data_6KKF # _model_server_result.job_id K1A-XuDb3515IqdYi7VtRg _model_server_result.datetime_utc '2024-11-28 18:12:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kkf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6KKF # _exptl.entry_id 6KKF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.393 _cell.angle_gamma 90 _cell.entry_id 6KKF _cell.length_a 38.512 _cell.length_b 67.685 _cell.length_c 43.592 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 139 1_555 A SG CYS 123 A CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf2 A SG CYS 178 A CYS 283 1_555 A SG CYS 249 A CYS 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc1 A O THR 16 A THR 121 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc2 A O PRO 175 A PRO 280 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc3 A O VAL 177 A VAL 282 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc4 A OD1 ASP 200 A ASP 305 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc5 A OD2 ASP 200 A ASP 305 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc6 A OD1 ASP 260 A ASP 365 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc7 A OD2 ASP 260 A ASP 365 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc8 B CA CA . A CA 401 1_555 E O HOH . A HOH 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc9 B CA CA . A CA 401 1_555 E O HOH . A HOH 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc10 B CA CA . A CA 401 1_555 E O HOH . A HOH 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc11 B CA CA . A CA 401 1_555 E O HOH . A HOH 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc12 C CA CA . A CA 402 1_555 E O HOH . A HOH 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc13 C CA CA . A CA 402 1_555 E O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6KKF _atom_sites.fract_transf_matrix[1][1] 0.025966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010172 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 401 CA CA . C 2 CA A 1 402 402 CA CA . D 3 GGG A 1 403 1 GGG GGG . E 4 HOH A 1 501 232 HOH HOH . E 4 HOH A 2 502 176 HOH HOH . E 4 HOH A 3 503 208 HOH HOH . E 4 HOH A 4 504 230 HOH HOH . E 4 HOH A 5 505 120 HOH HOH . E 4 HOH A 6 506 135 HOH HOH . E 4 HOH A 7 507 132 HOH HOH . E 4 HOH A 8 508 219 HOH HOH . E 4 HOH A 9 509 148 HOH HOH . E 4 HOH A 10 510 251 HOH HOH . E 4 HOH A 11 511 245 HOH HOH . E 4 HOH A 12 512 119 HOH HOH . E 4 HOH A 13 513 69 HOH HOH . E 4 HOH A 14 514 55 HOH HOH . E 4 HOH A 15 515 71 HOH HOH . E 4 HOH A 16 516 68 HOH HOH . E 4 HOH A 17 517 30 HOH HOH . E 4 HOH A 18 518 256 HOH HOH . E 4 HOH A 19 519 17 HOH HOH . E 4 HOH A 20 520 123 HOH HOH . E 4 HOH A 21 521 191 HOH HOH . E 4 HOH A 22 522 82 HOH HOH . E 4 HOH A 23 523 59 HOH HOH . E 4 HOH A 24 524 42 HOH HOH . E 4 HOH A 25 525 86 HOH HOH . E 4 HOH A 26 526 134 HOH HOH . E 4 HOH A 27 527 184 HOH HOH . E 4 HOH A 28 528 48 HOH HOH . E 4 HOH A 29 529 128 HOH HOH . E 4 HOH A 30 530 242 HOH HOH . E 4 HOH A 31 531 8 HOH HOH . E 4 HOH A 32 532 233 HOH HOH . E 4 HOH A 33 533 189 HOH HOH . E 4 HOH A 34 534 63 HOH HOH . E 4 HOH A 35 535 61 HOH HOH . E 4 HOH A 36 536 235 HOH HOH . E 4 HOH A 37 537 2 HOH HOH . E 4 HOH A 38 538 26 HOH HOH . E 4 HOH A 39 539 53 HOH HOH . E 4 HOH A 40 540 137 HOH HOH . E 4 HOH A 41 541 51 HOH HOH . E 4 HOH A 42 542 34 HOH HOH . E 4 HOH A 43 543 18 HOH HOH . E 4 HOH A 44 544 100 HOH HOH . E 4 HOH A 45 545 220 HOH HOH . E 4 HOH A 46 546 243 HOH HOH . E 4 HOH A 47 547 46 HOH HOH . E 4 HOH A 48 548 162 HOH HOH . E 4 HOH A 49 549 108 HOH HOH . E 4 HOH A 50 550 131 HOH HOH . E 4 HOH A 51 551 38 HOH HOH . E 4 HOH A 52 552 94 HOH HOH . E 4 HOH A 53 553 89 HOH HOH . E 4 HOH A 54 554 95 HOH HOH . E 4 HOH A 55 555 45 HOH HOH . E 4 HOH A 56 556 183 HOH HOH . E 4 HOH A 57 557 178 HOH HOH . E 4 HOH A 58 558 149 HOH HOH . E 4 HOH A 59 559 35 HOH HOH . E 4 HOH A 60 560 166 HOH HOH . E 4 HOH A 61 561 56 HOH HOH . E 4 HOH A 62 562 20 HOH HOH . E 4 HOH A 63 563 138 HOH HOH . E 4 HOH A 64 564 141 HOH HOH . E 4 HOH A 65 565 115 HOH HOH . E 4 HOH A 66 566 103 HOH HOH . E 4 HOH A 67 567 107 HOH HOH . E 4 HOH A 68 568 29 HOH HOH . E 4 HOH A 69 569 3 HOH HOH . E 4 HOH A 70 570 36 HOH HOH . E 4 HOH A 71 571 160 HOH HOH . E 4 HOH A 72 572 4 HOH HOH . E 4 HOH A 73 573 206 HOH HOH . E 4 HOH A 74 574 7 HOH HOH . E 4 HOH A 75 575 240 HOH HOH . E 4 HOH A 76 576 130 HOH HOH . E 4 HOH A 77 577 96 HOH HOH . E 4 HOH A 78 578 65 HOH HOH . E 4 HOH A 79 579 90 HOH HOH . E 4 HOH A 80 580 241 HOH HOH . E 4 HOH A 81 581 24 HOH HOH . E 4 HOH A 82 582 93 HOH HOH . E 4 HOH A 83 583 13 HOH HOH . E 4 HOH A 84 584 174 HOH HOH . E 4 HOH A 85 585 6 HOH HOH . E 4 HOH A 86 586 248 HOH HOH . E 4 HOH A 87 587 21 HOH HOH . E 4 HOH A 88 588 16 HOH HOH . E 4 HOH A 89 589 25 HOH HOH . E 4 HOH A 90 590 226 HOH HOH . E 4 HOH A 91 591 50 HOH HOH . E 4 HOH A 92 592 186 HOH HOH . E 4 HOH A 93 593 9 HOH HOH . E 4 HOH A 94 594 99 HOH HOH . E 4 HOH A 95 595 77 HOH HOH . E 4 HOH A 96 596 98 HOH HOH . E 4 HOH A 97 597 41 HOH HOH . E 4 HOH A 98 598 10 HOH HOH . E 4 HOH A 99 599 14 HOH HOH . E 4 HOH A 100 600 121 HOH HOH . E 4 HOH A 101 601 28 HOH HOH . E 4 HOH A 102 602 187 HOH HOH . E 4 HOH A 103 603 72 HOH HOH . E 4 HOH A 104 604 62 HOH HOH . E 4 HOH A 105 605 49 HOH HOH . E 4 HOH A 106 606 83 HOH HOH . E 4 HOH A 107 607 66 HOH HOH . E 4 HOH A 108 608 181 HOH HOH . E 4 HOH A 109 609 258 HOH HOH . E 4 HOH A 110 610 11 HOH HOH . E 4 HOH A 111 611 88 HOH HOH . E 4 HOH A 112 612 76 HOH HOH . E 4 HOH A 113 613 44 HOH HOH . E 4 HOH A 114 614 47 HOH HOH . E 4 HOH A 115 615 102 HOH HOH . E 4 HOH A 116 616 12 HOH HOH . E 4 HOH A 117 617 111 HOH HOH . E 4 HOH A 118 618 1 HOH HOH . E 4 HOH A 119 619 27 HOH HOH . E 4 HOH A 120 620 146 HOH HOH . E 4 HOH A 121 621 252 HOH HOH . E 4 HOH A 122 622 57 HOH HOH . E 4 HOH A 123 623 112 HOH HOH . E 4 HOH A 124 624 5 HOH HOH . E 4 HOH A 125 625 197 HOH HOH . E 4 HOH A 126 626 87 HOH HOH . E 4 HOH A 127 627 118 HOH HOH . E 4 HOH A 128 628 154 HOH HOH . E 4 HOH A 129 629 32 HOH HOH . E 4 HOH A 130 630 127 HOH HOH . E 4 HOH A 131 631 192 HOH HOH . E 4 HOH A 132 632 117 HOH HOH . E 4 HOH A 133 633 110 HOH HOH . E 4 HOH A 134 634 37 HOH HOH . E 4 HOH A 135 635 255 HOH HOH . E 4 HOH A 136 636 74 HOH HOH . E 4 HOH A 137 637 217 HOH HOH . E 4 HOH A 138 638 179 HOH HOH . E 4 HOH A 139 639 200 HOH HOH . E 4 HOH A 140 640 169 HOH HOH . E 4 HOH A 141 641 150 HOH HOH . E 4 HOH A 142 642 43 HOH HOH . E 4 HOH A 143 643 19 HOH HOH . E 4 HOH A 144 644 67 HOH HOH . E 4 HOH A 145 645 228 HOH HOH . E 4 HOH A 146 646 190 HOH HOH . E 4 HOH A 147 647 147 HOH HOH . E 4 HOH A 148 648 52 HOH HOH . E 4 HOH A 149 649 97 HOH HOH . E 4 HOH A 150 650 78 HOH HOH . E 4 HOH A 151 651 142 HOH HOH . E 4 HOH A 152 652 64 HOH HOH . E 4 HOH A 153 653 60 HOH HOH . E 4 HOH A 154 654 221 HOH HOH . E 4 HOH A 155 655 85 HOH HOH . E 4 HOH A 156 656 106 HOH HOH . E 4 HOH A 157 657 22 HOH HOH . E 4 HOH A 158 658 140 HOH HOH . E 4 HOH A 159 659 73 HOH HOH . E 4 HOH A 160 660 91 HOH HOH . E 4 HOH A 161 661 195 HOH HOH . E 4 HOH A 162 662 203 HOH HOH . E 4 HOH A 163 663 105 HOH HOH . E 4 HOH A 164 664 80 HOH HOH . E 4 HOH A 165 665 153 HOH HOH . E 4 HOH A 166 666 39 HOH HOH . E 4 HOH A 167 667 23 HOH HOH . E 4 HOH A 168 668 165 HOH HOH . E 4 HOH A 169 669 40 HOH HOH . E 4 HOH A 170 670 79 HOH HOH . E 4 HOH A 171 671 15 HOH HOH . E 4 HOH A 172 672 259 HOH HOH . E 4 HOH A 173 673 144 HOH HOH . E 4 HOH A 174 674 188 HOH HOH . E 4 HOH A 175 675 92 HOH HOH . E 4 HOH A 176 676 239 HOH HOH . E 4 HOH A 177 677 139 HOH HOH . E 4 HOH A 178 678 104 HOH HOH . E 4 HOH A 179 679 207 HOH HOH . E 4 HOH A 180 680 156 HOH HOH . E 4 HOH A 181 681 151 HOH HOH . E 4 HOH A 182 682 101 HOH HOH . E 4 HOH A 183 683 211 HOH HOH . E 4 HOH A 184 684 125 HOH HOH . E 4 HOH A 185 685 185 HOH HOH . E 4 HOH A 186 686 231 HOH HOH . E 4 HOH A 187 687 244 HOH HOH . E 4 HOH A 188 688 116 HOH HOH . E 4 HOH A 189 689 254 HOH HOH . E 4 HOH A 190 690 113 HOH HOH . E 4 HOH A 191 691 182 HOH HOH . E 4 HOH A 192 692 129 HOH HOH . E 4 HOH A 193 693 204 HOH HOH . E 4 HOH A 194 694 198 HOH HOH . E 4 HOH A 195 695 136 HOH HOH . E 4 HOH A 196 696 143 HOH HOH . E 4 HOH A 197 697 269 HOH HOH . E 4 HOH A 198 698 265 HOH HOH . E 4 HOH A 199 699 164 HOH HOH . E 4 HOH A 200 700 170 HOH HOH . E 4 HOH A 201 701 193 HOH HOH . E 4 HOH A 202 702 75 HOH HOH . E 4 HOH A 203 703 194 HOH HOH . E 4 HOH A 204 704 199 HOH HOH . E 4 HOH A 205 705 263 HOH HOH . E 4 HOH A 206 706 227 HOH HOH . E 4 HOH A 207 707 31 HOH HOH . E 4 HOH A 208 708 247 HOH HOH . E 4 HOH A 209 709 224 HOH HOH . E 4 HOH A 210 710 223 HOH HOH . E 4 HOH A 211 711 222 HOH HOH . E 4 HOH A 212 712 173 HOH HOH . E 4 HOH A 213 713 237 HOH HOH . E 4 HOH A 214 714 168 HOH HOH . E 4 HOH A 215 715 54 HOH HOH . E 4 HOH A 216 716 133 HOH HOH . E 4 HOH A 217 717 167 HOH HOH . E 4 HOH A 218 718 175 HOH HOH . E 4 HOH A 219 719 215 HOH HOH . E 4 HOH A 220 720 152 HOH HOH . E 4 HOH A 221 721 70 HOH HOH . E 4 HOH A 222 722 84 HOH HOH . E 4 HOH A 223 723 218 HOH HOH . E 4 HOH A 224 724 124 HOH HOH . E 4 HOH A 225 725 267 HOH HOH . E 4 HOH A 226 726 209 HOH HOH . E 4 HOH A 227 727 214 HOH HOH . E 4 HOH A 228 728 236 HOH HOH . E 4 HOH A 229 729 262 HOH HOH . E 4 HOH A 230 730 58 HOH HOH . E 4 HOH A 231 731 216 HOH HOH . E 4 HOH A 232 732 158 HOH HOH . E 4 HOH A 233 733 253 HOH HOH . E 4 HOH A 234 734 161 HOH HOH . E 4 HOH A 235 735 260 HOH HOH . E 4 HOH A 236 736 225 HOH HOH . E 4 HOH A 237 737 205 HOH HOH . E 4 HOH A 238 738 177 HOH HOH . E 4 HOH A 239 739 180 HOH HOH . E 4 HOH A 240 740 201 HOH HOH . E 4 HOH A 241 741 114 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 1.701 _atom_site.Cartn_y 6.989 _atom_site.Cartn_z -10.43 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #