data_6KOB # _model_server_result.job_id zrWbXCmxzfiEalVSgBp-0w _model_server_result.datetime_utc '2024-10-19 16:35:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kob # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1004}' # _entry.id 6KOB # _exptl.entry_id 6KOB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 648.999 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description MENAQUINONE-7 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.47 _cell.angle_gamma 90 _cell.entry_id 6KOB _cell.length_a 110.889 _cell.length_b 158.07 _cell.length_c 147.009 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KOB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L 1 1 E,F,G,H,M,N,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 L N N ? 7 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 102 A HIS 102 1_555 I FE HEA . A HEA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc2 A ND1 HIS 280 A HIS 280 1_555 K CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc3 A NE2 HIS 329 A HIS 329 1_555 K CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc4 A NE2 HIS 330 A HIS 330 1_555 K CU CU . A CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 A NE2 HIS 417 A HIS 417 1_555 I FE HEA . A HEA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc6 H NE2 HIS 102 E HIS 102 1_555 M FE HEA . E HEA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc7 H ND1 HIS 280 E HIS 280 1_555 O CU CU . E CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc8 H NE2 HIS 329 E HIS 329 1_555 O CU CU . E CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc9 H NE2 HIS 330 E HIS 330 1_555 O CU CU . E CU 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc10 H NE2 HIS 417 E HIS 417 1_555 M FE HEA . E HEA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? # _chem_comp.formula 'C46 H64 O2' _chem_comp.formula_weight 648.999 _chem_comp.id MQ7 _chem_comp.mon_nstd_flag . _chem_comp.name MENAQUINONE-7 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MQ7 doub 358 n n C1 C2 MQ7 sing 359 n n C1 C10 MQ7 sing 360 n n C2 C2M MQ7 sing 361 n n C2 C3 MQ7 doub 362 n n C2M H2M1 MQ7 sing 363 n n C2M H2M2 MQ7 sing 364 n n C2M H2M3 MQ7 sing 365 n n C3 C4 MQ7 sing 366 n n C3 C11 MQ7 sing 367 n n C4 O4 MQ7 doub 368 n n C4 C5 MQ7 sing 369 n n C5 C6 MQ7 doub 370 n y C5 C10 MQ7 sing 371 n y C6 C7 MQ7 sing 372 n y C6 H6 MQ7 sing 373 n n C7 C8 MQ7 doub 374 n y C7 H7 MQ7 sing 375 n n C8 C9 MQ7 sing 376 n y C8 H8 MQ7 sing 377 n n C9 C10 MQ7 doub 378 n y C9 H9 MQ7 sing 379 n n C11 C12 MQ7 sing 380 n n C11 H111 MQ7 sing 381 n n C11 H112 MQ7 sing 382 n n C12 C13 MQ7 doub 383 e n C12 H12 MQ7 sing 384 n n C13 C14 MQ7 sing 385 n n C13 C15 MQ7 sing 386 n n C14 H141 MQ7 sing 387 n n C14 H142 MQ7 sing 388 n n C14 H143 MQ7 sing 389 n n C15 C16 MQ7 sing 390 n n C15 H151 MQ7 sing 391 n n C15 H152 MQ7 sing 392 n n C16 C17 MQ7 sing 393 n n C16 H161 MQ7 sing 394 n n C16 H162 MQ7 sing 395 n n C17 C18 MQ7 doub 396 e n C17 H17 MQ7 sing 397 n n C18 C19 MQ7 sing 398 n n C18 C20 MQ7 sing 399 n n C19 H191 MQ7 sing 400 n n C19 H192 MQ7 sing 401 n n C19 H193 MQ7 sing 402 n n C20 C21 MQ7 sing 403 n n C20 H201 MQ7 sing 404 n n C20 H202 MQ7 sing 405 n n C21 C22 MQ7 sing 406 n n C21 H211 MQ7 sing 407 n n C21 H212 MQ7 sing 408 n n C22 C23 MQ7 doub 409 e n C22 H22 MQ7 sing 410 n n C23 C24 MQ7 sing 411 n n C23 C25 MQ7 sing 412 n n C24 H241 MQ7 sing 413 n n C24 H242 MQ7 sing 414 n n C24 H243 MQ7 sing 415 n n C25 C26 MQ7 sing 416 n n C25 H251 MQ7 sing 417 n n C25 H252 MQ7 sing 418 n n C26 C27 MQ7 sing 419 n n C26 H261 MQ7 sing 420 n n C26 H262 MQ7 sing 421 n n C27 C28 MQ7 doub 422 e n C27 H27 MQ7 sing 423 n n C28 C29 MQ7 sing 424 n n C28 C30 MQ7 sing 425 n n C29 H291 MQ7 sing 426 n n C29 H292 MQ7 sing 427 n n C29 H293 MQ7 sing 428 n n C30 C31 MQ7 sing 429 n n C30 H301 MQ7 sing 430 n n C30 H302 MQ7 sing 431 n n C31 C32 MQ7 sing 432 n n C31 H311 MQ7 sing 433 n n C31 H312 MQ7 sing 434 n n C32 C33 MQ7 doub 435 e n C32 H32 MQ7 sing 436 n n C33 C34 MQ7 sing 437 n n C33 C35 MQ7 sing 438 n n C34 H341 MQ7 sing 439 n n C34 H342 MQ7 sing 440 n n C34 H343 MQ7 sing 441 n n C35 C36 MQ7 sing 442 n n C35 H351 MQ7 sing 443 n n C35 H352 MQ7 sing 444 n n C36 C37 MQ7 sing 445 n n C36 H361 MQ7 sing 446 n n C36 H362 MQ7 sing 447 n n C37 C38 MQ7 doub 448 e n C37 H37 MQ7 sing 449 n n C38 C39 MQ7 sing 450 n n C38 C40 MQ7 sing 451 n n C39 H391 MQ7 sing 452 n n C39 H392 MQ7 sing 453 n n C39 H393 MQ7 sing 454 n n C40 C41 MQ7 sing 455 n n C40 H401 MQ7 sing 456 n n C40 H402 MQ7 sing 457 n n C41 C42 MQ7 sing 458 n n C41 H411 MQ7 sing 459 n n C41 H412 MQ7 sing 460 n n C42 C43 MQ7 doub 461 n n C42 H42 MQ7 sing 462 n n C43 C44 MQ7 sing 463 n n C43 C45 MQ7 sing 464 n n C44 H441 MQ7 sing 465 n n C44 H442 MQ7 sing 466 n n C44 H443 MQ7 sing 467 n n C45 H451 MQ7 sing 468 n n C45 H452 MQ7 sing 469 n n C45 H453 MQ7 sing 470 n n # _atom_sites.entry_id 6KOB _atom_sites.fract_transf_matrix[1][1] 0.009018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002838 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 HEA A 1 1001 1001 HEA HEA . J 5 HEA A 1 1002 1002 HEA HEA . K 6 CU A 1 1003 1105 CU CU . L 7 MQ7 A 1 1004 1201 MQ7 MQ7 . M 5 HEA E 1 1001 1001 HEA HEA . N 5 HEA E 1 1002 1002 HEA HEA . O 6 CU E 1 1003 1105 CU CU . P 7 MQ7 E 1 1004 1201 MQ7 MQ7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MQ7 . . . L 7 107.582 62.937 32.849 1 178.12 ? C1 MQ7 1004 A 1 HETATM 2 O O1 MQ7 . . . L 7 107.972 61.762 32.679 1 189.53 ? O1 MQ7 1004 A 1 HETATM 3 C C2 MQ7 . . . L 7 106.673 63.262 33.981 1 178.55 ? C2 MQ7 1004 A 1 HETATM 4 C C2M MQ7 . . . L 7 106.232 62.162 34.911 1 182.25 ? C2M MQ7 1004 A 1 HETATM 5 C C3 MQ7 . . . L 7 106.208 64.663 34.187 1 169.35 ? C3 MQ7 1004 A 1 HETATM 6 C C4 MQ7 . . . L 7 106.653 65.736 33.256 1 163.17 ? C4 MQ7 1004 A 1 HETATM 7 O O4 MQ7 . . . L 7 106.265 66.913 33.422 1 158.43 ? O4 MQ7 1004 A 1 HETATM 8 C C5 MQ7 . . . L 7 107.564 65.408 32.122 1 163.41 ? C5 MQ7 1004 A 1 HETATM 9 C C6 MQ7 . . . L 7 107.993 66.392 31.242 1 155.69 ? C6 MQ7 1004 A 1 HETATM 10 C C7 MQ7 . . . L 7 108.844 66.058 30.192 1 147.33 ? C7 MQ7 1004 A 1 HETATM 11 C C8 MQ7 . . . L 7 109.278 64.747 30.003 1 139.52 ? C8 MQ7 1004 A 1 HETATM 12 C C9 MQ7 . . . L 7 108.876 63.727 30.859 1 145.22 ? C9 MQ7 1004 A 1 HETATM 13 C C10 MQ7 . . . L 7 108.027 64.012 31.92 1 162.14 ? C10 MQ7 1004 A 1 HETATM 14 C C11 MQ7 . . . L 7 105.281 65 35.336 1 163.47 ? C11 MQ7 1004 A 1 HETATM 15 C C12 MQ7 . . . L 7 106.045 65.051 36.64 1 158.17 ? C12 MQ7 1004 A 1 HETATM 16 C C13 MQ7 . . . L 7 105.602 65.769 37.681 1 145.75 ? C13 MQ7 1004 A 1 HETATM 17 C C14 MQ7 . . . L 7 104.324 66.547 37.576 1 127.05 ? C14 MQ7 1004 A 1 HETATM 18 C C15 MQ7 . . . L 7 106.392 65.791 38.966 1 138.65 ? C15 MQ7 1004 A 1 HETATM 19 C C16 MQ7 . . . L 7 106.556 64.375 39.508 1 138.29 ? C16 MQ7 1004 A 1 HETATM 20 C C17 MQ7 . . . L 7 105.211 63.829 39.93 1 141.8 ? C17 MQ7 1004 A 1 HETATM 21 C C18 MQ7 . . . L 7 105.081 62.571 40.38 1 144.91 ? C18 MQ7 1004 A 1 HETATM 22 C C19 MQ7 . . . L 7 106.282 61.675 40.468 1 142.59 ? C19 MQ7 1004 A 1 HETATM 23 C C20 MQ7 . . . L 7 103.727 62.044 40.798 1 156.82 ? C20 MQ7 1004 A 1 HETATM 24 C C21 MQ7 . . . L 7 102.797 63.205 41.132 1 160.99 ? C21 MQ7 1004 A 1 HETATM 25 C C22 MQ7 . . . L 7 101.614 62.703 41.929 1 155.96 ? C22 MQ7 1004 A 1 HETATM 26 C C23 MQ7 . . . L 7 101.271 63.284 43.088 1 138.07 ? C23 MQ7 1004 A 1 HETATM 27 C C24 MQ7 . . . L 7 102.062 64.447 43.609 1 121.44 ? C24 MQ7 1004 A 1 HETATM 28 C C25 MQ7 . . . L 7 100.087 62.774 43.877 1 139.68 ? C25 MQ7 1004 A 1 HETATM 29 C C26 MQ7 . . . L 7 100.001 61.257 43.763 1 138.45 ? C26 MQ7 1004 A 1 HETATM 30 C C27 MQ7 . . . L 7 98.708 60.778 44.379 1 135.25 ? C27 MQ7 1004 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 617 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #