data_6KO6 # _model_server_result.job_id H7gTebi-4a162GS-7G9THA _model_server_result.datetime_utc '2024-11-24 14:29:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ko6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6KO6 # _exptl.entry_id 6KO6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KO6 _cell.length_a 89.02 _cell.length_b 95.8 _cell.length_c 93.33 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KO6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 174 B ASP 174 1_555 C MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc2 A OD2 ASP 174 B ASP 174 1_555 C MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc3 B O3G ANP . B ANP 401 1_555 C MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc4 B O2B ANP . B ANP 401 1_555 C MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6KO6 _atom_sites.fract_transf_matrix[1][1] 0.011233 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010438 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP B 1 401 1 ANP ANP . C 3 MG B 1 402 1 MG MG . D 4 SO4 B 1 403 1 SO4 SO4 . E 4 SO4 B 1 404 2 SO4 SO4 . F 5 HOH B 1 501 28 HOH HOH . F 5 HOH B 2 502 32 HOH HOH . F 5 HOH B 3 503 4 HOH HOH . F 5 HOH B 4 504 18 HOH HOH . F 5 HOH B 5 505 14 HOH HOH . F 5 HOH B 6 506 12 HOH HOH . F 5 HOH B 7 507 8 HOH HOH . F 5 HOH B 8 508 31 HOH HOH . F 5 HOH B 9 509 3 HOH HOH . F 5 HOH B 10 510 24 HOH HOH . F 5 HOH B 11 511 30 HOH HOH . F 5 HOH B 12 512 5 HOH HOH . F 5 HOH B 13 513 9 HOH HOH . F 5 HOH B 14 514 1 HOH HOH . F 5 HOH B 15 515 19 HOH HOH . F 5 HOH B 16 516 26 HOH HOH . F 5 HOH B 17 517 27 HOH HOH . F 5 HOH B 18 518 29 HOH HOH . F 5 HOH B 19 519 6 HOH HOH . F 5 HOH B 20 520 25 HOH HOH . F 5 HOH B 21 521 23 HOH HOH . F 5 HOH B 22 522 13 HOH HOH . F 5 HOH B 23 523 20 HOH HOH . F 5 HOH B 24 524 33 HOH HOH . F 5 HOH B 25 525 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 8.39 13.241 -18.113 1 76.69 ? PG ANP 401 B 1 HETATM 2 O O1G ANP . . . B 2 9.723 13.403 -17.474 1 66.57 ? O1G ANP 401 B 1 HETATM 3 O O2G ANP . . . B 2 7.412 14.159 -17.502 1 64.88 ? O2G ANP 401 B 1 HETATM 4 O O3G ANP . . . B 2 8.552 13.493 -19.554 1 67.74 ? O3G ANP 401 B 1 HETATM 5 P PB ANP . . . B 2 8.328 10.418 -18.707 1 75.6 ? PB ANP 401 B 1 HETATM 6 O O1B ANP . . . B 2 7.072 9.836 -19.259 1 72.37 ? O1B ANP 401 B 1 HETATM 7 O O2B ANP . . . B 2 9.42 10.73 -19.674 1 66.21 ? O2B ANP 401 B 1 HETATM 8 N N3B ANP . . . B 2 7.973 11.709 -17.823 1 76.84 ? N3B ANP 401 B 1 HETATM 9 P PA ANP . . . B 2 10.277 9.36 -16.837 1 72.99 ? PA ANP 401 B 1 HETATM 10 O O1A ANP . . . B 2 11.164 8.486 -17.632 1 61.22 ? O1A ANP 401 B 1 HETATM 11 O O2A ANP . . . B 2 10.719 10.741 -16.561 1 75.7 ? O2A ANP 401 B 1 HETATM 12 O O3A ANP . . . B 2 8.87 9.466 -17.564 1 71.78 ? O3A ANP 401 B 1 HETATM 13 O O5' ANP . . . B 2 9.93 8.638 -15.47 1 64.79 ? O5' ANP 401 B 1 HETATM 14 C C5' ANP . . . B 2 8.826 9.051 -14.662 1 64.81 ? C5' ANP 401 B 1 HETATM 15 C C4' ANP . . . B 2 9.141 8.678 -13.24 1 64.9 ? C4' ANP 401 B 1 HETATM 16 O O4' ANP . . . B 2 9.49 7.28 -13.186 1 70.12 ? O4' ANP 401 B 1 HETATM 17 C C3' ANP . . . B 2 10.365 9.371 -12.647 1 69.3 ? C3' ANP 401 B 1 HETATM 18 O O3' ANP . . . B 2 10.044 10.679 -12.196 1 69.85 ? O3' ANP 401 B 1 HETATM 19 C C2' ANP . . . B 2 10.819 8.386 -11.566 1 68.12 ? C2' ANP 401 B 1 HETATM 20 O O2' ANP . . . B 2 10.242 8.662 -10.313 1 72.85 ? O2' ANP 401 B 1 HETATM 21 C C1' ANP . . . B 2 10.369 7.033 -12.117 1 68.45 ? C1' ANP 401 B 1 HETATM 22 N N9 ANP . . . B 2 11.515 6.329 -12.646 1 61.67 ? N9 ANP 401 B 1 HETATM 23 C C8 ANP . . . B 2 11.985 6.353 -13.915 1 57.63 ? C8 ANP 401 B 1 HETATM 24 N N7 ANP . . . B 2 13.082 5.658 -14.073 1 55.46 ? N7 ANP 401 B 1 HETATM 25 C C5 ANP . . . B 2 13.362 5.181 -12.805 1 55.93 ? C5 ANP 401 B 1 HETATM 26 C C6 ANP . . . B 2 14.4 4.391 -12.292 1 55.06 ? C6 ANP 401 B 1 HETATM 27 N N6 ANP . . . B 2 15.409 3.935 -13.018 1 54.72 ? N6 ANP 401 B 1 HETATM 28 N N1 ANP . . . B 2 14.377 4.121 -10.972 1 56.79 ? N1 ANP 401 B 1 HETATM 29 C C2 ANP . . . B 2 13.366 4.591 -10.24 1 59.7 ? C2 ANP 401 B 1 HETATM 30 N N3 ANP . . . B 2 12.33 5.329 -10.614 1 55.27 ? N3 ANP 401 B 1 HETATM 31 C C4 ANP . . . B 2 12.397 5.593 -11.92 1 56.62 ? C4 ANP 401 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #