data_6KPC # _model_server_result.job_id EYrQ0vP7HPUajf5rEmk47g _model_server_result.datetime_utc '2024-11-22 19:41:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kpc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 6KPC # _exptl.entry_id 6KPC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.566 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7-[(6aR,9R,10aR)-1-Hydroxy-9-(hydroxymethyl)-6,6-dimethyl-6a,7,8,9,10,10a-hexahydro-6H-benzo[c]chromen-3-yl]- 7-methyloctanenitrile' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KPC _cell.length_a 33.96 _cell.length_b 140.22 _cell.length_c 156.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KPC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 173 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 174 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 178 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 179 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.035 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H37 N O3' _chem_comp.formula_weight 399.566 _chem_comp.id E3R _chem_comp.mon_nstd_flag . _chem_comp.name '7-[(6aR,9R,10aR)-1-Hydroxy-9-(hydroxymethyl)-6,6-dimethyl-6a,7,8,9,10,10a-hexahydro-6H-benzo[c]chromen-3-yl]- 7-methyloctanenitrile' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C4 E3R sing 83 n n O2 C14 E3R sing 84 n n C14 C11 E3R sing 85 n n C4 C3 E3R doub 86 n y C4 C5 E3R sing 87 n y C3 C2 E3R sing 88 n y C19 C17 E3R sing 89 n n C10 C11 E3R sing 90 n n C10 C7 E3R sing 91 n n C11 C12 E3R sing 92 n n C7 C5 E3R sing 93 n n C7 C8 E3R sing 94 n n C5 C6 E3R doub 95 n y C20 C17 E3R sing 96 n n C2 C17 E3R sing 97 n n C2 C1 E3R doub 98 n y C17 C18 E3R sing 99 n n C12 C13 E3R sing 100 n n C6 C1 E3R sing 101 n y C6 O1 E3R sing 102 n n C16 C9 E3R sing 103 n n C8 C13 E3R sing 104 n n C8 C9 E3R sing 105 n n C18 C21 E3R sing 106 n n O1 C9 E3R sing 107 n n C21 C22 E3R sing 108 n n C9 C15 E3R sing 109 n n C22 C23 E3R sing 110 n n C23 C24 E3R sing 111 n n N1 C25 E3R trip 112 n n C25 C24 E3R sing 113 n n C1 H1 E3R sing 114 n n C3 H2 E3R sing 115 n n C10 H3 E3R sing 116 n n C10 H4 E3R sing 117 n n C11 H5 E3R sing 118 n n C12 H6 E3R sing 119 n n C12 H7 E3R sing 120 n n C13 H8 E3R sing 121 n n C13 H9 E3R sing 122 n n C14 H10 E3R sing 123 n n C14 H11 E3R sing 124 n n C15 H12 E3R sing 125 n n C15 H13 E3R sing 126 n n C15 H14 E3R sing 127 n n C16 H15 E3R sing 128 n n C16 H16 E3R sing 129 n n C16 H17 E3R sing 130 n n C18 H18 E3R sing 131 n n C18 H19 E3R sing 132 n n C19 H20 E3R sing 133 n n C19 H21 E3R sing 134 n n C19 H22 E3R sing 135 n n C20 H23 E3R sing 136 n n C20 H24 E3R sing 137 n n C20 H25 E3R sing 138 n n C21 H26 E3R sing 139 n n C21 H27 E3R sing 140 n n C22 H28 E3R sing 141 n n C22 H29 E3R sing 142 n n C23 H30 E3R sing 143 n n C23 H31 E3R sing 144 n n C24 H32 E3R sing 145 n n C24 H33 E3R sing 146 n n C7 H34 E3R sing 147 n n C8 H35 E3R sing 148 n n O2 H36 E3R sing 149 n n O3 H37 E3R sing 150 n n # _atom_sites.entry_id 6KPC _atom_sites.fract_transf_matrix[1][1] 0.029446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0064 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id E3R _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1201 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id E3R _pdbx_nonpoly_scheme.auth_mon_id AM3 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 E3R . . . B 2 10.606 1.424 -43.407 1 115.65 ? C1 E3R 1201 A 1 HETATM 2 C C2 E3R . . . B 2 9.397 0.759 -43.149 1 114.87 ? C2 E3R 1201 A 1 HETATM 3 C C3 E3R . . . B 2 8.324 1.049 -44.015 1 114.37 ? C3 E3R 1201 A 1 HETATM 4 C C4 E3R . . . B 2 8.461 1.943 -45.087 1 113.78 ? C4 E3R 1201 A 1 HETATM 5 C C5 E3R . . . B 2 9.705 2.555 -45.395 1 115.25 ? C5 E3R 1201 A 1 HETATM 6 N N1 E3R . . . B 2 14.312 -5.619 -45.255 1 115.52 ? N1 E3R 1201 A 1 HETATM 7 C C10 E3R . . . B 2 9.492 2.953 -47.868 1 114.79 ? C10 E3R 1201 A 1 HETATM 8 C C11 E3R . . . B 2 9.535 4.095 -48.94 1 114.1 ? C11 E3R 1201 A 1 HETATM 9 C C12 E3R . . . B 2 10.858 4.932 -48.892 1 114.73 ? C12 E3R 1201 A 1 HETATM 10 C C13 E3R . . . B 2 11.263 5.346 -47.456 1 115.44 ? C13 E3R 1201 A 1 HETATM 11 C C14 E3R . . . B 2 9.425 3.481 -50.331 1 113.45 ? C14 E3R 1201 A 1 HETATM 12 C C15 E3R . . . B 2 13.547 4.465 -45.428 1 115.76 ? C15 E3R 1201 A 1 HETATM 13 C C16 E3R . . . B 2 11.494 5.295 -44.283 1 114.27 ? C16 E3R 1201 A 1 HETATM 14 C C17 E3R . . . B 2 9.27 -0.106 -42.001 1 113.35 ? C17 E3R 1201 A 1 HETATM 15 C C18 E3R . . . B 2 10.472 -1.064 -41.823 1 112.19 ? C18 E3R 1201 A 1 HETATM 16 C C19 E3R . . . B 2 7.971 -0.923 -42.01 1 113.05 ? C19 E3R 1201 A 1 HETATM 17 C C20 E3R . . . B 2 9.203 0.75 -40.725 1 113.15 ? C20 E3R 1201 A 1 HETATM 18 C C21 E3R . . . B 2 10.592 -2.117 -42.931 1 111.62 ? C21 E3R 1201 A 1 HETATM 19 C C22 E3R . . . B 2 12.046 -2.57 -43.013 1 111.46 ? C22 E3R 1201 A 1 HETATM 20 C C23 E3R . . . B 2 12.352 -2.986 -44.444 1 112.14 ? C23 E3R 1201 A 1 HETATM 21 C C24 E3R . . . B 2 12.112 -4.486 -44.59 1 113.18 ? C24 E3R 1201 A 1 HETATM 22 C C25 E3R . . . B 2 13.354 -5.125 -44.963 1 114.7 ? C25 E3R 1201 A 1 HETATM 23 C C6 E3R . . . B 2 10.757 2.307 -44.472 1 115.64 ? C6 E3R 1201 A 1 HETATM 24 C C7 E3R . . . B 2 9.852 3.52 -46.46 1 115.57 ? C7 E3R 1201 A 1 HETATM 25 C C8 E3R . . . B 2 11.316 4.052 -46.607 1 115.82 ? C8 E3R 1201 A 1 HETATM 26 C C9 E3R . . . B 2 12.052 4.189 -45.217 1 115.36 ? C9 E3R 1201 A 1 HETATM 27 O O1 E3R . . . B 2 11.983 2.916 -44.62 1 115.42 ? O1 E3R 1201 A 1 HETATM 28 O O2 E3R . . . B 2 8.051 3.256 -50.658 1 113.54 ? O2 E3R 1201 A 1 HETATM 29 O O3 E3R . . . B 2 7.386 2.191 -45.888 1 112.29 ? O3 E3R 1201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #