data_6KPL # _model_server_result.job_id 19-bSkIVqHss607Tjlu7EQ _model_server_result.datetime_utc '2024-10-19 13:30:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kpl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6KPL # _exptl.entry_id 6KPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6KPL _cell.length_a 105.513 _cell.length_b 105.513 _cell.length_c 63.432 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 6 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 24 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 58 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 76 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.076 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 6KPL _atom_sites.fract_transf_matrix[1][1] 0.009478 _atom_sites.fract_transf_matrix[1][2] 0.005472 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGE A 1 401 401 PGE PGE . C 3 PEG A 1 402 501 PEG PEG . D 3 PEG A 1 403 601 PEG PEG . E 3 PEG A 1 404 701 PEG PEG . F 4 HOH A 1 501 270 HOH HOH . F 4 HOH A 2 502 70 HOH HOH . F 4 HOH A 3 503 67 HOH HOH . F 4 HOH A 4 504 234 HOH HOH . F 4 HOH A 5 505 144 HOH HOH . F 4 HOH A 6 506 55 HOH HOH . F 4 HOH A 7 507 151 HOH HOH . F 4 HOH A 8 508 277 HOH HOH . F 4 HOH A 9 509 233 HOH HOH . F 4 HOH A 10 510 15 HOH HOH . F 4 HOH A 11 511 123 HOH HOH . F 4 HOH A 12 512 109 HOH HOH . F 4 HOH A 13 513 108 HOH HOH . F 4 HOH A 14 514 39 HOH HOH . F 4 HOH A 15 515 69 HOH HOH . F 4 HOH A 16 516 112 HOH HOH . F 4 HOH A 17 517 105 HOH HOH . F 4 HOH A 18 518 195 HOH HOH . F 4 HOH A 19 519 113 HOH HOH . F 4 HOH A 20 520 150 HOH HOH . F 4 HOH A 21 521 120 HOH HOH . F 4 HOH A 22 522 205 HOH HOH . F 4 HOH A 23 523 100 HOH HOH . F 4 HOH A 24 524 161 HOH HOH . F 4 HOH A 25 525 94 HOH HOH . F 4 HOH A 26 526 96 HOH HOH . F 4 HOH A 27 527 12 HOH HOH . F 4 HOH A 28 528 134 HOH HOH . F 4 HOH A 29 529 214 HOH HOH . F 4 HOH A 30 530 84 HOH HOH . F 4 HOH A 31 531 8 HOH HOH . F 4 HOH A 32 532 192 HOH HOH . F 4 HOH A 33 533 142 HOH HOH . F 4 HOH A 34 534 255 HOH HOH . F 4 HOH A 35 535 217 HOH HOH . F 4 HOH A 36 536 201 HOH HOH . F 4 HOH A 37 537 198 HOH HOH . F 4 HOH A 38 538 167 HOH HOH . F 4 HOH A 39 539 176 HOH HOH . F 4 HOH A 40 540 248 HOH HOH . F 4 HOH A 41 541 235 HOH HOH . F 4 HOH A 42 542 101 HOH HOH . F 4 HOH A 43 543 121 HOH HOH . F 4 HOH A 44 544 137 HOH HOH . F 4 HOH A 45 545 129 HOH HOH . F 4 HOH A 46 546 237 HOH HOH . F 4 HOH A 47 547 24 HOH HOH . F 4 HOH A 48 548 107 HOH HOH . F 4 HOH A 49 549 13 HOH HOH . F 4 HOH A 50 550 28 HOH HOH . F 4 HOH A 51 551 262 HOH HOH . F 4 HOH A 52 552 27 HOH HOH . F 4 HOH A 53 553 71 HOH HOH . F 4 HOH A 54 554 119 HOH HOH . F 4 HOH A 55 555 62 HOH HOH . F 4 HOH A 56 556 206 HOH HOH . F 4 HOH A 57 557 98 HOH HOH . F 4 HOH A 58 558 56 HOH HOH . F 4 HOH A 59 559 37 HOH HOH . F 4 HOH A 60 560 48 HOH HOH . F 4 HOH A 61 561 236 HOH HOH . F 4 HOH A 62 562 63 HOH HOH . F 4 HOH A 63 563 278 HOH HOH . F 4 HOH A 64 564 159 HOH HOH . F 4 HOH A 65 565 106 HOH HOH . F 4 HOH A 66 566 20 HOH HOH . F 4 HOH A 67 567 25 HOH HOH . F 4 HOH A 68 568 86 HOH HOH . F 4 HOH A 69 569 4 HOH HOH . F 4 HOH A 70 570 242 HOH HOH . F 4 HOH A 71 571 1 HOH HOH . F 4 HOH A 72 572 38 HOH HOH . F 4 HOH A 73 573 149 HOH HOH . F 4 HOH A 74 574 45 HOH HOH . F 4 HOH A 75 575 59 HOH HOH . F 4 HOH A 76 576 22 HOH HOH . F 4 HOH A 77 577 135 HOH HOH . F 4 HOH A 78 578 260 HOH HOH . F 4 HOH A 79 579 17 HOH HOH . F 4 HOH A 80 580 247 HOH HOH . F 4 HOH A 81 581 42 HOH HOH . F 4 HOH A 82 582 252 HOH HOH . F 4 HOH A 83 583 246 HOH HOH . F 4 HOH A 84 584 54 HOH HOH . F 4 HOH A 85 585 92 HOH HOH . F 4 HOH A 86 586 81 HOH HOH . F 4 HOH A 87 587 104 HOH HOH . F 4 HOH A 88 588 11 HOH HOH . F 4 HOH A 89 589 75 HOH HOH . F 4 HOH A 90 590 186 HOH HOH . F 4 HOH A 91 591 49 HOH HOH . F 4 HOH A 92 592 194 HOH HOH . F 4 HOH A 93 593 254 HOH HOH . F 4 HOH A 94 594 165 HOH HOH . F 4 HOH A 95 595 88 HOH HOH . F 4 HOH A 96 596 66 HOH HOH . F 4 HOH A 97 597 140 HOH HOH . F 4 HOH A 98 598 52 HOH HOH . F 4 HOH A 99 599 152 HOH HOH . F 4 HOH A 100 600 34 HOH HOH . F 4 HOH A 101 601 124 HOH HOH . F 4 HOH A 102 602 141 HOH HOH . F 4 HOH A 103 603 3 HOH HOH . F 4 HOH A 104 604 2 HOH HOH . F 4 HOH A 105 605 90 HOH HOH . F 4 HOH A 106 606 85 HOH HOH . F 4 HOH A 107 607 160 HOH HOH . F 4 HOH A 108 608 196 HOH HOH . F 4 HOH A 109 609 162 HOH HOH . F 4 HOH A 110 610 238 HOH HOH . F 4 HOH A 111 611 111 HOH HOH . F 4 HOH A 112 612 18 HOH HOH . F 4 HOH A 113 613 74 HOH HOH . F 4 HOH A 114 614 187 HOH HOH . F 4 HOH A 115 615 64 HOH HOH . F 4 HOH A 116 616 239 HOH HOH . F 4 HOH A 117 617 93 HOH HOH . F 4 HOH A 118 618 21 HOH HOH . F 4 HOH A 119 619 118 HOH HOH . F 4 HOH A 120 620 89 HOH HOH . F 4 HOH A 121 621 65 HOH HOH . F 4 HOH A 122 622 31 HOH HOH . F 4 HOH A 123 623 200 HOH HOH . F 4 HOH A 124 624 57 HOH HOH . F 4 HOH A 125 625 60 HOH HOH . F 4 HOH A 126 626 240 HOH HOH . F 4 HOH A 127 627 208 HOH HOH . F 4 HOH A 128 628 116 HOH HOH . F 4 HOH A 129 629 103 HOH HOH . F 4 HOH A 130 630 128 HOH HOH . F 4 HOH A 131 631 36 HOH HOH . F 4 HOH A 132 632 76 HOH HOH . F 4 HOH A 133 633 43 HOH HOH . F 4 HOH A 134 634 40 HOH HOH . F 4 HOH A 135 635 261 HOH HOH . F 4 HOH A 136 636 33 HOH HOH . F 4 HOH A 137 637 78 HOH HOH . F 4 HOH A 138 638 7 HOH HOH . F 4 HOH A 139 639 5 HOH HOH . F 4 HOH A 140 640 30 HOH HOH . F 4 HOH A 141 641 110 HOH HOH . F 4 HOH A 142 642 199 HOH HOH . F 4 HOH A 143 643 148 HOH HOH . F 4 HOH A 144 644 10 HOH HOH . F 4 HOH A 145 645 258 HOH HOH . F 4 HOH A 146 646 14 HOH HOH . F 4 HOH A 147 647 102 HOH HOH . F 4 HOH A 148 648 114 HOH HOH . F 4 HOH A 149 649 172 HOH HOH . F 4 HOH A 150 650 122 HOH HOH . F 4 HOH A 151 651 178 HOH HOH . F 4 HOH A 152 652 83 HOH HOH . F 4 HOH A 153 653 47 HOH HOH . F 4 HOH A 154 654 79 HOH HOH . F 4 HOH A 155 655 241 HOH HOH . F 4 HOH A 156 656 173 HOH HOH . F 4 HOH A 157 657 9 HOH HOH . F 4 HOH A 158 658 41 HOH HOH . F 4 HOH A 159 659 32 HOH HOH . F 4 HOH A 160 660 264 HOH HOH . F 4 HOH A 161 661 243 HOH HOH . F 4 HOH A 162 662 131 HOH HOH . F 4 HOH A 163 663 133 HOH HOH . F 4 HOH A 164 664 73 HOH HOH . F 4 HOH A 165 665 181 HOH HOH . F 4 HOH A 166 666 267 HOH HOH . F 4 HOH A 167 667 127 HOH HOH . F 4 HOH A 168 668 209 HOH HOH . F 4 HOH A 169 669 188 HOH HOH . F 4 HOH A 170 670 6 HOH HOH . F 4 HOH A 171 671 220 HOH HOH . F 4 HOH A 172 672 117 HOH HOH . F 4 HOH A 173 673 80 HOH HOH . F 4 HOH A 174 674 87 HOH HOH . F 4 HOH A 175 675 35 HOH HOH . F 4 HOH A 176 676 16 HOH HOH . F 4 HOH A 177 677 253 HOH HOH . F 4 HOH A 178 678 44 HOH HOH . F 4 HOH A 179 679 139 HOH HOH . F 4 HOH A 180 680 19 HOH HOH . F 4 HOH A 181 681 29 HOH HOH . F 4 HOH A 182 682 91 HOH HOH . F 4 HOH A 183 683 170 HOH HOH . F 4 HOH A 184 684 53 HOH HOH . F 4 HOH A 185 685 72 HOH HOH . F 4 HOH A 186 686 97 HOH HOH . F 4 HOH A 187 687 177 HOH HOH . F 4 HOH A 188 688 211 HOH HOH . F 4 HOH A 189 689 99 HOH HOH . F 4 HOH A 190 690 244 HOH HOH . F 4 HOH A 191 691 204 HOH HOH . F 4 HOH A 192 692 50 HOH HOH . F 4 HOH A 193 693 26 HOH HOH . F 4 HOH A 194 694 23 HOH HOH . F 4 HOH A 195 695 213 HOH HOH . F 4 HOH A 196 696 46 HOH HOH . F 4 HOH A 197 697 272 HOH HOH . F 4 HOH A 198 698 163 HOH HOH . F 4 HOH A 199 699 147 HOH HOH . F 4 HOH A 200 700 58 HOH HOH . F 4 HOH A 201 701 143 HOH HOH . F 4 HOH A 202 702 197 HOH HOH . F 4 HOH A 203 703 115 HOH HOH . F 4 HOH A 204 704 166 HOH HOH . F 4 HOH A 205 705 179 HOH HOH . F 4 HOH A 206 706 136 HOH HOH . F 4 HOH A 207 707 153 HOH HOH . F 4 HOH A 208 708 183 HOH HOH . F 4 HOH A 209 709 158 HOH HOH . F 4 HOH A 210 710 155 HOH HOH . F 4 HOH A 211 711 168 HOH HOH . F 4 HOH A 212 712 251 HOH HOH . F 4 HOH A 213 713 249 HOH HOH . F 4 HOH A 214 714 216 HOH HOH . F 4 HOH A 215 715 68 HOH HOH . F 4 HOH A 216 716 263 HOH HOH . F 4 HOH A 217 717 245 HOH HOH . F 4 HOH A 218 718 250 HOH HOH . F 4 HOH A 219 719 95 HOH HOH . F 4 HOH A 220 720 274 HOH HOH . F 4 HOH A 221 721 266 HOH HOH . F 4 HOH A 222 722 169 HOH HOH . F 4 HOH A 223 723 190 HOH HOH . F 4 HOH A 224 724 221 HOH HOH . F 4 HOH A 225 725 164 HOH HOH . F 4 HOH A 226 726 61 HOH HOH . F 4 HOH A 227 727 279 HOH HOH . F 4 HOH A 228 728 275 HOH HOH . F 4 HOH A 229 729 146 HOH HOH . F 4 HOH A 230 730 130 HOH HOH . F 4 HOH A 231 731 273 HOH HOH . F 4 HOH A 232 732 218 HOH HOH . F 4 HOH A 233 733 157 HOH HOH . F 4 HOH A 234 734 145 HOH HOH . F 4 HOH A 235 735 225 HOH HOH . F 4 HOH A 236 736 268 HOH HOH . F 4 HOH A 237 737 126 HOH HOH . F 4 HOH A 238 738 132 HOH HOH . F 4 HOH A 239 739 215 HOH HOH . F 4 HOH A 240 740 171 HOH HOH . F 4 HOH A 241 741 185 HOH HOH . F 4 HOH A 242 742 271 HOH HOH . F 4 HOH A 243 743 231 HOH HOH . F 4 HOH A 244 744 223 HOH HOH . F 4 HOH A 245 745 51 HOH HOH . F 4 HOH A 246 746 222 HOH HOH . F 4 HOH A 247 747 219 HOH HOH . F 4 HOH A 248 748 207 HOH HOH . F 4 HOH A 249 749 228 HOH HOH . F 4 HOH A 250 750 180 HOH HOH . F 4 HOH A 251 751 202 HOH HOH . F 4 HOH A 252 752 182 HOH HOH . F 4 HOH A 253 753 174 HOH HOH . F 4 HOH A 254 754 230 HOH HOH . F 4 HOH A 255 755 269 HOH HOH . F 4 HOH A 256 756 156 HOH HOH . F 4 HOH A 257 757 210 HOH HOH . F 4 HOH A 258 758 191 HOH HOH . F 4 HOH A 259 759 154 HOH HOH . F 4 HOH A 260 760 257 HOH HOH . F 4 HOH A 261 761 138 HOH HOH . F 4 HOH A 262 762 224 HOH HOH . F 4 HOH A 263 763 256 HOH HOH . F 4 HOH A 264 764 189 HOH HOH . F 4 HOH A 265 765 193 HOH HOH . F 4 HOH A 266 766 276 HOH HOH . F 4 HOH A 267 767 77 HOH HOH . F 4 HOH A 268 768 175 HOH HOH . F 4 HOH A 269 769 125 HOH HOH . F 4 HOH A 270 770 265 HOH HOH . F 4 HOH A 271 771 229 HOH HOH . F 4 HOH A 272 772 82 HOH HOH . F 4 HOH A 273 773 232 HOH HOH . F 4 HOH A 274 774 227 HOH HOH . F 4 HOH A 275 775 203 HOH HOH . F 4 HOH A 276 776 184 HOH HOH . F 4 HOH A 277 777 212 HOH HOH . F 4 HOH A 278 778 226 HOH HOH . F 4 HOH A 279 779 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . E 3 17.403 58.492 38.39 1 46.03 ? C1 PEG 404 A 1 HETATM 2 O O1 PEG . . . E 3 17.572 57.092 38.535 1 61.16 ? O1 PEG 404 A 1 HETATM 3 C C2 PEG . . . E 3 17.989 58.999 37.119 1 42.91 ? C2 PEG 404 A 1 HETATM 4 O O2 PEG . . . E 3 17.008 59.713 36.376 1 49.25 ? O2 PEG 404 A 1 HETATM 5 C C3 PEG . . . E 3 16.331 58.93 35.401 1 45.17 ? C3 PEG 404 A 1 HETATM 6 C C4 PEG . . . E 3 15.843 57.577 35.9 1 50.17 ? C4 PEG 404 A 1 HETATM 7 O O4 PEG . . . E 3 16.638 56.48 35.451 1 51.79 ? O4 PEG 404 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #