data_6KK6 # _model_server_result.job_id iy-JFO_Oi2nCyGSQ600d-A _model_server_result.datetime_utc '2025-06-19 16:25:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6KK6 # _exptl.entry_id 6KK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KK6 _cell.length_a 48.57 _cell.length_b 60.651 _cell.length_c 83.35 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 228 n n C1 C2 GOL sing 229 n n C1 H11 GOL sing 230 n n C1 H12 GOL sing 231 n n O1 HO1 GOL sing 232 n n C2 O2 GOL sing 233 n n C2 C3 GOL sing 234 n n C2 H2 GOL sing 235 n n O2 HO2 GOL sing 236 n n C3 O3 GOL sing 237 n n C3 H31 GOL sing 238 n n C3 H32 GOL sing 239 n n O3 HO3 GOL sing 240 n n # _atom_sites.entry_id 6KK6 _atom_sites.fract_transf_matrix[1][1] 0.020589 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 101 3 SO4 SO4 . D 4 GOL B 1 201 1 GOL GOL . E 5 DV0 B 1 202 201 DV0 LIG . F 6 HOH A 1 201 62 HOH HOH . F 6 HOH A 2 202 97 HOH HOH . F 6 HOH A 3 203 85 HOH HOH . F 6 HOH A 4 204 25 HOH HOH . F 6 HOH A 5 205 46 HOH HOH . F 6 HOH A 6 206 64 HOH HOH . F 6 HOH A 7 207 19 HOH HOH . F 6 HOH A 8 208 48 HOH HOH . F 6 HOH A 9 209 31 HOH HOH . F 6 HOH A 10 210 18 HOH HOH . F 6 HOH A 11 211 21 HOH HOH . F 6 HOH A 12 212 75 HOH HOH . F 6 HOH A 13 213 22 HOH HOH . F 6 HOH A 14 214 53 HOH HOH . F 6 HOH A 15 215 81 HOH HOH . F 6 HOH A 16 216 39 HOH HOH . F 6 HOH A 17 217 54 HOH HOH . F 6 HOH A 18 218 38 HOH HOH . F 6 HOH A 19 219 76 HOH HOH . F 6 HOH A 20 220 69 HOH HOH . F 6 HOH A 21 221 60 HOH HOH . F 6 HOH A 22 222 40 HOH HOH . F 6 HOH A 23 223 83 HOH HOH . G 6 HOH B 1 301 98 HOH HOH . G 6 HOH B 2 302 57 HOH HOH . G 6 HOH B 3 303 78 HOH HOH . G 6 HOH B 4 304 86 HOH HOH . G 6 HOH B 5 305 49 HOH HOH . G 6 HOH B 6 306 66 HOH HOH . G 6 HOH B 7 307 32 HOH HOH . G 6 HOH B 8 308 26 HOH HOH . G 6 HOH B 9 309 50 HOH HOH . G 6 HOH B 10 310 2 HOH HOH . G 6 HOH B 11 311 9 HOH HOH . G 6 HOH B 12 312 45 HOH HOH . G 6 HOH B 13 313 3 HOH HOH . G 6 HOH B 14 314 16 HOH HOH . G 6 HOH B 15 315 1 HOH HOH . G 6 HOH B 16 316 24 HOH HOH . G 6 HOH B 17 317 10 HOH HOH . G 6 HOH B 18 318 34 HOH HOH . G 6 HOH B 19 319 11 HOH HOH . G 6 HOH B 20 320 15 HOH HOH . G 6 HOH B 21 321 30 HOH HOH . G 6 HOH B 22 322 20 HOH HOH . G 6 HOH B 23 323 89 HOH HOH . G 6 HOH B 24 324 12 HOH HOH . G 6 HOH B 25 325 79 HOH HOH . G 6 HOH B 26 326 29 HOH HOH . G 6 HOH B 27 327 44 HOH HOH . G 6 HOH B 28 328 5 HOH HOH . G 6 HOH B 29 329 35 HOH HOH . G 6 HOH B 30 330 41 HOH HOH . G 6 HOH B 31 331 33 HOH HOH . G 6 HOH B 32 332 6 HOH HOH . G 6 HOH B 33 333 52 HOH HOH . G 6 HOH B 34 334 43 HOH HOH . G 6 HOH B 35 335 4 HOH HOH . G 6 HOH B 36 336 23 HOH HOH . G 6 HOH B 37 337 72 HOH HOH . G 6 HOH B 38 338 47 HOH HOH . G 6 HOH B 39 339 36 HOH HOH . G 6 HOH B 40 340 88 HOH HOH . G 6 HOH B 41 341 28 HOH HOH . G 6 HOH B 42 342 8 HOH HOH . G 6 HOH B 43 343 59 HOH HOH . G 6 HOH B 44 344 67 HOH HOH . G 6 HOH B 45 345 7 HOH HOH . G 6 HOH B 46 346 27 HOH HOH . G 6 HOH B 47 347 37 HOH HOH . G 6 HOH B 48 348 90 HOH HOH . G 6 HOH B 49 349 13 HOH HOH . G 6 HOH B 50 350 92 HOH HOH . G 6 HOH B 51 351 71 HOH HOH . G 6 HOH B 52 352 65 HOH HOH . G 6 HOH B 53 353 56 HOH HOH . G 6 HOH B 54 354 14 HOH HOH . G 6 HOH B 55 355 95 HOH HOH . G 6 HOH B 56 356 74 HOH HOH . G 6 HOH B 57 357 61 HOH HOH . G 6 HOH B 58 358 80 HOH HOH . G 6 HOH B 59 359 17 HOH HOH . G 6 HOH B 60 360 63 HOH HOH . G 6 HOH B 61 361 82 HOH HOH . G 6 HOH B 62 362 91 HOH HOH . G 6 HOH B 63 363 93 HOH HOH . G 6 HOH B 64 364 42 HOH HOH . G 6 HOH B 65 365 51 HOH HOH . G 6 HOH B 66 366 96 HOH HOH . G 6 HOH B 67 367 73 HOH HOH . G 6 HOH B 68 368 58 HOH HOH . G 6 HOH B 69 369 70 HOH HOH . G 6 HOH B 70 370 94 HOH HOH . G 6 HOH B 71 371 87 HOH HOH . G 6 HOH B 72 372 55 HOH HOH . G 6 HOH B 73 373 68 HOH HOH . G 6 HOH B 74 374 84 HOH HOH . G 6 HOH B 75 375 77 HOH HOH . G 6 HOH B 76 376 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -9.044 -5.973 14.641 1 43.75 ? C1 GOL 201 B 1 HETATM 2 O O1 GOL . . . D 4 -8.669 -4.757 15.21 1 35.22 ? O1 GOL 201 B 1 HETATM 3 C C2 GOL . . . D 4 -9.625 -6.735 15.799 1 48.09 ? C2 GOL 201 B 1 HETATM 4 O O2 GOL . . . D 4 -10.721 -6.109 16.367 1 45.15 ? O2 GOL 201 B 1 HETATM 5 C C3 GOL . . . D 4 -9.987 -8.097 15.278 1 37.43 ? C3 GOL 201 B 1 HETATM 6 O O3 GOL . . . D 4 -10.093 -8.799 16.439 1 26.3 ? O3 GOL 201 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #