data_6KKI
#
_model_server_result.job_id            wgKxFcwbjy8WvsPjFm1J9A 
_model_server_result.datetime_utc      '2024-11-04 22:51:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kki 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    6KKI 
#
_exptl.entry_id    6KKI 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              238.301 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1-methylethyl 1-thio-beta-D-galactopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KKI 
_cell.length_a            69.778 
_cell.length_b            84.698 
_cell.length_c            88.188 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KKI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C9 H18 O5 S' 
_chem_comp.formula_weight    238.301 
_chem_comp.id                IPT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1-methylethyl 1-thio-beta-D-galactopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'ISOPROPYL-1-BETA-D-THIOGALACTOSIDE;1-(ISOPROPYLTHIO)-BETA-GALACTOPYRANSIDE;1-methylethyl 1-thio-beta-D-galactoside;1-methylethyl 1-thio-D-galactoside;1-methylethyl 1-thio-galactoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 IPT sing 222 n n 
C1 O5 IPT sing 223 n n 
C1 S1 IPT sing 224 n n 
C1 H1 IPT sing 225 n n 
C2 O2 IPT sing 226 n n 
C2 C3 IPT sing 227 n n 
C2 H2 IPT sing 228 n n 
O2 HO2 IPT sing 229 n n 
C3 O3 IPT sing 230 n n 
C3 C4 IPT sing 231 n n 
C3 H3 IPT sing 232 n n 
O3 HO3 IPT sing 233 n n 
C4 O4 IPT sing 234 n n 
C4 C5 IPT sing 235 n n 
C4 H4 IPT sing 236 n n 
O4 HO4 IPT sing 237 n n 
C5 O5 IPT sing 238 n n 
C5 C6 IPT sing 239 n n 
C5 H5 IPT sing 240 n n 
C6 O6 IPT sing 241 n n 
C6 H61 IPT sing 242 n n 
C6 H62 IPT sing 243 n n 
O6 HO6 IPT sing 244 n n 
S1 C1' IPT sing 245 n n 
C1' C2' IPT sing 246 n n 
C1' C3' IPT sing 247 n n 
C1' H1' IPT sing 248 n n 
C2' "H2'1" IPT sing 249 n n 
C2' "H2'2" IPT sing 250 n n 
C2' "H2'3" IPT sing 251 n n 
C3' "H3'1" IPT sing 252 n n 
C3' "H3'2" IPT sing 253 n n 
C3' "H3'3" IPT sing 254 n n 
#
_pdbx_chem_comp_identifier.comp_id            IPT 
_pdbx_chem_comp_identifier.identifier         isopropyl-1-b-D-thiogalactoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     6KKI 
_atom_sites.fract_transf_matrix[1][1]    0.014331 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011807 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011339 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BNG A 1 401 1 BNG BNG . 
C 2 BNG A 1 402 2 BNG BNG . 
D 3 IPT A 1 403 1 IPT IPT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IPT . . . D 3 -19.681 -6.426 12.925 1 90.39 ? C1 IPT 403 A 1 
HETATM 2 C C2 IPT . . . D 3 -18.215 -6.113 13.098 1 90.56 ? C2 IPT 403 A 1 
HETATM 3 O O2 IPT . . . D 3 -17.943 -4.697 12.995 1 90.53 ? O2 IPT 403 A 1 
HETATM 4 C C3 IPT . . . D 3 -17.506 -6.82 12.008 1 95.97 ? C3 IPT 403 A 1 
HETATM 5 O O3 IPT . . . D 3 -16.09 -6.606 12.239 1 100.76 ? O3 IPT 403 A 1 
HETATM 6 C C4 IPT . . . D 3 -17.833 -8.292 11.796 1 97.46 ? C4 IPT 403 A 1 
HETATM 7 O O4 IPT . . . D 3 -16.833 -9.156 12.377 1 107.49 ? O4 IPT 403 A 1 
HETATM 8 C C5 IPT . . . D 3 -19.284 -8.679 12.201 1 92.58 ? C5 IPT 403 A 1 
HETATM 9 O O5 IPT . . . D 3 -19.823 -7.867 13.302 1 89.96 ? O5 IPT 403 A 1 
HETATM 10 C C6 IPT . . . D 3 -19.47 -10.14 12.507 1 105.06 ? C6 IPT 403 A 1 
HETATM 11 O O6 IPT . . . D 3 -19.783 -10.368 13.854 1 116.52 ? O6 IPT 403 A 1 
HETATM 12 S S1 IPT . . . D 3 -20.659 -5.308 13.877 1 105.19 ? S1 IPT 403 A 1 
HETATM 13 C C1' IPT . . . D 3 -22.385 -5.862 14.182 1 99.03 ? C1' IPT 403 A 1 
HETATM 14 C C2' IPT . . . D 3 -22.563 -7.383 14.154 1 96.29 ? C2' IPT 403 A 1 
HETATM 15 C C3' IPT . . . D 3 -23.387 -5.183 13.235 1 87.1 ? C3' IPT 403 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           15 
#