data_6KPG # _model_server_result.job_id TOA_cKtJN47VFlIxw8CdLw _model_server_result.datetime_utc '2024-11-22 19:37:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 6KPG # _exptl.entry_id 6KPG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 445.658 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6~{a}~{R},9~{R},10~{a}~{R})-9-(hydroxymethyl)-3-(8-isothiocyanato-2-methyl-octan-2-yl)-6,6-dimethyl-6~{a},7,8,9,10,10~{a}-hexahydrobenzo[c]chromen-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KPG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 301 R CYS 257 1_555 D SG CYS 308 R CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 E SG CYS 159 S CYS 147 1_555 E SG CYS 229 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C26 H39 N O3 S' _chem_comp.formula_weight 445.658 _chem_comp.id 8D0 _chem_comp.mon_nstd_flag . _chem_comp.name (6~{a}~{R},9~{R},10~{a}~{R})-9-(hydroxymethyl)-3-(8-isothiocyanato-2-methyl-octan-2-yl)-6,6-dimethyl-6~{a},7,8,9,10,10~{a}-hexahydrobenzo[c]chromen-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C24 8D0 sing 1 n n C23 C22 8D0 sing 2 n n C24 C25 8D0 sing 3 n n C19 C17 8D0 sing 4 n n C22 C21 8D0 sing 5 n n C18 C21 8D0 sing 6 n n C18 C17 8D0 sing 7 n n C25 N1 8D0 sing 8 n n C17 C20 8D0 sing 9 n n C17 C2 8D0 sing 10 n n C3 C2 8D0 doub 11 n y C3 C4 8D0 sing 12 n y O3 C4 8D0 sing 13 n n C2 C1 8D0 sing 14 n y C4 C5 8D0 doub 15 n y O2 C14 8D0 sing 16 n n C1 C6 8D0 doub 17 n y C5 C6 8D0 sing 18 n y C5 C7 8D0 sing 19 n n C10 C7 8D0 sing 20 n n C10 C11 8D0 sing 21 n n C6 O1 8D0 sing 22 n n C14 C11 8D0 sing 23 n n C7 C8 8D0 sing 24 n n C11 C12 8D0 sing 25 n n O1 C9 8D0 sing 26 n n C8 C9 8D0 sing 27 n n C8 C13 8D0 sing 28 n n C12 C13 8D0 sing 29 n n C9 C15 8D0 sing 30 n n C9 C16 8D0 sing 31 n n C1 H1 8D0 sing 32 n n C3 H2 8D0 sing 33 n n C10 H6 8D0 sing 34 n n C10 H7 8D0 sing 35 n n C11 H8 8D0 sing 36 n n C12 H9 8D0 sing 37 n n C12 H10 8D0 sing 38 n n C13 H11 8D0 sing 39 n n C13 H12 8D0 sing 40 n n C14 H13 8D0 sing 41 n n C14 H14 8D0 sing 42 n n C15 H15 8D0 sing 43 n n C15 H16 8D0 sing 44 n n C15 H17 8D0 sing 45 n n C16 H18 8D0 sing 46 n n C16 H19 8D0 sing 47 n n C16 H20 8D0 sing 48 n n C18 H21 8D0 sing 49 n n C18 H22 8D0 sing 50 n n C19 H23 8D0 sing 51 n n C19 H24 8D0 sing 52 n n C19 H25 8D0 sing 53 n n C20 H26 8D0 sing 54 n n C20 H27 8D0 sing 55 n n C20 H28 8D0 sing 56 n n C21 H29 8D0 sing 57 n n C21 H30 8D0 sing 58 n n C22 H31 8D0 sing 59 n n C22 H32 8D0 sing 60 n n C23 H33 8D0 sing 61 n n C23 H34 8D0 sing 62 n n C24 H35 8D0 sing 63 n n C24 H36 8D0 sing 64 n n C25 H37 8D0 sing 65 n n C25 H38 8D0 sing 66 n n C7 H39 8D0 sing 67 n n C8 H40 8D0 sing 68 n n O2 H41 8D0 sing 69 n n O3 H42 8D0 sing 70 n n N1 C26 8D0 doub 71 n n C26 S1 8D0 doub 72 n n # _atom_sites.entry_id 6KPG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id 8D0 _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 501 _pdbx_nonpoly_scheme.pdb_mon_id 8D0 _pdbx_nonpoly_scheme.auth_mon_id AML _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8D0 . . . F 6 103.715 143.457 132.941 1 101.77 ? C1 8D0 501 R 1 HETATM 2 C C2 8D0 . . . F 6 103.834 144.113 131.7 1 101.77 ? C2 8D0 501 R 1 HETATM 3 C C3 8D0 . . . F 6 103.184 145.345 131.512 1 101.77 ? C3 8D0 501 R 1 HETATM 4 C C4 8D0 . . . F 6 102.419 145.94 132.539 1 101.77 ? C4 8D0 501 R 1 HETATM 5 C C5 8D0 . . . F 6 102.299 145.274 133.813 1 101.77 ? C5 8D0 501 R 1 HETATM 6 N N1 8D0 . . . F 6 110.589 144.365 134.21 1 101.77 ? N1 8D0 501 R 1 HETATM 7 C C10 8D0 . . . F 6 101.559 147.415 135.264 1 101.77 ? C10 8D0 501 R 1 HETATM 8 C C11 8D0 . . . F 6 100.761 147.84 136.487 1 101.77 ? C11 8D0 501 R 1 HETATM 9 C C12 8D0 . . . F 6 101.331 147.162 137.719 1 101.77 ? C12 8D0 501 R 1 HETATM 10 C C13 8D0 . . . F 6 101.163 145.659 137.539 1 101.77 ? C13 8D0 501 R 1 HETATM 11 C C14 8D0 . . . F 6 100.841 149.356 136.643 1 101.77 ? C14 8D0 501 R 1 HETATM 12 C C15 8D0 . . . F 6 102.644 143.179 137.471 1 101.77 ? C15 8D0 501 R 1 HETATM 13 C C16 8D0 . . . F 6 100.644 143.132 136.011 1 101.77 ? C16 8D0 501 R 1 HETATM 14 C C17 8D0 . . . F 6 104.657 143.532 130.555 1 101.77 ? C17 8D0 501 R 1 HETATM 15 C C18 8D0 . . . F 6 106.073 144.155 130.607 1 101.77 ? C18 8D0 501 R 1 HETATM 16 C C19 8D0 . . . F 6 104.741 142.012 130.638 1 101.77 ? C19 8D0 501 R 1 HETATM 17 C C20 8D0 . . . F 6 103.986 143.893 129.239 1 101.77 ? C20 8D0 501 R 1 HETATM 18 C C21 8D0 . . . F 6 106.997 143.527 131.672 1 101.77 ? C21 8D0 501 R 1 HETATM 19 C C22 8D0 . . . F 6 108.418 144.074 131.641 1 101.77 ? C22 8D0 501 R 1 HETATM 20 C C23 8D0 . . . F 6 108.525 145.501 132.177 1 101.77 ? C23 8D0 501 R 1 HETATM 21 C C24 8D0 . . . F 6 109.987 145.896 132.443 1 101.77 ? C24 8D0 501 R 1 HETATM 22 C C25 8D0 . . . F 6 110.336 145.737 133.928 1 101.77 ? C25 8D0 501 R 1 HETATM 23 C C6 8D0 . . . F 6 102.962 144.019 133.99 1 101.77 ? C6 8D0 501 R 1 HETATM 24 C C7 8D0 . . . F 6 101.482 145.839 135.01 1 101.77 ? C7 8D0 501 R 1 HETATM 25 C C8 8D0 . . . F 6 102 145.22 136.252 1 101.77 ? C8 8D0 501 R 1 HETATM 26 C C9 8D0 . . . F 6 102.054 143.707 136.172 1 101.77 ? C9 8D0 501 R 1 HETATM 27 O O1 8D0 . . . F 6 102.923 143.279 135.144 1 101.77 ? O1 8D0 501 R 1 HETATM 28 O O2 8D0 . . . F 6 99.53 149.824 136.867 1 101.77 ? O2 8D0 501 R 1 HETATM 29 O O3 8D0 . . . F 6 101.842 147.151 132.166 1 101.77 ? O3 8D0 501 R 1 HETATM 30 C C26 8D0 . . . F 6 111.115 144.046 135.243 1 101.77 ? C26 8D0 501 R 1 HETATM 31 S S1 8D0 . . . F 6 111.81 143.603 136.594 1 101.77 ? S1 8D0 501 R 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #