data_6KNK # _model_server_result.job_id 36NHRD0tAdg_i-PZnN_Vnw _model_server_result.datetime_utc '2024-11-05 06:56:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6knk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 6KNK # _exptl.entry_id 6KNK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 234.207 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-{2-[(2-AMINOETHYL)AMINO]-2-OXOETHYL}-2-HYDROXYBUTANEDIOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.07 _cell.angle_gamma 90 _cell.entry_id 6KNK _cell.length_a 176.299 _cell.length_b 80.325 _cell.length_c 111.524 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,H,I 1 1 C,G,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H14 N2 O6' _chem_comp.formula_weight 234.207 _chem_comp.id X3J _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-{2-[(2-AMINOETHYL)AMINO]-2-OXOETHYL}-2-HYDROXYBUTANEDIOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C' O1' X3J sing 435 n n C' O2' X3J doub 436 n n C' C1 X3J sing 437 n n C1 CAP X3J sing 438 n n C3 N3 X3J sing 439 n n C3 C4 X3J sing 440 n n O3 CAP X3J sing 441 n n CM3 O3' X3J sing 442 n n CM3 CAP X3J sing 443 n n CM3 OAF X3J doub 444 n n C4 N4 X3J sing 445 n n N4 C4' X3J sing 446 n n C4' O4 X3J doub 447 n n C4' CM4 X3J sing 448 n n CM4 CAP X3J sing 449 n n O1' H1' X3J sing 450 n n C1 H11C X3J sing 451 n n C1 H12C X3J sing 452 n n C3 H31C X3J sing 453 n n C3 H32C X3J sing 454 n n N3 H31N X3J sing 455 n n N3 H32N X3J sing 456 n n C4 H41C X3J sing 457 n n C4 H42C X3J sing 458 n n O3 H3 X3J sing 459 n n O3' H3' X3J sing 460 n n N4 H4 X3J sing 461 n n CM4 HM41 X3J sing 462 n n CM4 HM42 X3J sing 463 n n # _atom_sites.entry_id 6KNK _atom_sites.fract_transf_matrix[1][1] 0.005672 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001213 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012449 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009169 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 DN9 A 1 501 1 DN9 P3C . E 3 PO4 B 1 501 2 PO4 PO4 . F 4 X3J B 1 502 1 X3J X3J . G 3 PO4 C 1 501 1 PO4 PO4 . H 5 HOH A 1 601 291 HOH HOH . H 5 HOH A 2 602 295 HOH HOH . H 5 HOH A 3 603 32 HOH HOH . H 5 HOH A 4 604 12 HOH HOH . H 5 HOH A 5 605 270 HOH HOH . H 5 HOH A 6 606 6 HOH HOH . H 5 HOH A 7 607 194 HOH HOH . H 5 HOH A 8 608 26 HOH HOH . H 5 HOH A 9 609 49 HOH HOH . H 5 HOH A 10 610 62 HOH HOH . H 5 HOH A 11 611 95 HOH HOH . H 5 HOH A 12 612 18 HOH HOH . H 5 HOH A 13 613 299 HOH HOH . H 5 HOH A 14 614 5 HOH HOH . H 5 HOH A 15 615 131 HOH HOH . H 5 HOH A 16 616 219 HOH HOH . H 5 HOH A 17 617 283 HOH HOH . H 5 HOH A 18 618 67 HOH HOH . H 5 HOH A 19 619 196 HOH HOH . H 5 HOH A 20 620 72 HOH HOH . H 5 HOH A 21 621 11 HOH HOH . H 5 HOH A 22 622 173 HOH HOH . H 5 HOH A 23 623 169 HOH HOH . H 5 HOH A 24 624 223 HOH HOH . H 5 HOH A 25 625 288 HOH HOH . H 5 HOH A 26 626 150 HOH HOH . H 5 HOH A 27 627 164 HOH HOH . H 5 HOH A 28 628 53 HOH HOH . H 5 HOH A 29 629 27 HOH HOH . H 5 HOH A 30 630 250 HOH HOH . H 5 HOH A 31 631 141 HOH HOH . H 5 HOH A 32 632 107 HOH HOH . H 5 HOH A 33 633 114 HOH HOH . H 5 HOH A 34 634 15 HOH HOH . H 5 HOH A 35 635 240 HOH HOH . H 5 HOH A 36 636 80 HOH HOH . H 5 HOH A 37 637 207 HOH HOH . H 5 HOH A 38 638 182 HOH HOH . H 5 HOH A 39 639 9 HOH HOH . H 5 HOH A 40 640 55 HOH HOH . H 5 HOH A 41 641 244 HOH HOH . H 5 HOH A 42 642 132 HOH HOH . H 5 HOH A 43 643 73 HOH HOH . H 5 HOH A 44 644 52 HOH HOH . H 5 HOH A 45 645 220 HOH HOH . H 5 HOH A 46 646 255 HOH HOH . H 5 HOH A 47 647 172 HOH HOH . H 5 HOH A 48 648 135 HOH HOH . H 5 HOH A 49 649 231 HOH HOH . H 5 HOH A 50 650 245 HOH HOH . H 5 HOH A 51 651 286 HOH HOH . H 5 HOH A 52 652 289 HOH HOH . H 5 HOH A 53 653 247 HOH HOH . H 5 HOH A 54 654 108 HOH HOH . H 5 HOH A 55 655 222 HOH HOH . H 5 HOH A 56 656 94 HOH HOH . H 5 HOH A 57 657 149 HOH HOH . H 5 HOH A 58 658 157 HOH HOH . H 5 HOH A 59 659 69 HOH HOH . H 5 HOH A 60 660 10 HOH HOH . H 5 HOH A 61 661 92 HOH HOH . H 5 HOH A 62 662 237 HOH HOH . H 5 HOH A 63 663 170 HOH HOH . H 5 HOH A 64 664 287 HOH HOH . H 5 HOH A 65 665 35 HOH HOH . H 5 HOH A 66 666 254 HOH HOH . H 5 HOH A 67 667 273 HOH HOH . H 5 HOH A 68 668 21 HOH HOH . H 5 HOH A 69 669 48 HOH HOH . H 5 HOH A 70 670 102 HOH HOH . H 5 HOH A 71 671 206 HOH HOH . H 5 HOH A 72 672 142 HOH HOH . H 5 HOH A 73 673 208 HOH HOH . H 5 HOH A 74 674 128 HOH HOH . H 5 HOH A 75 675 281 HOH HOH . H 5 HOH A 76 676 267 HOH HOH . H 5 HOH A 77 677 252 HOH HOH . H 5 HOH A 78 678 292 HOH HOH . H 5 HOH A 79 679 171 HOH HOH . H 5 HOH A 80 680 146 HOH HOH . H 5 HOH A 81 681 195 HOH HOH . H 5 HOH A 82 682 306 HOH HOH . H 5 HOH A 83 683 174 HOH HOH . H 5 HOH A 84 684 276 HOH HOH . I 5 HOH B 1 601 37 HOH HOH . I 5 HOH B 2 602 51 HOH HOH . I 5 HOH B 3 603 14 HOH HOH . I 5 HOH B 4 604 130 HOH HOH . I 5 HOH B 5 605 303 HOH HOH . I 5 HOH B 6 606 239 HOH HOH . I 5 HOH B 7 607 241 HOH HOH . I 5 HOH B 8 608 20 HOH HOH . I 5 HOH B 9 609 110 HOH HOH . I 5 HOH B 10 610 198 HOH HOH . I 5 HOH B 11 611 213 HOH HOH . I 5 HOH B 12 612 31 HOH HOH . I 5 HOH B 13 613 302 HOH HOH . I 5 HOH B 14 614 261 HOH HOH . I 5 HOH B 15 615 191 HOH HOH . I 5 HOH B 16 616 235 HOH HOH . I 5 HOH B 17 617 215 HOH HOH . I 5 HOH B 18 618 116 HOH HOH . I 5 HOH B 19 619 284 HOH HOH . I 5 HOH B 20 620 71 HOH HOH . I 5 HOH B 21 621 4 HOH HOH . I 5 HOH B 22 622 16 HOH HOH . I 5 HOH B 23 623 42 HOH HOH . I 5 HOH B 24 624 8 HOH HOH . I 5 HOH B 25 625 251 HOH HOH . I 5 HOH B 26 626 105 HOH HOH . I 5 HOH B 27 627 36 HOH HOH . I 5 HOH B 28 628 82 HOH HOH . I 5 HOH B 29 629 212 HOH HOH . I 5 HOH B 30 630 218 HOH HOH . I 5 HOH B 31 631 98 HOH HOH . I 5 HOH B 32 632 204 HOH HOH . I 5 HOH B 33 633 308 HOH HOH . I 5 HOH B 34 634 17 HOH HOH . I 5 HOH B 35 635 300 HOH HOH . I 5 HOH B 36 636 293 HOH HOH . I 5 HOH B 37 637 13 HOH HOH . I 5 HOH B 38 638 246 HOH HOH . I 5 HOH B 39 639 193 HOH HOH . I 5 HOH B 40 640 234 HOH HOH . I 5 HOH B 41 641 46 HOH HOH . I 5 HOH B 42 642 156 HOH HOH . I 5 HOH B 43 643 91 HOH HOH . I 5 HOH B 44 644 66 HOH HOH . I 5 HOH B 45 645 183 HOH HOH . I 5 HOH B 46 646 143 HOH HOH . I 5 HOH B 47 647 238 HOH HOH . I 5 HOH B 48 648 161 HOH HOH . I 5 HOH B 49 649 229 HOH HOH . I 5 HOH B 50 650 277 HOH HOH . I 5 HOH B 51 651 160 HOH HOH . I 5 HOH B 52 652 120 HOH HOH . I 5 HOH B 53 653 253 HOH HOH . I 5 HOH B 54 654 38 HOH HOH . I 5 HOH B 55 655 179 HOH HOH . I 5 HOH B 56 656 230 HOH HOH . I 5 HOH B 57 657 125 HOH HOH . I 5 HOH B 58 658 209 HOH HOH . I 5 HOH B 59 659 76 HOH HOH . I 5 HOH B 60 660 70 HOH HOH . I 5 HOH B 61 661 126 HOH HOH . I 5 HOH B 62 662 304 HOH HOH . I 5 HOH B 63 663 61 HOH HOH . I 5 HOH B 64 664 260 HOH HOH . I 5 HOH B 65 665 232 HOH HOH . I 5 HOH B 66 666 256 HOH HOH . I 5 HOH B 67 667 65 HOH HOH . I 5 HOH B 68 668 205 HOH HOH . I 5 HOH B 69 669 134 HOH HOH . I 5 HOH B 70 670 228 HOH HOH . I 5 HOH B 71 671 197 HOH HOH . I 5 HOH B 72 672 112 HOH HOH . I 5 HOH B 73 673 290 HOH HOH . I 5 HOH B 74 674 23 HOH HOH . I 5 HOH B 75 675 124 HOH HOH . I 5 HOH B 76 676 75 HOH HOH . I 5 HOH B 77 677 30 HOH HOH . I 5 HOH B 78 678 96 HOH HOH . I 5 HOH B 79 679 129 HOH HOH . I 5 HOH B 80 680 199 HOH HOH . I 5 HOH B 81 681 294 HOH HOH . I 5 HOH B 82 682 297 HOH HOH . I 5 HOH B 83 683 81 HOH HOH . I 5 HOH B 84 684 104 HOH HOH . I 5 HOH B 85 685 285 HOH HOH . I 5 HOH B 86 686 217 HOH HOH . I 5 HOH B 87 687 248 HOH HOH . I 5 HOH B 88 688 243 HOH HOH . I 5 HOH B 89 689 33 HOH HOH . I 5 HOH B 90 690 122 HOH HOH . I 5 HOH B 91 691 265 HOH HOH . I 5 HOH B 92 692 111 HOH HOH . I 5 HOH B 93 693 264 HOH HOH . I 5 HOH B 94 694 113 HOH HOH . I 5 HOH B 95 695 192 HOH HOH . I 5 HOH B 96 696 275 HOH HOH . I 5 HOH B 97 697 274 HOH HOH . I 5 HOH B 98 698 58 HOH HOH . I 5 HOH B 99 699 269 HOH HOH . I 5 HOH B 100 700 168 HOH HOH . I 5 HOH B 101 701 221 HOH HOH . I 5 HOH B 102 702 242 HOH HOH . I 5 HOH B 103 703 280 HOH HOH . I 5 HOH B 104 704 263 HOH HOH . I 5 HOH B 105 705 166 HOH HOH . I 5 HOH B 106 706 233 HOH HOH . I 5 HOH B 107 707 184 HOH HOH . J 5 HOH C 1 601 203 HOH HOH . J 5 HOH C 2 602 178 HOH HOH . J 5 HOH C 3 603 296 HOH HOH . J 5 HOH C 4 604 227 HOH HOH . J 5 HOH C 5 605 224 HOH HOH . J 5 HOH C 6 606 84 HOH HOH . J 5 HOH C 7 607 190 HOH HOH . J 5 HOH C 8 608 1 HOH HOH . J 5 HOH C 9 609 282 HOH HOH . J 5 HOH C 10 610 180 HOH HOH . J 5 HOH C 11 611 147 HOH HOH . J 5 HOH C 12 612 2 HOH HOH . J 5 HOH C 13 613 115 HOH HOH . J 5 HOH C 14 614 121 HOH HOH . J 5 HOH C 15 615 266 HOH HOH . J 5 HOH C 16 616 152 HOH HOH . J 5 HOH C 17 617 50 HOH HOH . J 5 HOH C 18 618 200 HOH HOH . J 5 HOH C 19 619 151 HOH HOH . J 5 HOH C 20 620 175 HOH HOH . J 5 HOH C 21 621 22 HOH HOH . J 5 HOH C 22 622 226 HOH HOH . J 5 HOH C 23 623 176 HOH HOH . J 5 HOH C 24 624 307 HOH HOH . J 5 HOH C 25 625 181 HOH HOH . J 5 HOH C 26 626 216 HOH HOH . J 5 HOH C 27 627 140 HOH HOH . J 5 HOH C 28 628 210 HOH HOH . J 5 HOH C 29 629 186 HOH HOH . J 5 HOH C 30 630 162 HOH HOH . J 5 HOH C 31 631 272 HOH HOH . J 5 HOH C 32 632 77 HOH HOH . J 5 HOH C 33 633 298 HOH HOH . J 5 HOH C 34 634 225 HOH HOH . J 5 HOH C 35 635 301 HOH HOH . J 5 HOH C 36 636 99 HOH HOH . J 5 HOH C 37 637 177 HOH HOH . J 5 HOH C 38 638 214 HOH HOH . J 5 HOH C 39 639 74 HOH HOH . J 5 HOH C 40 640 93 HOH HOH . J 5 HOH C 41 641 165 HOH HOH . J 5 HOH C 42 642 54 HOH HOH . J 5 HOH C 43 643 189 HOH HOH . J 5 HOH C 44 644 3 HOH HOH . J 5 HOH C 45 645 44 HOH HOH . J 5 HOH C 46 646 163 HOH HOH . J 5 HOH C 47 647 271 HOH HOH . J 5 HOH C 48 648 211 HOH HOH . J 5 HOH C 49 649 101 HOH HOH . J 5 HOH C 50 650 202 HOH HOH . J 5 HOH C 51 651 63 HOH HOH . J 5 HOH C 52 652 310 HOH HOH . J 5 HOH C 53 653 309 HOH HOH . J 5 HOH C 54 654 305 HOH HOH . J 5 HOH C 55 655 167 HOH HOH . J 5 HOH C 56 656 249 HOH HOH . J 5 HOH C 57 657 279 HOH HOH . J 5 HOH C 58 658 59 HOH HOH . J 5 HOH C 59 659 39 HOH HOH . J 5 HOH C 60 660 78 HOH HOH . J 5 HOH C 61 661 201 HOH HOH . J 5 HOH C 62 662 24 HOH HOH . J 5 HOH C 63 663 86 HOH HOH . J 5 HOH C 64 664 188 HOH HOH . J 5 HOH C 65 665 47 HOH HOH . J 5 HOH C 66 666 148 HOH HOH . J 5 HOH C 67 667 89 HOH HOH . J 5 HOH C 68 668 68 HOH HOH . J 5 HOH C 69 669 145 HOH HOH . J 5 HOH C 70 670 88 HOH HOH . J 5 HOH C 71 671 64 HOH HOH . J 5 HOH C 72 672 103 HOH HOH . J 5 HOH C 73 673 106 HOH HOH . J 5 HOH C 74 674 28 HOH HOH . J 5 HOH C 75 675 41 HOH HOH . J 5 HOH C 76 676 117 HOH HOH . J 5 HOH C 77 677 87 HOH HOH . J 5 HOH C 78 678 118 HOH HOH . J 5 HOH C 79 679 19 HOH HOH . J 5 HOH C 80 680 185 HOH HOH . J 5 HOH C 81 681 85 HOH HOH . J 5 HOH C 82 682 155 HOH HOH . J 5 HOH C 83 683 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C' X3J . . . F 4 43.206 -34.076 -39.987 1 50.75 ? C' X3J 502 B 1 HETATM 2 O O1' X3J . . . F 4 42.834 -33.762 -38.885 1 52.17 ? O1' X3J 502 B 1 HETATM 3 O O2' X3J . . . F 4 44.447 -33.965 -40.371 1 48.6 ? O2' X3J 502 B 1 HETATM 4 C C1 X3J . . . F 4 42.275 -34.629 -41.041 1 50.64 ? C1 X3J 502 B 1 HETATM 5 C C3 X3J . . . F 4 38.456 -29.705 -43.247 1 53.31 ? C3 X3J 502 B 1 HETATM 6 N N3 X3J . . . F 4 39.32 -29.085 -42.249 1 52.96 ? N3 X3J 502 B 1 HETATM 7 O O3 X3J . . . F 4 42.685 -33.379 -43.047 1 52.86 ? O3 X3J 502 B 1 HETATM 8 C CM3 X3J . . . F 4 41.395 -32.276 -41.337 1 50.36 ? CM3 X3J 502 B 1 HETATM 9 O O3' X3J . . . F 4 40.594 -32.19 -40.425 1 49.6 ? O3' X3J 502 B 1 HETATM 10 C C4 X3J . . . F 4 39.167 -30.834 -44.043 1 53.18 ? C4 X3J 502 B 1 HETATM 11 N N4 X3J . . . F 4 39.259 -32.098 -43.321 1 53.03 ? N4 X3J 502 B 1 HETATM 12 C C4' X3J . . . F 4 39.925 -33.161 -43.777 1 51.46 ? C4' X3J 502 B 1 HETATM 13 C CAP X3J . . . F 4 41.708 -33.601 -42.031 1 50.76 ? CAP X3J 502 B 1 HETATM 14 O O4 X3J . . . F 4 40.142 -33.357 -44.97 1 50.54 ? O4 X3J 502 B 1 HETATM 15 C CM4 X3J . . . F 4 40.431 -34.111 -42.713 1 50.87 ? CM4 X3J 502 B 1 HETATM 16 O OAF X3J . . . F 4 42.056 -31.27 -41.836 1 49.12 ? OAF X3J 502 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #