data_6KOB
#
_model_server_result.job_id            9jW4lbNxbQefaUz48ByHnA 
_model_server_result.datetime_utc      '2024-10-19 16:23:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kob 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1002}' 
#
_entry.id    6KOB 
#
_exptl.entry_id    6KOB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              852.837 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEME-A 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.47 
_cell.angle_gamma         90 
_cell.entry_id            6KOB 
_cell.length_a            110.889 
_cell.length_b            158.07 
_cell.length_c            147.009 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KOB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L 1 1 
E,F,G,H,M,N,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 M N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 102 A HIS 102 1_555 I FE HEA . A HEA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc2 A ND1 HIS 280 A HIS 280 1_555 K CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc3 A NE2 HIS 329 A HIS 329 1_555 K CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc4 A NE2 HIS 330 A HIS 330 1_555 K CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc5 A NE2 HIS 417 A HIS 417 1_555 I FE HEA . A HEA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? 
metalc ? metalc6 H NE2 HIS 102 E HIS 102 1_555 M FE HEA . E HEA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc7 H ND1 HIS 280 E HIS 280 1_555 O CU CU . E CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc8 H NE2 HIS 329 E HIS 329 1_555 O CU CU . E CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc9 H NE2 HIS 330 E HIS 330 1_555 O CU CU . E CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc10 H NE2 HIS 417 E HIS 417 1_555 M FE HEA . E HEA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
#
_chem_comp.formula           'C49 H56 Fe N4 O6' 
_chem_comp.formula_weight    852.837 
_chem_comp.id                HEA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEME-A 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEA sing 129 n n 
FE NB HEA sing 130 n n 
FE NC HEA sing 131 n n 
FE ND HEA sing 132 n n 
CHA C1A HEA doub 133 n n 
CHA C4D HEA sing 134 n n 
CHA HHA HEA sing 135 n n 
CHB C4A HEA doub 136 n n 
CHB C1B HEA sing 137 n n 
CHB HHB HEA sing 138 n n 
CHC C4B HEA doub 139 n n 
CHC C1C HEA sing 140 n n 
CHC HHC HEA sing 141 n n 
CHD C4C HEA sing 142 n n 
CHD C1D HEA doub 143 n n 
CHD HHD HEA sing 144 n n 
NA C1A HEA sing 145 n y 
NA C4A HEA sing 146 n y 
C1A C2A HEA sing 147 n y 
C2A C3A HEA doub 148 n y 
C2A CAA HEA sing 149 n n 
C3A C4A HEA sing 150 n y 
C3A CMA HEA sing 151 n n 
CMA OMA HEA doub 152 n n 
CMA HMA HEA sing 153 n n 
CAA CBA HEA sing 154 n n 
CAA HAA1 HEA sing 155 n n 
CAA HAA2 HEA sing 156 n n 
CBA CGA HEA sing 157 n n 
CBA HBA1 HEA sing 158 n n 
CBA HBA2 HEA sing 159 n n 
CGA O1A HEA doub 160 n n 
CGA O2A HEA sing 161 n n 
O2A H2A HEA sing 162 n n 
NB C1B HEA doub 163 n n 
NB C4B HEA sing 164 n n 
C1B C2B HEA sing 165 n n 
C2B C3B HEA doub 166 n n 
C2B CMB HEA sing 167 n n 
C3B C4B HEA sing 168 n n 
C3B C11 HEA sing 169 n n 
CMB HMB1 HEA sing 170 n n 
CMB HMB2 HEA sing 171 n n 
CMB HMB3 HEA sing 172 n n 
NC C1C HEA sing 173 n y 
NC C4C HEA sing 174 n y 
C1C C2C HEA doub 175 n y 
C2C C3C HEA sing 176 n y 
C2C CMC HEA sing 177 n n 
C3C C4C HEA doub 178 n y 
C3C CAC HEA sing 179 n n 
CMC HMC1 HEA sing 180 n n 
CMC HMC2 HEA sing 181 n n 
CMC HMC3 HEA sing 182 n n 
CAC CBC HEA doub 183 n n 
CAC HAC HEA sing 184 n n 
CBC HBC1 HEA sing 185 n n 
CBC HBC2 HEA sing 186 n n 
ND C1D HEA sing 187 n n 
ND C4D HEA doub 188 n n 
C1D C2D HEA sing 189 n n 
C2D C3D HEA doub 190 n n 
C2D CMD HEA sing 191 n n 
C3D C4D HEA sing 192 n n 
C3D CAD HEA sing 193 n n 
CMD HMD1 HEA sing 194 n n 
CMD HMD2 HEA sing 195 n n 
CMD HMD3 HEA sing 196 n n 
CAD CBD HEA sing 197 n n 
CAD HAD1 HEA sing 198 n n 
CAD HAD2 HEA sing 199 n n 
CBD CGD HEA sing 200 n n 
CBD HBD1 HEA sing 201 n n 
CBD HBD2 HEA sing 202 n n 
CGD O1D HEA doub 203 n n 
CGD O2D HEA sing 204 n n 
O2D H2D HEA sing 205 n n 
C11 O11 HEA sing 206 n n 
C11 C12 HEA sing 207 n n 
C11 H11 HEA sing 208 n n 
O11 HO1 HEA sing 209 n n 
C12 C13 HEA sing 210 n n 
C12 H121 HEA sing 211 n n 
C12 H122 HEA sing 212 n n 
C13 C14 HEA sing 213 n n 
C13 H131 HEA sing 214 n n 
C13 H132 HEA sing 215 n n 
C14 C15 HEA doub 216 e n 
C14 H14 HEA sing 217 n n 
C15 C16 HEA sing 218 n n 
C15 C26 HEA sing 219 n n 
C16 C17 HEA sing 220 n n 
C16 H161 HEA sing 221 n n 
C16 H162 HEA sing 222 n n 
C17 C18 HEA sing 223 n n 
C17 H171 HEA sing 224 n n 
C17 H172 HEA sing 225 n n 
C18 C19 HEA doub 226 e n 
C18 H18 HEA sing 227 n n 
C19 C20 HEA sing 228 n n 
C19 C27 HEA sing 229 n n 
C20 C21 HEA sing 230 n n 
C20 H201 HEA sing 231 n n 
C20 H202 HEA sing 232 n n 
C21 C22 HEA sing 233 n n 
C21 H211 HEA sing 234 n n 
C21 H212 HEA sing 235 n n 
C22 C23 HEA doub 236 n n 
C22 H22 HEA sing 237 n n 
C23 C24 HEA sing 238 n n 
C23 C25 HEA sing 239 n n 
C24 H241 HEA sing 240 n n 
C24 H242 HEA sing 241 n n 
C24 H243 HEA sing 242 n n 
C25 H251 HEA sing 243 n n 
C25 H252 HEA sing 244 n n 
C25 H253 HEA sing 245 n n 
C26 H261 HEA sing 246 n n 
C26 H262 HEA sing 247 n n 
C26 H263 HEA sing 248 n n 
C27 H271 HEA sing 249 n n 
C27 H272 HEA sing 250 n n 
C27 H273 HEA sing 251 n n 
#
_atom_sites.entry_id                     6KOB 
_atom_sites.fract_transf_matrix[1][1]    0.009018 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002838 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006326 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007131 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 HEA A 1 1001 1001 HEA HEA . 
J 5 HEA A 1 1002 1002 HEA HEA . 
K 6 CU A 1 1003 1105 CU CU . 
L 7 MQ7 A 1 1004 1201 MQ7 MQ7 . 
M 5 HEA E 1 1001 1001 HEA HEA . 
N 5 HEA E 1 1002 1002 HEA HEA . 
O 6 CU E 1 1003 1105 CU CU . 
P 7 MQ7 E 1 1004 1201 MQ7 MQ7 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEA . . . N 5 49.229 74.067 -15.352 1 136.73 ? FE HEA 1002 E 1 
HETATM 2 C CHA HEA . . . N 5 50.357 74.48 -12.146 1 163.21 ? CHA HEA 1002 E 1 
HETATM 3 C CHB HEA . . . N 5 46.744 76.453 -15.022 1 150.4 ? CHB HEA 1002 E 1 
HETATM 4 C CHC HEA . . . N 5 48.067 73.403 -18.578 1 160.08 ? CHC HEA 1002 E 1 
HETATM 5 C CHD HEA . . . N 5 51.972 71.964 -15.972 1 156.07 ? CHD HEA 1002 E 1 
HETATM 6 N NA HEA . . . N 5 48.498 75.049 -13.79 1 144.65 ? NA HEA 1002 E 1 
HETATM 7 C C1A HEA . . . N 5 49.45 75.454 -12.748 1 153.31 ? C1A HEA 1002 E 1 
HETATM 8 C C2A HEA . . . N 5 49.359 76.872 -12.305 1 144.1 ? C2A HEA 1002 E 1 
HETATM 9 C C3A HEA . . . N 5 48.291 77.423 -13.161 1 147.75 ? C3A HEA 1002 E 1 
HETATM 10 C C4A HEA . . . N 5 47.826 76.326 -14.045 1 147.28 ? C4A HEA 1002 E 1 
HETATM 11 C CMA HEA . . . N 5 47.802 78.825 -13.147 1 137.94 ? CMA HEA 1002 E 1 
HETATM 12 O OMA HEA . . . N 5 47.235 79.303 -14.115 1 132.47 ? OMA HEA 1002 E 1 
HETATM 13 C CAA HEA . . . N 5 50.174 77.573 -11.245 1 133.89 ? CAA HEA 1002 E 1 
HETATM 14 C CBA HEA . . . N 5 49.538 77.297 -9.887 1 136.56 ? CBA HEA 1002 E 1 
HETATM 15 C CGA HEA . . . N 5 50.317 77.995 -8.798 1 148.59 ? CGA HEA 1002 E 1 
HETATM 16 O O1A HEA . . . N 5 50.307 79.244 -8.763 1 148.9 ? O1A HEA 1002 E 1 
HETATM 17 O O2A HEA . . . N 5 50.943 77.295 -7.973 1 157.16 ? O2A HEA 1002 E 1 
HETATM 18 N NB HEA . . . N 5 47.67 74.804 -16.578 1 151.04 ? NB HEA 1002 E 1 
HETATM 19 C C1B HEA . . . N 5 46.761 75.765 -16.311 1 149.75 ? C1B HEA 1002 E 1 
HETATM 20 C C2B HEA . . . N 5 45.783 76.074 -17.382 1 130.57 ? C2B HEA 1002 E 1 
HETATM 21 C C3B HEA . . . N 5 46.188 75.152 -18.449 1 130.12 ? C3B HEA 1002 E 1 
HETATM 22 C C4B HEA . . . N 5 47.342 74.441 -17.838 1 148.75 ? C4B HEA 1002 E 1 
HETATM 23 C CMB HEA . . . N 5 44.662 77.079 -17.377 1 118.54 ? CMB HEA 1002 E 1 
HETATM 24 N NC HEA . . . N 5 49.899 72.902 -16.979 1 150.65 ? NC HEA 1002 E 1 
HETATM 25 C C1C HEA . . . N 5 49.321 72.746 -18.196 1 153.63 ? C1C HEA 1002 E 1 
HETATM 26 C C2C HEA . . . N 5 50.011 71.854 -19.162 1 152.23 ? C2C HEA 1002 E 1 
HETATM 27 C C3C HEA . . . N 5 51.166 71.434 -18.361 1 141.05 ? C3C HEA 1002 E 1 
HETATM 28 C C4C HEA . . . N 5 51.008 72.134 -17.067 1 152.86 ? C4C HEA 1002 E 1 
HETATM 29 C CMC HEA . . . N 5 49.596 71.506 -20.568 1 153.86 ? CMC HEA 1002 E 1 
HETATM 30 C CAC HEA . . . N 5 52.283 70.533 -18.739 1 128.77 ? CAC HEA 1002 E 1 
HETATM 31 C CBC HEA . . . N 5 52.116 69.56 -19.614 1 128.57 ? CBC HEA 1002 E 1 
HETATM 32 N ND HEA . . . N 5 50.88 73.353 -14.234 1 148.54 ? ND HEA 1002 E 1 
HETATM 33 C C1D HEA . . . N 5 51.883 72.532 -14.622 1 149.98 ? C1D HEA 1002 E 1 
HETATM 34 C C2D HEA . . . N 5 52.912 72.218 -13.593 1 143.99 ? C2D HEA 1002 E 1 
HETATM 35 C C3D HEA . . . N 5 52.438 72.971 -12.424 1 150.12 ? C3D HEA 1002 E 1 
HETATM 36 C C4D HEA . . . N 5 51.204 73.609 -12.952 1 159.05 ? C4D HEA 1002 E 1 
HETATM 37 C CMD HEA . . . N 5 54.133 71.345 -13.721 1 131.96 ? CMD HEA 1002 E 1 
HETATM 38 C CAD HEA . . . N 5 53.044 73.065 -11.042 1 148.42 ? CAD HEA 1002 E 1 
HETATM 39 C CBD HEA . . . N 5 54.429 73.699 -11.098 1 141.45 ? CBD HEA 1002 E 1 
HETATM 40 C CGD HEA . . . N 5 55.03 73.733 -9.712 1 138.47 ? CGD HEA 1002 E 1 
HETATM 41 O O1D HEA . . . N 5 54.67 74.638 -8.928 1 140.15 ? O1D HEA 1002 E 1 
HETATM 42 O O2D HEA . . . N 5 55.865 72.856 -9.399 1 134.67 ? O2D HEA 1002 E 1 
HETATM 43 C C11 HEA . . . N 5 45.59 74.983 -19.793 1 109.98 ? C11 HEA 1002 E 1 
HETATM 44 O O11 HEA . . . N 5 46.618 74.903 -20.788 1 97.79 ? O11 HEA 1002 E 1 
HETATM 45 C C12 HEA . . . N 5 44.737 73.722 -19.819 1 108.29 ? C12 HEA 1002 E 1 
HETATM 46 C C13 HEA . . . N 5 43.834 73.714 -21.046 1 113.38 ? C13 HEA 1002 E 1 
HETATM 47 C C14 HEA . . . N 5 42.762 72.67 -20.854 1 113.17 ? C14 HEA 1002 E 1 
HETATM 48 C C15 HEA . . . N 5 41.493 73.044 -20.64 1 129.16 ? C15 HEA 1002 E 1 
HETATM 49 C C16 HEA . . . N 5 40.429 71.99 -20.443 1 121.79 ? C16 HEA 1002 E 1 
HETATM 50 C C17 HEA . . . N 5 40.051 71.38 -21.787 1 135.35 ? C17 HEA 1002 E 1 
HETATM 51 C C18 HEA . . . N 5 39.181 72.352 -22.546 1 133.94 ? C18 HEA 1002 E 1 
HETATM 52 C C19 HEA . . . N 5 37.919 72.044 -22.873 1 116.85 ? C19 HEA 1002 E 1 
HETATM 53 C C20 HEA . . . N 5 37.075 73.042 -23.631 1 107.29 ? C20 HEA 1002 E 1 
HETATM 54 C C21 HEA . . . N 5 35.954 73.553 -22.733 1 105.85 ? C21 HEA 1002 E 1 
HETATM 55 C C22 HEA . . . N 5 36.546 74.178 -21.492 1 104.79 ? C22 HEA 1002 E 1 
HETATM 56 C C23 HEA . . . N 5 36.48 75.501 -21.286 1 134.59 ? C23 HEA 1002 E 1 
HETATM 57 C C24 HEA . . . N 5 37.08 76.094 -20.045 1 153.69 ? C24 HEA 1002 E 1 
HETATM 58 C C25 HEA . . . N 5 35.811 76.391 -22.293 1 138.35 ? C25 HEA 1002 E 1 
HETATM 59 C C26 HEA . . . N 5 41.136 74.502 -20.587 1 156.86 ? C26 HEA 1002 E 1 
HETATM 60 C C27 HEA . . . N 5 37.345 70.712 -22.491 1 104.61 ? C27 HEA 1002 E 1 
#
_model_server_stats.io_time_ms              187 
_model_server_stats.parse_time_ms           156 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           60 
#