data_6KNL # _model_server_result.job_id cHpBkAr0Dc4QjXVGAD1prQ _model_server_result.datetime_utc '2024-12-05 02:22:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6knl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":305}' # _entry.id 6KNL # _exptl.entry_id 6KNL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KNL _cell.length_a 119.464 _cell.length_b 119.464 _cell.length_c 108.374 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KNL _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 100 n n C1 C2 EDO sing 101 n n C1 H11 EDO sing 102 n n C1 H12 EDO sing 103 n n O1 HO1 EDO sing 104 n n C2 O2 EDO sing 105 n n C2 H21 EDO sing 106 n n C2 H22 EDO sing 107 n n O2 HO2 EDO sing 108 n n # _atom_sites.entry_id 6KNL _atom_sites.fract_transf_matrix[1][1] 0.008371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 URI A 1 301 2 URI URI . D 3 3PO A 1 302 2 3PO 3PO . E 2 URI B 1 301 1 URI URI . F 3 3PO B 1 302 1 3PO 3PO . G 4 SO4 B 1 303 1 SO4 SO4 . H 4 SO4 B 1 304 2 SO4 SO4 . I 5 EDO B 1 305 1 EDO EDO . J 6 HOH A 1 401 33 HOH HOH . J 6 HOH A 2 402 31 HOH HOH . J 6 HOH A 3 403 5 HOH HOH . J 6 HOH A 4 404 36 HOH HOH . J 6 HOH A 5 405 27 HOH HOH . J 6 HOH A 6 406 7 HOH HOH . J 6 HOH A 7 407 11 HOH HOH . K 6 HOH B 1 401 12 HOH HOH . K 6 HOH B 2 402 18 HOH HOH . K 6 HOH B 3 403 30 HOH HOH . K 6 HOH B 4 404 4 HOH HOH . K 6 HOH B 5 405 26 HOH HOH . K 6 HOH B 6 406 13 HOH HOH . K 6 HOH B 7 407 19 HOH HOH . K 6 HOH B 8 408 23 HOH HOH . K 6 HOH B 9 409 34 HOH HOH . K 6 HOH B 10 410 28 HOH HOH . K 6 HOH B 11 411 10 HOH HOH . K 6 HOH B 12 412 21 HOH HOH . K 6 HOH B 13 413 8 HOH HOH . K 6 HOH B 14 414 24 HOH HOH . K 6 HOH B 15 415 25 HOH HOH . K 6 HOH B 16 416 14 HOH HOH . K 6 HOH B 17 417 2 HOH HOH . K 6 HOH B 18 418 32 HOH HOH . K 6 HOH B 19 419 17 HOH HOH . K 6 HOH B 20 420 6 HOH HOH . K 6 HOH B 21 421 29 HOH HOH . K 6 HOH B 22 422 15 HOH HOH . K 6 HOH B 23 423 16 HOH HOH . K 6 HOH B 24 424 35 HOH HOH . K 6 HOH B 25 425 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 5 6.946 6.928 -12.39 1 48.96 ? C1 EDO 305 B 1 HETATM 2 O O1 EDO . . . I 5 6.1 7.823 -11.686 1 48.86 ? O1 EDO 305 B 1 HETATM 3 C C2 EDO . . . I 5 7.753 6.003 -11.539 1 47.6 ? C2 EDO 305 B 1 HETATM 4 O O2 EDO . . . I 5 8.401 4.983 -12.29 1 48.2 ? O2 EDO 305 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #