data_6KNL
#
_model_server_result.job_id            7N5-LxUuh724DYH00Uq8sw 
_model_server_result.datetime_utc      '2024-12-05 02:27:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6knl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    6KNL 
#
_exptl.entry_id    6KNL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              257.955 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TRIPHOSPHATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KNL 
_cell.length_a            119.464 
_cell.length_b            119.464 
_cell.length_c            108.374 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KNL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'H5 O10 P3' 
_chem_comp.formula_weight    257.955 
_chem_comp.id                3PO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TRIPHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G 3PO doub 1 n n 
PG O2G 3PO sing 2 n n 
PG O3G 3PO sing 3 n n 
PG O3B 3PO sing 4 n n 
O2G HOG2 3PO sing 5 n n 
O3G HOG3 3PO sing 6 n n 
PB O1B 3PO doub 7 n n 
PB O2B 3PO sing 8 n n 
PB O3B 3PO sing 9 n n 
PB O3A 3PO sing 10 n n 
O2B HOB2 3PO sing 11 n n 
PA O1A 3PO doub 12 n n 
PA O2A 3PO sing 13 n n 
PA O3A 3PO sing 14 n n 
PA O5' 3PO sing 15 n n 
O2A HOA2 3PO sing 16 n n 
O5' HO5' 3PO sing 17 n n 
#
_atom_sites.entry_id                     6KNL 
_atom_sites.fract_transf_matrix[1][1]    0.008371 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008371 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009227 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 URI A 1 301 2 URI URI . 
D 3 3PO A 1 302 2 3PO 3PO . 
E 2 URI B 1 301 1 URI URI . 
F 3 3PO B 1 302 1 3PO 3PO . 
G 4 SO4 B 1 303 1 SO4 SO4 . 
H 4 SO4 B 1 304 2 SO4 SO4 . 
I 5 EDO B 1 305 1 EDO EDO . 
J 6 HOH A 1 401 33 HOH HOH . 
J 6 HOH A 2 402 31 HOH HOH . 
J 6 HOH A 3 403 5 HOH HOH . 
J 6 HOH A 4 404 36 HOH HOH . 
J 6 HOH A 5 405 27 HOH HOH . 
J 6 HOH A 6 406 7 HOH HOH . 
J 6 HOH A 7 407 11 HOH HOH . 
K 6 HOH B 1 401 12 HOH HOH . 
K 6 HOH B 2 402 18 HOH HOH . 
K 6 HOH B 3 403 30 HOH HOH . 
K 6 HOH B 4 404 4 HOH HOH . 
K 6 HOH B 5 405 26 HOH HOH . 
K 6 HOH B 6 406 13 HOH HOH . 
K 6 HOH B 7 407 19 HOH HOH . 
K 6 HOH B 8 408 23 HOH HOH . 
K 6 HOH B 9 409 34 HOH HOH . 
K 6 HOH B 10 410 28 HOH HOH . 
K 6 HOH B 11 411 10 HOH HOH . 
K 6 HOH B 12 412 21 HOH HOH . 
K 6 HOH B 13 413 8 HOH HOH . 
K 6 HOH B 14 414 24 HOH HOH . 
K 6 HOH B 15 415 25 HOH HOH . 
K 6 HOH B 16 416 14 HOH HOH . 
K 6 HOH B 17 417 2 HOH HOH . 
K 6 HOH B 18 418 32 HOH HOH . 
K 6 HOH B 19 419 17 HOH HOH . 
K 6 HOH B 20 420 6 HOH HOH . 
K 6 HOH B 21 421 29 HOH HOH . 
K 6 HOH B 22 422 15 HOH HOH . 
K 6 HOH B 23 423 16 HOH HOH . 
K 6 HOH B 24 424 35 HOH HOH . 
K 6 HOH B 25 425 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG 3PO . . . D 3 16.226 8.125 -18.55 1 99.6 ? PG 3PO 302 A 1 
HETATM 2 O O1G 3PO . . . D 3 16.052 9.6 -18.274 1 82.25 ? O1G 3PO 302 A 1 
HETATM 3 O O2G 3PO . . . D 3 15.054 7.313 -18.054 1 90.56 ? O2G 3PO 302 A 1 
HETATM 4 O O3G 3PO . . . D 3 17.562 7.605 -18.06 1 91.9 ? O3G 3PO 302 A 1 
HETATM 5 P PB 3PO . . . D 3 15.864 6.635 -21.102 1 128.61 ? PB 3PO 302 A 1 
HETATM 6 O O1B 3PO . . . D 3 14.409 6.352 -20.92 1 135.86 ? O1B 3PO 302 A 1 
HETATM 7 O O2B 3PO . . . D 3 16.857 5.558 -20.806 1 125.44 ? O2B 3PO 302 A 1 
HETATM 8 O O3B 3PO . . . D 3 16.219 7.903 -20.174 1 116.77 ? O3B 3PO 302 A 1 
HETATM 9 P PA 3PO . . . D 3 15.559 6.753 -24.103 1 125.86 ? PA 3PO 302 A 1 
HETATM 10 O O1A 3PO . . . D 3 16.776 6.386 -24.925 1 117.55 ? O1A 3PO 302 A 1 
HETATM 11 O O2A 3PO . . . D 3 14.865 7.99 -24.626 1 113.58 ? O2A 3PO 302 A 1 
HETATM 12 O O3A 3PO . . . D 3 16.099 7.155 -22.609 1 129.23 ? O3A 3PO 302 A 1 
HETATM 13 O O5' 3PO . . . D 3 14.609 5.588 -23.937 1 128.24 ? O5' 3PO 302 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           528 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#