data_6KOB
#
_model_server_result.job_id            8iaQbJg5-4MCiqIqvykmaw 
_model_server_result.datetime_utc      '2025-01-11 20:06:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kob 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1001}' 
#
_entry.id    6KOB 
#
_exptl.entry_id    6KOB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              852.837 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEME-A 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.47 
_cell.angle_gamma         90 
_cell.entry_id            6KOB 
_cell.length_a            110.889 
_cell.length_b            158.07 
_cell.length_c            147.009 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KOB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L 1 1 
E,F,G,H,M,N,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 M N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 102 A HIS 102 1_555 I FE HEA . A HEA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc2 A ND1 HIS 280 A HIS 280 1_555 K CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc3 A NE2 HIS 329 A HIS 329 1_555 K CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc4 A NE2 HIS 330 A HIS 330 1_555 K CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc5 A NE2 HIS 417 A HIS 417 1_555 I FE HEA . A HEA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? 
metalc ? metalc6 H NE2 HIS 102 E HIS 102 1_555 M FE HEA . E HEA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc7 H ND1 HIS 280 E HIS 280 1_555 O CU CU . E CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc8 H NE2 HIS 329 E HIS 329 1_555 O CU CU . E CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc9 H NE2 HIS 330 E HIS 330 1_555 O CU CU . E CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc10 H NE2 HIS 417 E HIS 417 1_555 M FE HEA . E HEA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
#
_chem_comp.formula           'C49 H56 Fe N4 O6' 
_chem_comp.formula_weight    852.837 
_chem_comp.id                HEA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEME-A 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEA sing 129 n n 
FE NB HEA sing 130 n n 
FE NC HEA sing 131 n n 
FE ND HEA sing 132 n n 
CHA C1A HEA doub 133 n n 
CHA C4D HEA sing 134 n n 
CHA HHA HEA sing 135 n n 
CHB C4A HEA doub 136 n n 
CHB C1B HEA sing 137 n n 
CHB HHB HEA sing 138 n n 
CHC C4B HEA doub 139 n n 
CHC C1C HEA sing 140 n n 
CHC HHC HEA sing 141 n n 
CHD C4C HEA sing 142 n n 
CHD C1D HEA doub 143 n n 
CHD HHD HEA sing 144 n n 
NA C1A HEA sing 145 n y 
NA C4A HEA sing 146 n y 
C1A C2A HEA sing 147 n y 
C2A C3A HEA doub 148 n y 
C2A CAA HEA sing 149 n n 
C3A C4A HEA sing 150 n y 
C3A CMA HEA sing 151 n n 
CMA OMA HEA doub 152 n n 
CMA HMA HEA sing 153 n n 
CAA CBA HEA sing 154 n n 
CAA HAA1 HEA sing 155 n n 
CAA HAA2 HEA sing 156 n n 
CBA CGA HEA sing 157 n n 
CBA HBA1 HEA sing 158 n n 
CBA HBA2 HEA sing 159 n n 
CGA O1A HEA doub 160 n n 
CGA O2A HEA sing 161 n n 
O2A H2A HEA sing 162 n n 
NB C1B HEA doub 163 n n 
NB C4B HEA sing 164 n n 
C1B C2B HEA sing 165 n n 
C2B C3B HEA doub 166 n n 
C2B CMB HEA sing 167 n n 
C3B C4B HEA sing 168 n n 
C3B C11 HEA sing 169 n n 
CMB HMB1 HEA sing 170 n n 
CMB HMB2 HEA sing 171 n n 
CMB HMB3 HEA sing 172 n n 
NC C1C HEA sing 173 n y 
NC C4C HEA sing 174 n y 
C1C C2C HEA doub 175 n y 
C2C C3C HEA sing 176 n y 
C2C CMC HEA sing 177 n n 
C3C C4C HEA doub 178 n y 
C3C CAC HEA sing 179 n n 
CMC HMC1 HEA sing 180 n n 
CMC HMC2 HEA sing 181 n n 
CMC HMC3 HEA sing 182 n n 
CAC CBC HEA doub 183 n n 
CAC HAC HEA sing 184 n n 
CBC HBC1 HEA sing 185 n n 
CBC HBC2 HEA sing 186 n n 
ND C1D HEA sing 187 n n 
ND C4D HEA doub 188 n n 
C1D C2D HEA sing 189 n n 
C2D C3D HEA doub 190 n n 
C2D CMD HEA sing 191 n n 
C3D C4D HEA sing 192 n n 
C3D CAD HEA sing 193 n n 
CMD HMD1 HEA sing 194 n n 
CMD HMD2 HEA sing 195 n n 
CMD HMD3 HEA sing 196 n n 
CAD CBD HEA sing 197 n n 
CAD HAD1 HEA sing 198 n n 
CAD HAD2 HEA sing 199 n n 
CBD CGD HEA sing 200 n n 
CBD HBD1 HEA sing 201 n n 
CBD HBD2 HEA sing 202 n n 
CGD O1D HEA doub 203 n n 
CGD O2D HEA sing 204 n n 
O2D H2D HEA sing 205 n n 
C11 O11 HEA sing 206 n n 
C11 C12 HEA sing 207 n n 
C11 H11 HEA sing 208 n n 
O11 HO1 HEA sing 209 n n 
C12 C13 HEA sing 210 n n 
C12 H121 HEA sing 211 n n 
C12 H122 HEA sing 212 n n 
C13 C14 HEA sing 213 n n 
C13 H131 HEA sing 214 n n 
C13 H132 HEA sing 215 n n 
C14 C15 HEA doub 216 e n 
C14 H14 HEA sing 217 n n 
C15 C16 HEA sing 218 n n 
C15 C26 HEA sing 219 n n 
C16 C17 HEA sing 220 n n 
C16 H161 HEA sing 221 n n 
C16 H162 HEA sing 222 n n 
C17 C18 HEA sing 223 n n 
C17 H171 HEA sing 224 n n 
C17 H172 HEA sing 225 n n 
C18 C19 HEA doub 226 e n 
C18 H18 HEA sing 227 n n 
C19 C20 HEA sing 228 n n 
C19 C27 HEA sing 229 n n 
C20 C21 HEA sing 230 n n 
C20 H201 HEA sing 231 n n 
C20 H202 HEA sing 232 n n 
C21 C22 HEA sing 233 n n 
C21 H211 HEA sing 234 n n 
C21 H212 HEA sing 235 n n 
C22 C23 HEA doub 236 n n 
C22 H22 HEA sing 237 n n 
C23 C24 HEA sing 238 n n 
C23 C25 HEA sing 239 n n 
C24 H241 HEA sing 240 n n 
C24 H242 HEA sing 241 n n 
C24 H243 HEA sing 242 n n 
C25 H251 HEA sing 243 n n 
C25 H252 HEA sing 244 n n 
C25 H253 HEA sing 245 n n 
C26 H261 HEA sing 246 n n 
C26 H262 HEA sing 247 n n 
C26 H263 HEA sing 248 n n 
C27 H271 HEA sing 249 n n 
C27 H272 HEA sing 250 n n 
C27 H273 HEA sing 251 n n 
#
_atom_sites.entry_id                     6KOB 
_atom_sites.fract_transf_matrix[1][1]    0.009018 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002838 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006326 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007131 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 HEA A 1 1001 1001 HEA HEA . 
J 5 HEA A 1 1002 1002 HEA HEA . 
K 6 CU A 1 1003 1105 CU CU . 
L 7 MQ7 A 1 1004 1201 MQ7 MQ7 . 
M 5 HEA E 1 1001 1001 HEA HEA . 
N 5 HEA E 1 1002 1002 HEA HEA . 
O 6 CU E 1 1003 1105 CU CU . 
P 7 MQ7 E 1 1004 1201 MQ7 MQ7 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEA . . . M 5 55.142 62.875 -8.658 1 107.05 ? FE HEA 1001 E 1 
HETATM 2 C CHA HEA . . . M 5 56.231 65.201 -6.48 1 127.68 ? CHA HEA 1001 E 1 
HETATM 3 C CHB HEA . . . M 5 53.47 61.007 -6.326 1 116.38 ? CHB HEA 1001 E 1 
HETATM 4 C CHC HEA . . . M 5 55.08 60.242 -10.867 1 111.33 ? CHC HEA 1001 E 1 
HETATM 5 C CHD HEA . . . M 5 55.514 65.108 -11.274 1 102.75 ? CHD HEA 1001 E 1 
HETATM 6 N NA HEA . . . M 5 55.113 62.944 -6.687 1 143.51 ? NA HEA 1001 E 1 
HETATM 7 C C1A HEA . . . M 5 55.147 64.286 -6.102 1 141.67 ? C1A HEA 1001 E 1 
HETATM 8 C C2A HEA . . . M 5 54.068 64.57 -5.109 1 140.12 ? C2A HEA 1001 E 1 
HETATM 9 C C3A HEA . . . M 5 53.28 63.315 -5.096 1 140.91 ? C3A HEA 1001 E 1 
HETATM 10 C C4A HEA . . . M 5 53.92 62.38 -6.054 1 140.36 ? C4A HEA 1001 E 1 
HETATM 11 C CMA HEA . . . M 5 52.068 63.045 -4.277 1 182.42 ? CMA HEA 1001 E 1 
HETATM 12 O OMA HEA . . . M 5 51.836 61.924 -3.838 1 214.55 ? OMA HEA 1001 E 1 
HETATM 13 C CAA HEA . . . M 5 53.823 65.839 -4.325 1 139.31 ? CAA HEA 1001 E 1 
HETATM 14 C CBA HEA . . . M 5 54.939 66.066 -3.312 1 130.2 ? CBA HEA 1001 E 1 
HETATM 15 C CGA HEA . . . M 5 54.393 66.775 -2.096 1 117.57 ? CGA HEA 1001 E 1 
HETATM 16 O O1A HEA . . . M 5 54.776 66.407 -0.966 1 106.68 ? O1A HEA 1001 E 1 
HETATM 17 O O2A HEA . . . M 5 53.575 67.704 -2.266 1 117.53 ? O2A HEA 1001 E 1 
HETATM 18 N NB HEA . . . M 5 54.39 60.912 -8.599 1 76.96 ? NB HEA 1001 E 1 
HETATM 19 C C1B HEA . . . M 5 53.736 60.306 -7.591 1 93.09 ? C1B HEA 1001 E 1 
HETATM 20 C C2B HEA . . . M 5 53.321 58.908 -7.853 1 86.22 ? C2B HEA 1001 E 1 
HETATM 21 C C3B HEA . . . M 5 53.803 58.672 -9.221 1 97.02 ? C3B HEA 1001 E 1 
HETATM 22 C C4B HEA . . . M 5 54.438 59.973 -9.568 1 95.07 ? C4B HEA 1001 E 1 
HETATM 23 C CMB HEA . . . M 5 52.589 57.958 -6.95 1 85.8 ? CMB HEA 1001 E 1 
HETATM 24 N NC HEA . . . M 5 55.27 62.703 -10.749 1 114.81 ? NC HEA 1001 E 1 
HETATM 25 C C1C HEA . . . M 5 55.22 61.571 -11.492 1 120.43 ? C1C HEA 1001 E 1 
HETATM 26 C C2C HEA . . . M 5 55.342 61.751 -12.965 1 119.48 ? C2C HEA 1001 E 1 
HETATM 27 C C3C HEA . . . M 5 55.471 63.215 -13.056 1 109 ? C3C HEA 1001 E 1 
HETATM 28 C C4C HEA . . . M 5 55.405 63.691 -11.655 1 110.33 ? C4C HEA 1001 E 1 
HETATM 29 C CMC HEA . . . M 5 55.323 60.695 -14.041 1 116.14 ? CMC HEA 1001 E 1 
HETATM 30 C CAC HEA . . . M 5 55.617 64.076 -14.262 1 99.14 ? CAC HEA 1001 E 1 
HETATM 31 C CBC HEA . . . M 5 56.18 63.652 -15.379 1 73.75 ? CBC HEA 1001 E 1 
HETATM 32 N ND HEA . . . M 5 55.787 64.875 -8.831 1 84.68 ? ND HEA 1001 E 1 
HETATM 33 C C1D HEA . . . M 5 55.888 65.627 -9.946 1 86.35 ? C1D HEA 1001 E 1 
HETATM 34 C C2D HEA . . . M 5 56.374 67.017 -9.735 1 89.76 ? C2D HEA 1001 E 1 
HETATM 35 C C3D HEA . . . M 5 56.6 67.067 -8.28 1 90.84 ? C3D HEA 1001 E 1 
HETATM 36 C C4D HEA . . . M 5 56.213 65.698 -7.857 1 98.44 ? C4D HEA 1001 E 1 
HETATM 37 C CMD HEA . . . M 5 56.597 68.1 -10.758 1 66.08 ? CMD HEA 1001 E 1 
HETATM 38 C CAD HEA . . . M 5 57.107 68.213 -7.438 1 80.62 ? CAD HEA 1001 E 1 
HETATM 39 C CBD HEA . . . M 5 58.564 68.487 -7.782 1 91.12 ? CBD HEA 1001 E 1 
HETATM 40 C CGD HEA . . . M 5 59.228 69.23 -6.65 1 99.86 ? CGD HEA 1001 E 1 
HETATM 41 O O1D HEA . . . M 5 58.817 70.374 -6.362 1 99.89 ? O1D HEA 1001 E 1 
HETATM 42 O O2D HEA . . . M 5 60.166 68.668 -6.046 1 119.5 ? O2D HEA 1001 E 1 
HETATM 43 C C11 HEA . . . M 5 53.671 57.428 -10.016 1 126 ? C11 HEA 1001 E 1 
HETATM 44 O O11 HEA . . . M 5 53.545 57.724 -11.412 1 157.85 ? O11 HEA 1001 E 1 
HETATM 45 C C12 HEA . . . M 5 54.887 56.541 -9.772 1 109.55 ? C12 HEA 1001 E 1 
HETATM 46 C C13 HEA . . . M 5 55.424 55.969 -11.077 1 114.18 ? C13 HEA 1001 E 1 
HETATM 47 C C14 HEA . . . M 5 56.291 54.776 -10.759 1 103.53 ? C14 HEA 1001 E 1 
HETATM 48 C C15 HEA . . . M 5 56.635 53.887 -11.701 1 100.67 ? C15 HEA 1001 E 1 
HETATM 49 C C16 HEA . . . M 5 57.502 52.711 -11.323 1 94.03 ? C16 HEA 1001 E 1 
HETATM 50 C C17 HEA . . . M 5 56.955 52.082 -10.047 1 108.06 ? C17 HEA 1001 E 1 
HETATM 51 C C18 HEA . . . M 5 58.093 51.694 -9.134 1 123.48 ? C18 HEA 1001 E 1 
HETATM 52 C C19 HEA . . . M 5 58.235 50.429 -8.712 1 133.34 ? C19 HEA 1001 E 1 
HETATM 53 C C20 HEA . . . M 5 59.38 50.067 -7.798 1 145.94 ? C20 HEA 1001 E 1 
HETATM 54 C C21 HEA . . . M 5 58.875 49.191 -6.657 1 163.75 ? C21 HEA 1001 E 1 
HETATM 55 C C22 HEA . . . M 5 60.029 48.399 -6.092 1 182.86 ? C22 HEA 1001 E 1 
HETATM 56 C C23 HEA . . . M 5 60.474 48.62 -4.846 1 189.5 ? C23 HEA 1001 E 1 
HETATM 57 C C24 HEA . . . M 5 61.624 47.819 -4.311 1 201.81 ? C24 HEA 1001 E 1 
HETATM 58 C C25 HEA . . . M 5 59.828 49.666 -3.986 1 186.37 ? C25 HEA 1001 E 1 
HETATM 59 C C26 HEA . . . M 5 56.166 54.056 -13.116 1 136.58 ? C26 HEA 1001 E 1 
HETATM 60 C C27 HEA . . . M 5 57.264 49.372 -9.146 1 135.45 ? C27 HEA 1001 E 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    68 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           60 
#