data_6KL7 # _model_server_result.job_id 4EMi89iNkAlxYdOPf4pgYg _model_server_result.datetime_utc '2025-03-05 21:10:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1004}' # _entry.id 6KL7 # _exptl.entry_id 6KL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.93 _cell.angle_gamma 90 _cell.entry_id 6KL7 _cell.length_a 62.441 _cell.length_b 76.835 _cell.length_c 119.456 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 114 A GLU 110 1_555 E BA BA . A BA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.005 ? metalc ? metalc2 A OD1 ASP 139 A ASP 135 1_555 E BA BA . A BA 1003 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 3.311 ? metalc ? metalc3 A O THR 190 A THR 186 1_555 D BA BA . A BA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc4 A OE1 GLU 260 A GLU 256 1_555 C BA BA . A BA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.358 ? metalc ? metalc5 A O THR 277 A THR 273 1_555 C BA BA . A BA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc6 A OG1 THR 277 A THR 273 1_555 C BA BA . A BA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.45 ? metalc ? metalc7 B O THR 190 B THR 186 1_555 H BA BA . B BA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.222 ? metalc ? metalc8 B O THR 277 B THR 273 1_555 G BA BA . B BA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? metalc ? metalc9 B OG1 THR 277 B THR 273 1_555 G BA BA . B BA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.39 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6KL7 _atom_sites.fract_transf_matrix[1][1] 0.016015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003093 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BA A 1 1001 1001 BA BA . D 2 BA A 1 1002 1002 BA BA . E 2 BA A 1 1003 1003 BA BA . F 3 EDO A 1 1004 1001 EDO EDO . G 2 BA B 1 1001 1001 BA BA . H 2 BA B 1 1002 1002 BA BA . I 4 HOH A 1 1101 31 HOH HOH . I 4 HOH A 2 1102 19 HOH HOH . I 4 HOH A 3 1103 26 HOH HOH . I 4 HOH A 4 1104 39 HOH HOH . I 4 HOH A 5 1105 35 HOH HOH . I 4 HOH A 6 1106 25 HOH HOH . I 4 HOH A 7 1107 17 HOH HOH . I 4 HOH A 8 1108 32 HOH HOH . I 4 HOH A 9 1109 16 HOH HOH . I 4 HOH A 10 1110 36 HOH HOH . I 4 HOH A 11 1111 22 HOH HOH . I 4 HOH A 12 1112 11 HOH HOH . I 4 HOH A 13 1113 8 HOH HOH . I 4 HOH A 14 1114 27 HOH HOH . I 4 HOH A 15 1115 12 HOH HOH . I 4 HOH A 16 1116 13 HOH HOH . I 4 HOH A 17 1117 23 HOH HOH . I 4 HOH A 18 1118 7 HOH HOH . I 4 HOH A 19 1119 18 HOH HOH . I 4 HOH A 20 1120 15 HOH HOH . I 4 HOH A 21 1121 10 HOH HOH . I 4 HOH A 22 1122 33 HOH HOH . I 4 HOH A 23 1123 28 HOH HOH . I 4 HOH A 24 1124 37 HOH HOH . I 4 HOH A 25 1125 9 HOH HOH . I 4 HOH A 26 1126 24 HOH HOH . I 4 HOH A 27 1127 14 HOH HOH . I 4 HOH A 28 1128 34 HOH HOH . J 4 HOH B 1 1101 38 HOH HOH . J 4 HOH B 2 1102 20 HOH HOH . J 4 HOH B 3 1103 21 HOH HOH . J 4 HOH B 4 1104 2 HOH HOH . J 4 HOH B 5 1105 1 HOH HOH . J 4 HOH B 6 1106 4 HOH HOH . J 4 HOH B 7 1107 3 HOH HOH . J 4 HOH B 8 1108 5 HOH HOH . J 4 HOH B 9 1109 29 HOH HOH . J 4 HOH B 10 1110 30 HOH HOH . J 4 HOH B 11 1111 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 21.384 -6.016 21.122 1 64.15 ? C1 EDO 1004 A 1 HETATM 2 O O1 EDO . . . F 3 22.731 -5.893 21.589 1 71.66 ? O1 EDO 1004 A 1 HETATM 3 C C2 EDO . . . F 3 20.888 -4.626 20.745 1 67.87 ? C2 EDO 1004 A 1 HETATM 4 O O2 EDO . . . F 3 19.555 -4.709 20.234 1 69.36 ? O2 EDO 1004 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #