data_6KM9 # _model_server_result.job_id huR9WSiWOXUBfq-MclwPkQ _model_server_result.datetime_utc '2024-10-10 14:21:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6km9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1004}' # _entry.id 6KM9 # _exptl.entry_id 6KM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.56 _cell.angle_gamma 90 _cell.entry_id 6KM9 _cell.length_a 84.271 _cell.length_b 76.708 _cell.length_c 144.579 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 305 A ASP 360 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc2 A OD1 ASN 338 A ASN 393 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc3 A O VAL 340 A VAL 395 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc4 A OE1 GLU 610 A GLU 665 1_555 F CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc5 D MG MG . A MG 1002 1_555 E O1A TPP . A TPP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc6 D MG MG . A MG 1002 1_555 E O1B TPP . A TPP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc7 D MG MG . A MG 1002 1_555 J O HOH . A HOH 1121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc8 F CA CA . A CA 1004 1_555 B OE1 GLU 610 B GLU 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc9 B OD1 ASP 305 B ASP 360 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc10 B OD1 ASN 338 B ASN 393 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc11 B O VAL 340 B VAL 395 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc12 H MG MG . B MG 1002 1_555 I O1A TPP . B TPP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc13 H MG MG . B MG 1002 1_555 I O3B TPP . B TPP 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6KM9 _atom_sites.fract_transf_matrix[1][1] 0.011866 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002211 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P6G A 1 1001 999 P6G P6G . D 3 MG A 1 1002 1000 MG MG . E 4 TPP A 1 1003 1001 TPP TPP . F 5 CA A 1 1004 1000 CA CA . G 2 P6G B 1 1001 999 P6G P6G . H 3 MG B 1 1002 1000 MG MG . I 4 TPP B 1 1003 1001 TPP TPP . J 6 HOH A 1 1101 36 HOH HOH . J 6 HOH A 2 1102 6 HOH HOH . J 6 HOH A 3 1103 91 HOH HOH . J 6 HOH A 4 1104 15 HOH HOH . J 6 HOH A 5 1105 71 HOH HOH . J 6 HOH A 6 1106 133 HOH HOH . J 6 HOH A 7 1107 138 HOH HOH . J 6 HOH A 8 1108 101 HOH HOH . J 6 HOH A 9 1109 34 HOH HOH . J 6 HOH A 10 1110 130 HOH HOH . J 6 HOH A 11 1111 12 HOH HOH . J 6 HOH A 12 1112 114 HOH HOH . J 6 HOH A 13 1113 32 HOH HOH . J 6 HOH A 14 1114 105 HOH HOH . J 6 HOH A 15 1115 49 HOH HOH . J 6 HOH A 16 1116 7 HOH HOH . J 6 HOH A 17 1117 61 HOH HOH . J 6 HOH A 18 1118 65 HOH HOH . J 6 HOH A 19 1119 41 HOH HOH . J 6 HOH A 20 1120 35 HOH HOH . J 6 HOH A 21 1121 5 HOH HOH . J 6 HOH A 22 1122 66 HOH HOH . J 6 HOH A 23 1123 8 HOH HOH . J 6 HOH A 24 1124 92 HOH HOH . J 6 HOH A 25 1125 17 HOH HOH . J 6 HOH A 26 1126 62 HOH HOH . J 6 HOH A 27 1127 119 HOH HOH . J 6 HOH A 28 1128 106 HOH HOH . J 6 HOH A 29 1129 53 HOH HOH . J 6 HOH A 30 1130 28 HOH HOH . J 6 HOH A 31 1131 129 HOH HOH . J 6 HOH A 32 1132 90 HOH HOH . J 6 HOH A 33 1133 77 HOH HOH . J 6 HOH A 34 1134 59 HOH HOH . J 6 HOH A 35 1135 37 HOH HOH . J 6 HOH A 36 1136 82 HOH HOH . J 6 HOH A 37 1137 40 HOH HOH . J 6 HOH A 38 1138 103 HOH HOH . J 6 HOH A 39 1139 104 HOH HOH . J 6 HOH A 40 1140 113 HOH HOH . J 6 HOH A 41 1141 117 HOH HOH . J 6 HOH A 42 1142 88 HOH HOH . J 6 HOH A 43 1143 107 HOH HOH . J 6 HOH A 44 1144 86 HOH HOH . J 6 HOH A 45 1145 80 HOH HOH . J 6 HOH A 46 1146 33 HOH HOH . J 6 HOH A 47 1147 75 HOH HOH . J 6 HOH A 48 1148 94 HOH HOH . J 6 HOH A 49 1149 31 HOH HOH . J 6 HOH A 50 1150 47 HOH HOH . J 6 HOH A 51 1151 19 HOH HOH . J 6 HOH A 52 1152 134 HOH HOH . J 6 HOH A 53 1153 124 HOH HOH . J 6 HOH A 54 1154 27 HOH HOH . J 6 HOH A 55 1155 72 HOH HOH . J 6 HOH A 56 1156 128 HOH HOH . J 6 HOH A 57 1157 38 HOH HOH . J 6 HOH A 58 1158 51 HOH HOH . J 6 HOH A 59 1159 57 HOH HOH . J 6 HOH A 60 1160 56 HOH HOH . J 6 HOH A 61 1161 121 HOH HOH . J 6 HOH A 62 1162 89 HOH HOH . J 6 HOH A 63 1163 97 HOH HOH . J 6 HOH A 64 1164 137 HOH HOH . J 6 HOH A 65 1165 116 HOH HOH . J 6 HOH A 66 1166 122 HOH HOH . J 6 HOH A 67 1167 93 HOH HOH . J 6 HOH A 68 1168 111 HOH HOH . J 6 HOH A 69 1169 139 HOH HOH . J 6 HOH A 70 1170 87 HOH HOH . K 6 HOH B 1 1101 102 HOH HOH . K 6 HOH B 2 1102 112 HOH HOH . K 6 HOH B 3 1103 125 HOH HOH . K 6 HOH B 4 1104 109 HOH HOH . K 6 HOH B 5 1105 13 HOH HOH . K 6 HOH B 6 1106 132 HOH HOH . K 6 HOH B 7 1107 26 HOH HOH . K 6 HOH B 8 1108 98 HOH HOH . K 6 HOH B 9 1109 3 HOH HOH . K 6 HOH B 10 1110 73 HOH HOH . K 6 HOH B 11 1111 74 HOH HOH . K 6 HOH B 12 1112 58 HOH HOH . K 6 HOH B 13 1113 100 HOH HOH . K 6 HOH B 14 1114 55 HOH HOH . K 6 HOH B 15 1115 4 HOH HOH . K 6 HOH B 16 1116 69 HOH HOH . K 6 HOH B 17 1117 123 HOH HOH . K 6 HOH B 18 1118 81 HOH HOH . K 6 HOH B 19 1119 25 HOH HOH . K 6 HOH B 20 1120 30 HOH HOH . K 6 HOH B 21 1121 70 HOH HOH . K 6 HOH B 22 1122 2 HOH HOH . K 6 HOH B 23 1123 29 HOH HOH . K 6 HOH B 24 1124 68 HOH HOH . K 6 HOH B 25 1125 10 HOH HOH . K 6 HOH B 26 1126 24 HOH HOH . K 6 HOH B 27 1127 108 HOH HOH . K 6 HOH B 28 1128 48 HOH HOH . K 6 HOH B 29 1129 14 HOH HOH . K 6 HOH B 30 1130 43 HOH HOH . K 6 HOH B 31 1131 44 HOH HOH . K 6 HOH B 32 1132 45 HOH HOH . K 6 HOH B 33 1133 110 HOH HOH . K 6 HOH B 34 1134 9 HOH HOH . K 6 HOH B 35 1135 42 HOH HOH . K 6 HOH B 36 1136 78 HOH HOH . K 6 HOH B 37 1137 84 HOH HOH . K 6 HOH B 38 1138 39 HOH HOH . K 6 HOH B 39 1139 118 HOH HOH . K 6 HOH B 40 1140 1 HOH HOH . K 6 HOH B 41 1141 52 HOH HOH . K 6 HOH B 42 1142 11 HOH HOH . K 6 HOH B 43 1143 22 HOH HOH . K 6 HOH B 44 1144 60 HOH HOH . K 6 HOH B 45 1145 95 HOH HOH . K 6 HOH B 46 1146 64 HOH HOH . K 6 HOH B 47 1147 131 HOH HOH . K 6 HOH B 48 1148 16 HOH HOH . K 6 HOH B 49 1149 21 HOH HOH . K 6 HOH B 50 1150 20 HOH HOH . K 6 HOH B 51 1151 76 HOH HOH . K 6 HOH B 52 1152 120 HOH HOH . K 6 HOH B 53 1153 63 HOH HOH . K 6 HOH B 54 1154 23 HOH HOH . K 6 HOH B 55 1155 79 HOH HOH . K 6 HOH B 56 1156 46 HOH HOH . K 6 HOH B 57 1157 135 HOH HOH . K 6 HOH B 58 1158 54 HOH HOH . K 6 HOH B 59 1159 83 HOH HOH . K 6 HOH B 60 1160 18 HOH HOH . K 6 HOH B 61 1161 136 HOH HOH . K 6 HOH B 62 1162 85 HOH HOH . K 6 HOH B 63 1163 67 HOH HOH . K 6 HOH B 64 1164 96 HOH HOH . K 6 HOH B 65 1165 99 HOH HOH . K 6 HOH B 66 1166 50 HOH HOH . K 6 HOH B 67 1167 127 HOH HOH . K 6 HOH B 68 1168 126 HOH HOH . K 6 HOH B 69 1169 115 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x -21.288 _atom_site.Cartn_y 5.418 _atom_site.Cartn_z -35.005 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1004 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #