data_6KM9
#
_model_server_result.job_id            363RAqVfdNIiARYstwvNww 
_model_server_result.datetime_utc      '2024-11-28 16:17:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6km9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1001}' 
#
_entry.id    6KM9 
#
_exptl.entry_id    6KM9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.331 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEXAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.56 
_cell.angle_gamma         90 
_cell.entry_id            6KM9 
_cell.length_a            84.271 
_cell.length_b            76.708 
_cell.length_c            144.579 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KM9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 305 A ASP 360 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc2 A OD1 ASN 338 A ASN 393 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc3 A O VAL 340 A VAL 395 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc4 A OE1 GLU 610 A GLU 665 1_555 F CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? 
metalc ? metalc5 D MG MG . A MG 1002 1_555 E O1A TPP . A TPP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc6 D MG MG . A MG 1002 1_555 E O1B TPP . A TPP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc7 D MG MG . A MG 1002 1_555 J O HOH . A HOH 1121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc8 F CA CA . A CA 1004 1_555 B OE1 GLU 610 B GLU 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? 
metalc ? metalc9 B OD1 ASP 305 B ASP 360 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc10 B OD1 ASN 338 B ASN 393 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc11 B O VAL 340 B VAL 395 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc12 H MG MG . B MG 1002 1_555 I O1A TPP . B TPP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc13 H MG MG . B MG 1002 1_555 I O3B TPP . B TPP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
#
_chem_comp.formula           'C12 H26 O7' 
_chem_comp.formula_weight    282.331 
_chem_comp.id                P6G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEXAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'POLYETHYLENE GLYCOL PEG400' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 P6G sing 237 n n 
O1 H1 P6G sing 238 n n 
C2 C3 P6G sing 239 n n 
C2 H21 P6G sing 240 n n 
C2 H22 P6G sing 241 n n 
C3 O4 P6G sing 242 n n 
C3 H31 P6G sing 243 n n 
C3 H32 P6G sing 244 n n 
O4 C5 P6G sing 245 n n 
C5 C6 P6G sing 246 n n 
C5 H51 P6G sing 247 n n 
C5 H52 P6G sing 248 n n 
C6 O7 P6G sing 249 n n 
C6 H61 P6G sing 250 n n 
C6 H62 P6G sing 251 n n 
O7 C8 P6G sing 252 n n 
C8 C9 P6G sing 253 n n 
C8 H81 P6G sing 254 n n 
C8 H82 P6G sing 255 n n 
C9 O10 P6G sing 256 n n 
C9 H91 P6G sing 257 n n 
C9 H92 P6G sing 258 n n 
O10 C11 P6G sing 259 n n 
C11 C12 P6G sing 260 n n 
C11 H111 P6G sing 261 n n 
C11 H112 P6G sing 262 n n 
C12 O13 P6G sing 263 n n 
C12 H121 P6G sing 264 n n 
C12 H122 P6G sing 265 n n 
O13 C14 P6G sing 266 n n 
C14 C15 P6G sing 267 n n 
C14 H141 P6G sing 268 n n 
C14 H142 P6G sing 269 n n 
C15 O16 P6G sing 270 n n 
C15 H151 P6G sing 271 n n 
C15 H152 P6G sing 272 n n 
O16 C17 P6G sing 273 n n 
C17 C18 P6G sing 274 n n 
C17 H171 P6G sing 275 n n 
C17 H172 P6G sing 276 n n 
C18 O19 P6G sing 277 n n 
C18 H181 P6G sing 278 n n 
C18 H182 P6G sing 279 n n 
O19 H19 P6G sing 280 n n 
#
_atom_sites.entry_id                     6KM9 
_atom_sites.fract_transf_matrix[1][1]    0.011866 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002211 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013036 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007036 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 P6G A 1 1001 999 P6G P6G . 
D 3 MG A 1 1002 1000 MG MG . 
E 4 TPP A 1 1003 1001 TPP TPP . 
F 5 CA A 1 1004 1000 CA CA . 
G 2 P6G B 1 1001 999 P6G P6G . 
H 3 MG B 1 1002 1000 MG MG . 
I 4 TPP B 1 1003 1001 TPP TPP . 
J 6 HOH A 1 1101 36 HOH HOH . 
J 6 HOH A 2 1102 6 HOH HOH . 
J 6 HOH A 3 1103 91 HOH HOH . 
J 6 HOH A 4 1104 15 HOH HOH . 
J 6 HOH A 5 1105 71 HOH HOH . 
J 6 HOH A 6 1106 133 HOH HOH . 
J 6 HOH A 7 1107 138 HOH HOH . 
J 6 HOH A 8 1108 101 HOH HOH . 
J 6 HOH A 9 1109 34 HOH HOH . 
J 6 HOH A 10 1110 130 HOH HOH . 
J 6 HOH A 11 1111 12 HOH HOH . 
J 6 HOH A 12 1112 114 HOH HOH . 
J 6 HOH A 13 1113 32 HOH HOH . 
J 6 HOH A 14 1114 105 HOH HOH . 
J 6 HOH A 15 1115 49 HOH HOH . 
J 6 HOH A 16 1116 7 HOH HOH . 
J 6 HOH A 17 1117 61 HOH HOH . 
J 6 HOH A 18 1118 65 HOH HOH . 
J 6 HOH A 19 1119 41 HOH HOH . 
J 6 HOH A 20 1120 35 HOH HOH . 
J 6 HOH A 21 1121 5 HOH HOH . 
J 6 HOH A 22 1122 66 HOH HOH . 
J 6 HOH A 23 1123 8 HOH HOH . 
J 6 HOH A 24 1124 92 HOH HOH . 
J 6 HOH A 25 1125 17 HOH HOH . 
J 6 HOH A 26 1126 62 HOH HOH . 
J 6 HOH A 27 1127 119 HOH HOH . 
J 6 HOH A 28 1128 106 HOH HOH . 
J 6 HOH A 29 1129 53 HOH HOH . 
J 6 HOH A 30 1130 28 HOH HOH . 
J 6 HOH A 31 1131 129 HOH HOH . 
J 6 HOH A 32 1132 90 HOH HOH . 
J 6 HOH A 33 1133 77 HOH HOH . 
J 6 HOH A 34 1134 59 HOH HOH . 
J 6 HOH A 35 1135 37 HOH HOH . 
J 6 HOH A 36 1136 82 HOH HOH . 
J 6 HOH A 37 1137 40 HOH HOH . 
J 6 HOH A 38 1138 103 HOH HOH . 
J 6 HOH A 39 1139 104 HOH HOH . 
J 6 HOH A 40 1140 113 HOH HOH . 
J 6 HOH A 41 1141 117 HOH HOH . 
J 6 HOH A 42 1142 88 HOH HOH . 
J 6 HOH A 43 1143 107 HOH HOH . 
J 6 HOH A 44 1144 86 HOH HOH . 
J 6 HOH A 45 1145 80 HOH HOH . 
J 6 HOH A 46 1146 33 HOH HOH . 
J 6 HOH A 47 1147 75 HOH HOH . 
J 6 HOH A 48 1148 94 HOH HOH . 
J 6 HOH A 49 1149 31 HOH HOH . 
J 6 HOH A 50 1150 47 HOH HOH . 
J 6 HOH A 51 1151 19 HOH HOH . 
J 6 HOH A 52 1152 134 HOH HOH . 
J 6 HOH A 53 1153 124 HOH HOH . 
J 6 HOH A 54 1154 27 HOH HOH . 
J 6 HOH A 55 1155 72 HOH HOH . 
J 6 HOH A 56 1156 128 HOH HOH . 
J 6 HOH A 57 1157 38 HOH HOH . 
J 6 HOH A 58 1158 51 HOH HOH . 
J 6 HOH A 59 1159 57 HOH HOH . 
J 6 HOH A 60 1160 56 HOH HOH . 
J 6 HOH A 61 1161 121 HOH HOH . 
J 6 HOH A 62 1162 89 HOH HOH . 
J 6 HOH A 63 1163 97 HOH HOH . 
J 6 HOH A 64 1164 137 HOH HOH . 
J 6 HOH A 65 1165 116 HOH HOH . 
J 6 HOH A 66 1166 122 HOH HOH . 
J 6 HOH A 67 1167 93 HOH HOH . 
J 6 HOH A 68 1168 111 HOH HOH . 
J 6 HOH A 69 1169 139 HOH HOH . 
J 6 HOH A 70 1170 87 HOH HOH . 
K 6 HOH B 1 1101 102 HOH HOH . 
K 6 HOH B 2 1102 112 HOH HOH . 
K 6 HOH B 3 1103 125 HOH HOH . 
K 6 HOH B 4 1104 109 HOH HOH . 
K 6 HOH B 5 1105 13 HOH HOH . 
K 6 HOH B 6 1106 132 HOH HOH . 
K 6 HOH B 7 1107 26 HOH HOH . 
K 6 HOH B 8 1108 98 HOH HOH . 
K 6 HOH B 9 1109 3 HOH HOH . 
K 6 HOH B 10 1110 73 HOH HOH . 
K 6 HOH B 11 1111 74 HOH HOH . 
K 6 HOH B 12 1112 58 HOH HOH . 
K 6 HOH B 13 1113 100 HOH HOH . 
K 6 HOH B 14 1114 55 HOH HOH . 
K 6 HOH B 15 1115 4 HOH HOH . 
K 6 HOH B 16 1116 69 HOH HOH . 
K 6 HOH B 17 1117 123 HOH HOH . 
K 6 HOH B 18 1118 81 HOH HOH . 
K 6 HOH B 19 1119 25 HOH HOH . 
K 6 HOH B 20 1120 30 HOH HOH . 
K 6 HOH B 21 1121 70 HOH HOH . 
K 6 HOH B 22 1122 2 HOH HOH . 
K 6 HOH B 23 1123 29 HOH HOH . 
K 6 HOH B 24 1124 68 HOH HOH . 
K 6 HOH B 25 1125 10 HOH HOH . 
K 6 HOH B 26 1126 24 HOH HOH . 
K 6 HOH B 27 1127 108 HOH HOH . 
K 6 HOH B 28 1128 48 HOH HOH . 
K 6 HOH B 29 1129 14 HOH HOH . 
K 6 HOH B 30 1130 43 HOH HOH . 
K 6 HOH B 31 1131 44 HOH HOH . 
K 6 HOH B 32 1132 45 HOH HOH . 
K 6 HOH B 33 1133 110 HOH HOH . 
K 6 HOH B 34 1134 9 HOH HOH . 
K 6 HOH B 35 1135 42 HOH HOH . 
K 6 HOH B 36 1136 78 HOH HOH . 
K 6 HOH B 37 1137 84 HOH HOH . 
K 6 HOH B 38 1138 39 HOH HOH . 
K 6 HOH B 39 1139 118 HOH HOH . 
K 6 HOH B 40 1140 1 HOH HOH . 
K 6 HOH B 41 1141 52 HOH HOH . 
K 6 HOH B 42 1142 11 HOH HOH . 
K 6 HOH B 43 1143 22 HOH HOH . 
K 6 HOH B 44 1144 60 HOH HOH . 
K 6 HOH B 45 1145 95 HOH HOH . 
K 6 HOH B 46 1146 64 HOH HOH . 
K 6 HOH B 47 1147 131 HOH HOH . 
K 6 HOH B 48 1148 16 HOH HOH . 
K 6 HOH B 49 1149 21 HOH HOH . 
K 6 HOH B 50 1150 20 HOH HOH . 
K 6 HOH B 51 1151 76 HOH HOH . 
K 6 HOH B 52 1152 120 HOH HOH . 
K 6 HOH B 53 1153 63 HOH HOH . 
K 6 HOH B 54 1154 23 HOH HOH . 
K 6 HOH B 55 1155 79 HOH HOH . 
K 6 HOH B 56 1156 46 HOH HOH . 
K 6 HOH B 57 1157 135 HOH HOH . 
K 6 HOH B 58 1158 54 HOH HOH . 
K 6 HOH B 59 1159 83 HOH HOH . 
K 6 HOH B 60 1160 18 HOH HOH . 
K 6 HOH B 61 1161 136 HOH HOH . 
K 6 HOH B 62 1162 85 HOH HOH . 
K 6 HOH B 63 1163 67 HOH HOH . 
K 6 HOH B 64 1164 96 HOH HOH . 
K 6 HOH B 65 1165 99 HOH HOH . 
K 6 HOH B 66 1166 50 HOH HOH . 
K 6 HOH B 67 1167 127 HOH HOH . 
K 6 HOH B 68 1168 126 HOH HOH . 
K 6 HOH B 69 1169 115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 P6G . . . G 2 -10.261 21.478 -31.337 1 53.4 ? O1 P6G 1001 B 1 
HETATM 2 C C2 P6G . . . G 2 -9.616 20.745 -32.345 1 52.94 ? C2 P6G 1001 B 1 
HETATM 3 C C3 P6G . . . G 2 -10.157 21.168 -33.714 1 51.54 ? C3 P6G 1001 B 1 
HETATM 4 O O4 P6G . . . G 2 -9.677 22.437 -34.051 1 50.02 ? O4 P6G 1001 B 1 
HETATM 5 C C5 P6G . . . G 2 -8.839 22.457 -35.171 1 49.35 ? C5 P6G 1001 B 1 
HETATM 6 C C6 P6G . . . G 2 -7.932 23.685 -35.118 1 50.59 ? C6 P6G 1001 B 1 
HETATM 7 O O7 P6G . . . G 2 -6.912 23.494 -34.172 1 52.54 ? O7 P6G 1001 B 1 
HETATM 8 C C8 P6G . . . G 2 -5.633 23.844 -34.635 1 53.44 ? C8 P6G 1001 B 1 
HETATM 9 C C9 P6G . . . G 2 -4.572 23.665 -33.549 1 54.59 ? C9 P6G 1001 B 1 
HETATM 10 O O10 P6G . . . G 2 -4.482 24.831 -32.777 1 56.99 ? O10 P6G 1001 B 1 
HETATM 11 C C11 P6G . . . G 2 -3.797 24.676 -31.566 1 58.66 ? C11 P6G 1001 B 1 
HETATM 12 C C12 P6G . . . G 2 -2.403 25.294 -31.675 1 60.76 ? C12 P6G 1001 B 1 
HETATM 13 O O13 P6G . . . G 2 -1.54 24.71 -30.737 1 63.18 ? O13 P6G 1001 B 1 
HETATM 14 C C14 P6G . . . G 2 -0.189 24.714 -31.112 1 65.42 ? C14 P6G 1001 B 1 
HETATM 15 C C15 P6G . . . G 2 0.262 26.127 -31.501 1 67.1 ? C15 P6G 1001 B 1 
HETATM 16 O O16 P6G . . . G 2 1.627 26.125 -31.834 1 67.47 ? O16 P6G 1001 B 1 
HETATM 17 C C17 P6G . . . G 2 2.14 27.383 -32.171 1 67.87 ? C17 P6G 1001 B 1 
HETATM 18 C C18 P6G . . . G 2 1.775 28.398 -31.088 1 68.26 ? C18 P6G 1001 B 1 
HETATM 19 O O19 P6G . . . G 2 2.622 29.511 -31.179 1 68.64 ? O19 P6G 1001 B 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           19 
#