HOH . E 5 HOH A 6 106 100 HOH HOH . E 5 HOH A 7 107 43 HOH HOH . E 5 HOH A 8 108 143 HOH HOH . E 5 HOH A 9 109 16 HOH HOH . E 5 HOH A 10 110 87 HOH HOH . E 5 HOH A 11 111 20 HOH HOH . E 5 HOH A 12 112 72 HOH HOH . E 5 HOH A 13 113 110 HOH HOH . E 5 HOH A 14 114 15 HOH HOH . E 5 HOH A 15 115 21 HOH HOH . E 5 HOH A 16 116 66 HOH HOH . E 5 HOH A 17 117 49 HOH HOH . E 5 HOH A 18 118 130 HOH HOH . E 5 HOH A 19 119 24 HOH HOH . E 5 HOH A 20 120 48 HOH HOH . E 5 HOH A 21 121 30 HOH HOH . E 5 HOH A 22 122 90 HOH HOH . E 5 HOH A 23 123 14 HOH HOH . E 5 HOH A 24 124 122 HOH HOH . E 5 HOH A 25 125 47 HOH HOH . E 5 HOH A 26 126 86 HOH HOH . E 5 HOH A 27 127 124 HOH HOH . E 5 HOH A 28 128 133 HOH HOH . E 5 HOH A 29 129 95 HOH HOH . E 5 HOH A 30 130 137 HOH HOH . E 5 HOH A 31 131 102 HOH HOH . E 5 HOH A 32 132 136 HOH HOH . E 5 HOH A 33 133 92 HOH HOH . F 5 HOH B 1 301 114 HOH HOH . F 5 HOH B 2 302 68 HOH HOH . F 5 HOH B 3 303 46 HOH HOH . F 5 HOH B 4 304 28 HOH HOH . F 5 HOH B 5 305 67 HOH HOH . F 5 HOH B 6 306 39 HOH HOH . F 5 HOH B 7 307 58 HOH HOH . F 5 HOH B 8 308 60 HOH HOH . F 5 HOH B 9 309 51 HOH HOH . F 5 HOH B 10 310 74 HOH HOH . F 5 HOH B 11 311 63 HOH HOH . F 5 HOH B 12 312 42 HOH HOH . F 5 HOH B 13 313 35 HOH HOH . F 5 HOH B 14 314 81 HOH HOH . F 5 HOH B 15 315 23 HOH HOH . F 5 HOH B 16 316 55 HOH HOH . F 5 HOH B 17 317 64 HOH HOH . F 5 HOH B 18 318 25 HOH HOH . F 5 HOH B 19 319 1 HOH HOH . F 5 HOH B 20 320 128 HOH HOH . F 5 HOH B 21 321 84 HOH HOH . F 5 HOH B 22 322 7 HOH HOH . F 5 HOH B 23 323 29 HOH HOH . F 5 HOH B 24 324 10 HOH HOH . F 5 HOH B 25 325 3 HOH HOH . F 5 HOH B 26 326 9 HOH HOH . F 5 HOH B 27 327 116 HOH HOH . F 5 HOH B 28 328 71 HOH HOH . F 5 HOH B 29 329 40 HOH HOH . F 5 HOH B 30 330 62 HOH HOH . F 5 HOH B 31 331 120 HOH HOH . F 5 HOH B 32 332 4 HOH HOH . F 5 HOH B 33 333 2 HOH HOH . F 5 HOH B 34 334 37 HOH HOH . F 5 HOH B 35 335 105 HOH HOH . F 5 HOH B 36 336 73 HOH HOH . F 5 HOH B 37 337 111 HOH HOH . F 5 HOH B 38 338 8 HOH HOH . F 5 HOH B 39 339 19 HOH HOH . F 5 HOH B 40 340 134 HOH HOH . F 5 HOH B 41 341 13 HOH HOH . F 5 HOH B 42 342 32 HOH HOH . F 5 HOH B 43 343 26 HOH HOH . F 5 HOH B 44 344 11 HOH HOH . F 5 HOH B 45 345 5 HOH HOH . F 5 HOH B 46 346 57 HOH HOH . F 5 HOH B 47 347 83 HOH HOH . F 5 HOH B 48 348 82 HOH HOH . F 5 HOH B 49 349 56 HOH HOH . F 5 HOH B 50 350 77 HOH HOH . F 5 HOH B 51 351 6 HOH HOH . F 5 HOH B 52 352 34 HOH HOH . F 5 HOH B 53 353 107 HOH HOH . F 5 HOH B 54 354 18 HOH HOH . F 5 HOH B 55 355 45 HOH HOH . F 5 HOH B 56 356 79 HOH HOH . F 5 HOH B 57 357 97 HOH HOH . F 5 HOH B 58 358 121 HOH HOH . F 5 HOH B 59 359 41 HOH HOH . F 5 HOH B 60 360 99 HOH HOH . F 5 HOH B 61 361 36 HOH HOH . F 5 HOH B 62 362 131 HOH HOH . F 5 HOH B 63 363 115 HOH HOH . F 5 HOH B 64 364 106 HOH HOH . F 5 HOH B 65 365 17 HOH HOH . F 5 HOH B 66 366 112 HOH HOH . F 5 HOH B 67 367 129 HOH HOH . F 5 HOH B 68 368 91 HOH HOH . F 5 HOH B 69 369 80 HOH HOH . F 5 HOH B 70 370 76 HOH HOH . F 5 HOH B 71 371 140 HOH HOH . F 5 HOH B 72 372 94 HOH HOH . F 5 HOH B 73 373 22 HOH HOH . F 5 HOH B 74 374 96 HOH HOH . F 5 HOH B 75 375 54 HOH HOH . F 5 HOH B 76 376 38 HOH HOH . F 5 HOH B 77 377 141 HOH HOH . F 5 HOH B 78 378 70 HOH HOH . F 5 HOH B 79 379 33 HOH HOH . F 5 HOH B 80 380 138 HOH HOH . F 5 HOH B 81 381 113 HOH HOH . F 5 HOH B 82 382 75 HOH HOH . F 5 HOH B 83 383 59 HOH HOH . F 5 HOH B 84 384 52 HOH HOH . F 5 HOH B 85 385 109 HOH HOH . F 5 HOH B 86 386 12 HOH HOH . F 5 HOH B 87 387 31 HOH HOH . F 5 HOH B 88 388 93 HOH HOH . F 5 HOH B 89 389 85 HOH HOH . F 5 HOH B 90 390 98 HOH HOH . F 5 HOH B 91 391 104 HOH HOH . F 5 HOH B 92 392 126 HOH HOH . F 5 HOH B 93 393 50 HOH HOH . F 5 HOH B 94 394 101 HOH HOH . F 5 HOH B 95 395 78 HOH HOH . F 5 HOH B 96 396 103 HOH HOH . F 5 HOH B 97 397 53 HOH HOH . F 5 HOH B 98 398 61 HOH HOH . F 5 HOH B 99 399 88 HOH HOH . F 5 HOH B 100 400 117 HOH HOH . F 5 HOH B 101 401 65 HOH HOH . F 5 HOH B 102 402 135 HOH HOH . F 5 HOH B 103 403 125 HOH HOH . F 5 HOH B 104 404 119 HOH HOH . F 5 HOH B 105 405 127 HOH HOH . F 5 HOH B 106 406 27 HOH HOH . F 5 HOH B 107 407 89 HOH HOH . F 5 HOH B 108 408 69 HOH HOH . F 5 HOH B 109 409 108 HOH HOH . F 5 HOH B 110 410 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 DE0 . . . C 3 8.069 -14.548 5.18 1 16.93 ? C10 DE0 201 B 1 HETATM 2 C C13 DE0 . . . C 3 6.354 -13.824 6.816 1 14.36 ? C13 DE0 201 B 1 HETATM 3 C C15 DE0 . . . C 3 4.198 -15.047 7.109 1 14.59 ? C15 DE0 201 B 1 HETATM 4 C C20 DE0 . . . C 3 1.325 -14.541 2.026 1 21.15 ? C20 DE0 201 B 1 HETATM 5 C C21 DE0 . . . C 3 0.739 -13.506 1.065 1 19.52 ? C21 DE0 201 B 1 HETATM 6 C C22 DE0 . . . C 3 -0.526 -12.805 1.585 1 20.43 ? C22 DE0 201 B 1 HETATM 7 C C26 DE0 . . . C 3 2.874 -11.53 3.429 1 17.1 ? C26 DE0 201 B 1 HETATM 8 C C28 DE0 . . . C 3 3.927 -10.527 2.941 1 16.31 ? C28 DE0 201 B 1 HETATM 9 C C01 DE0 . . . C 3 11.245 -11.469 1.643 1 15.47 ? C01 DE0 201 B 1 HETATM 10 C C02 DE0 . . . C 3 10.673 -12.732 1.822 1 14.43 ? C02 DE0 201 B 1 HETATM 11 C C03 DE0 . . . C 3 11.602 -13.92 2.083 1 18.87 ? C03 DE0 201 B 1 HETATM 12 C C05 DE0 . . . C 3 11.075 -15.908 3.474 1 16.93 ? C05 DE0 201 B 1 HETATM 13 C C07 DE0 . . . C 3 11.035 -16.382 4.915 1 19 ? C07 DE0 201 B 1 HETATM 14 C C08 DE0 . . . C 3 9.572 -16.471 5.306 1 21.66 ? C08 DE0 201 B 1 HETATM 15 C C12 DE0 . . . C 3 7.427 -13.327 5.831 1 12.11 ? C12 DE0 201 B 1 HETATM 16 C C14 DE0 . . . C 3 5.242 -14.575 6.046 1 16.51 ? C14 DE0 201 B 1 HETATM 17 C C16 DE0 . . . C 3 3.007 -15.783 6.44 1 14.95 ? C16 DE0 201 B 1 HETATM 18 C C18 DE0 . . . C 3 2.631 -14.951 4.092 1 21.13 ? C18 DE0 201 B 1 HETATM 19 C C19 DE0 . . . C 3 1.923 -13.888 3.286 1 19.24 ? C19 DE0 201 B 1 HETATM 20 C C23 DE0 . . . C 3 -0.92 -11.722 0.571 1 27.05 ? C23 DE0 201 B 1 HETATM 21 C C29 DE0 . . . C 3 3.185 -9.474 2.113 1 21.18 ? C29 DE0 201 B 1 HETATM 22 C C30 DE0 . . . C 3 4.142 -8.293 1.919 1 27.4 ? C30 DE0 201 B 1 HETATM 23 C C31 DE0 . . . C 3 3.395 -7.049 1.361 1 26.9 ? C31 DE0 201 B 1 HETATM 24 C C32 DE0 . . . C 3 2.507 -7.24 0.146 1 25.93 ? C32 DE0 201 B 1 HETATM 25 C C35 DE0 . . . C 3 6.208 -11.493 2.428 1 16.14 ? C35 DE0 201 B 1 HETATM 26 C C37 DE0 . . . C 3 7.011 -12.142 1.308 1 18.72 ? C37 DE0 201 B 1 HETATM 27 C C38 DE0 . . . C 3 8.489 -11.847 1.45 1 16.23 ? C38 DE0 201 B 1 HETATM 28 C C39 DE0 . . . C 3 9.306 -12.955 1.709 1 15.25 ? C39 DE0 201 B 1 HETATM 29 C C40 DE0 . . . C 3 9.02 -10.584 1.241 1 16.82 ? C40 DE0 201 B 1 HETATM 30 C C41 DE0 . . . C 3 10.413 -10.365 1.351 1 15.91 ? C41 DE0 201 B 1 HETATM 31 C C44 DE0 . . . C 3 9.227 -11.64 6.033 1 16.39 ? C44 DE0 201 B 1 HETATM 32 N N04 DE0 . . . C 3 11.451 -14.529 3.394 1 15.67 ? N04 DE0 201 B 1 HETATM 33 N N09 DE0 . . . C 3 9.059 -15.255 5.923 1 19.19 ? N09 DE0 201 B 1 HETATM 34 N N17 DE0 . . . C 3 2.402 -14.873 5.472 1 16.51 ? N17 DE0 201 B 1 HETATM 35 N N24 DE0 . . . C 3 -2.301 -11.286 0.8 1 23.1 ? N24 DE0 201 B 1 HETATM 36 N N25 DE0 . . . C 3 2.908 -12.858 2.924 1 18.01 ? N25 DE0 201 B 1 HETATM 37 N N33 DE0 . . . C 3 2.152 -5.876 -0.298 1 22.78 ? N33 DE0 201 B 1 HETATM 38 N N34 DE0 . . . C 3 4.882 -11.189 2.023 1 14.6 ? N34 DE0 201 B 1 HETATM 39 N N43 DE0 . . . C 3 8.417 -12.659 6.626 1 13.29 ? N43 DE0 201 B 1 HETATM 40 N N45 DE0 . . . C 3 9.14 -11.258 4.811 1 16.58 ? N45 DE0 201 B 1 HETATM 41 N N46 DE0 . . . C 3 10.172 -11.129 6.963 1 16.34 ? N46 DE0 201 B 1 HETATM 42 O O06 DE0 . . . C 3 10.788 -16.57 2.498 1 20.88 ? O06 DE0 201 B 1 HETATM 43 O O11 DE0 . . . C 3 7.701 -14.912 4.101 1 18.6 ? O11 DE0 201 B 1 HETATM 44 O O27 DE0 . . . C 3 2.034 -11.21 4.237 1 16.31 ? O27 DE0 201 B 1 HETATM 45 O O36 DE0 . . . C 3 6.652 -11.301 3.514 1 15.9 ? O36 DE0 201 B 1 HETATM 46 O O42 DE0 . . . C 3 3.347 -15.791 3.6 1 20.63 ? O42 DE0 201 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #